Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004341.1

Orthogroup ID

OG0001458

Physical Location & Seq

Genomic Coordinates Forward (+)

16261 .. 17476

Gene Structure 1216 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004341.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

atgcctcatatggttcgtgaagttgaaattttgttggcagtgcggagtggcagacatgatcgaatgaactttggccaagttgaaaataacccgacctacagggagcagtgtgtaattaagcgccttcgagcctgctcccaaaacgacgtcggcgccccgctcttcttcaaagttgctgctgcccttgttcgagttcgagcttcagcaaagcaagccaagatggacgcaatcagccaattacaagaacaggtgaacaaaatcgcgaccattgctttcaccaccatcggaaccctacagagggacgctccacccgtccgaatctcccccaattaccccgaatccgagtcagcaccgcaacccaacccgaacccgaacccgaatccgactgacgatgccgccgattttgcgatgcagcccaagctaatgagcgcggatctagtcaaagcagccaagcagtttgatgcattggtttcggcacttccgctgtcggagggaggcgaggaagctcagatgaagaggattgcggagcttcaggccgaaaacagccttgtaggccaacaacttgagaagcaacttgaagctgcagagagagaactggaagaggtcagagagttgtttggccaagcagcagatcactgtttgaacttgaagaaaccagaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med21

Protein Analysis

220

Amino Acids

24.31

Weight (kDa)

5.56

Isoelectric Point (pI)

49.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04780
fragaria_vesca	FvH4_3g18180 FvH4_3g18181 FvH4_4g21200
malus_domestica	MD10G1319700.v1.1
prunus_persica	Prupe.1G108500_v2.0.a1 Prupe.1G108500_v2.0.a1 Prupe.1G108500_v2.0.a1 Prupe.1G108500_v2.0.a1 Prupe.1G108500_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1
pyrus_communis	pycom10g27060 pycom16g12330
rosa_chinensis	RchiOBHm_Chr4g0426811 RchiOBHm_Chr5g0030661 RchiOBHm_Chr5g0030681
rosa_laevigata	RLG00000007276 RLG00000033237 RLG00000033242 RLG00000033244
rosa_multiflora	Rmu_sc0000953.1_g000011 Rmu_sc0004341.1_g000003 Rmu_sc0004963.1_g000002
rosa_roxburghii	Rroxscaffold_1G00049620 Rroxscaffold_1G00049630 Rroxscaffold_1G00049640 Rroxscaffold_5G00368780
rosa_rugosa	Rorug04G0215000 Rorug05G0120100 Rorug05G0120100
rosa_samantha	Rh4AG270000 Rh4BG276300 Rh4CG291000 Rh4DG273500 Rh5AG211500 Rh5AG211700 Rh5BG210400 Rh5BG210600 Rh5CG234200 Rh5DG215500 Rh5DG215600 Rh5DG215800 Rh5DG215900
rosa_wichuraiana	Rw4G023430 Rw5G019370 Rw5G019410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	150
AccB1I	GGYRCC	1 cut(s)	152
AccBSI	CCGCTC	1 cut(s)	160
AccII	CGCG	2 cut(s)	263, 431
AciI	CCGC	7 cut(s)	43, 158, 353, 396, 431, 482, 524
AclWI	GGATC	1 cut(s)	441
AcoI	YGGCCR	2 cut(s)	73, 619
AcsI	RAATTY	1 cut(s)	27
AcuI	CTGAAG	2 cut(s)	186, 515
AcyI	GRCGYC	2 cut(s)	147, 153
AfiI	CCNNNNNNNGG	2 cut(s)	297, 298
AgsI	TTSAA	6 cut(s)	26, 83, 169, 578, 643, 649
AluBI	AGCT	5 cut(s)	200, 421, 506, 529, 581
AluI	AGCT	5 cut(s)	200, 421, 506, 529, 581
AlwI	GGATC	1 cut(s)	441
AoxI	GGCC	4 cut(s)	73, 534, 553, 619
ApeKI	GCWGC	6 cut(s)	176, 179, 412, 446, 581, 626
ApoI	RAATTY	1 cut(s)	27
AspLEI	GCGC	3 cut(s)	123, 155, 431
AsuHPI	GGTGA	2 cut(s)	262, 268
BalI	TGGCCA	2 cut(s)	75, 621
BanI	GGYRCC	1 cut(s)	152
BbvI	GCAGC	6 cut(s)	163, 166, 424, 458, 568, 638
BccI	CCATC	2 cut(s)	214, 290
BcgI	CGANNNNNNTGC	2 cut(s)	453, 487
BfaI	CTAG	1 cut(s)	437
BfmI	CTRYAG	3 cut(s)	97, 293, 582
BfoI	RGCGCY	2 cut(s)	124, 156
BglI	GCCNNNNNGGC	1 cut(s)	552
BisI	GCNGC	7 cut(s)	177, 180, 396, 413, 447, 582, 627
BlsI	GCNGC	7 cut(s)	178, 181, 397, 414, 448, 583, 628
BmiI	GGNNCC	2 cut(s)	154, 289
BmsI	GCATC	3 cut(s)	382, 399, 451
BplI	GAGNNNNNCTC	2 cut(s)	289, 321
BpuEI	CTTGAG	1 cut(s)	584
BsaHI	GRCGYC	2 cut(s)	147, 153
Bsc4I	CCNNNNNNNGG	2 cut(s)	297, 298
Bse1I	ACTGG	1 cut(s)	600
Bse3DI	GCAATG	1 cut(s)	267
BseLI	CCNNNNNNNGG	2 cut(s)	297, 298
BseMI	GCAATG	1 cut(s)	267
BseMII	CTCAG	1 cut(s)	521
BseNI	ACTGG	1 cut(s)	600
BseXI	GCAGC	6 cut(s)	163, 166, 424, 458, 568, 638
Bsh1236I	CGCG	2 cut(s)	263, 431
BshFI	GGCC	4 cut(s)	75, 536, 555, 621
BshNI	GGYRCC	1 cut(s)	152
BslFI	GGGAC	1 cut(s)	314
BslI	CCNNNNNNNGG	2 cut(s)	297, 298
BsmFI	GGGAC	1 cut(s)	314
BsnI	GGCC	4 cut(s)	75, 536, 555, 621
Bsp143I	GATC	3 cut(s)	58, 433, 631
Bsp68I	TCGCGA	1 cut(s)	263
BspACI	CCGC	7 cut(s)	43, 158, 353, 396, 431, 482, 524
BspANI	GGCC	4 cut(s)	75, 536, 555, 621
BspCNI	CTCAG	1 cut(s)	520
BspFNI	CGCG	2 cut(s)	263, 431
BspLI	GGNNCC	2 cut(s)	154, 289
BspMAI	CTGCAG	1 cut(s)	586
BspPI	GGATC	1 cut(s)	441
BspQI	GCTCTTC	1 cut(s)	167
BspT107I	GGYRCC	1 cut(s)	152
BsrBI	CCGCTC	1 cut(s)	160
BsrDI	GCAATG	1 cut(s)	267
BsrI	ACTGG	1 cut(s)	600
BssMI	GATC	3 cut(s)	58, 433, 631
BssNI	GRCGYC	2 cut(s)	147, 153
Bst4CI	ACNGT	1 cut(s)	638
Bst6I	CTCTTC	3 cut(s)	167, 509, 594
BstACI	GRCGYC	2 cut(s)	147, 153
BstC8I	GCNNGC	2 cut(s)	133, 213
BstDEI	CTNAG	1 cut(s)	507
BstFNI	CGCG	2 cut(s)	263, 431
BstH2I	RGCGCY	2 cut(s)	124, 156
BstHHI	GCGC	3 cut(s)	123, 155, 431
BstKTI	GATC	3 cut(s)	61, 436, 634
BstMBI	GATC	3 cut(s)	58, 433, 631
BstMWI	GCNNNNNNNGC	5 cut(s)	212, 269, 404, 418, 552
BstSFI	CTRYAG	3 cut(s)	97, 293, 582
BstUI	CGCG	2 cut(s)	263, 431
BstV1I	GCAGC	6 cut(s)	163, 166, 424, 458, 568, 638
BstX2I	RGATCY	1 cut(s)	433
BstYI	RGATCY	1 cut(s)	433
BsuRI	GGCC	4 cut(s)	75, 536, 555, 621
BtgZI	GCGATG	1 cut(s)	422
BtsI	GCAGTG	2 cut(s)	45, 113
BtsIMutI	CAGTG	3 cut(s)	45, 113, 634
BtuMI	TCGCGA	1 cut(s)	263
Cac8I	GCNNGC	2 cut(s)	133, 213
CfoI	GCGC	3 cut(s)	123, 155, 431
CseI	GACGC	2 cut(s)	233, 311
CviAII	CATG	1 cut(s)	56
DdeI	CTNAG	1 cut(s)	507
DinI	GGCGCC	1 cut(s)	154
DpnI	GATC	3 cut(s)	60, 435, 633
DpnII	GATC	3 cut(s)	58, 433, 631
EaeI	YGGCCR	2 cut(s)	73, 619
Eam1104I	CTCTTC	3 cut(s)	167, 509, 594
EarI	CTCTTC	3 cut(s)	167, 509, 594
Eco57I	CTGAAG	2 cut(s)	186, 515
EcoT22I	ATGCAT	1 cut(s)	466
EgeI	GGCGCC	1 cut(s)	154
EheI	GGCGCC	1 cut(s)	154
FaeI	CATG	1 cut(s)	59
FaiI	YATR	3 cut(s)	9, 11, 57
FaqI	GGGAC	1 cut(s)	314
FatI	CATG	1 cut(s)	55
FauI	CCCGC	1 cut(s)	165
FauNDI	CATATG	1 cut(s)	9
Fnu4HI	GCNGC	7 cut(s)	177, 180, 396, 413, 447, 582, 627
Fsp4HI	GCNGC	7 cut(s)	177, 180, 396, 413, 447, 582, 627
FspBI	CTAG	1 cut(s)	437
GlaI	GCGC	3 cut(s)	122, 154, 430
GluI	GCNGC	7 cut(s)	177, 180, 396, 413, 447, 582, 627
HaeII	RGCGCY	2 cut(s)	124, 156
HaeIII	GGCC	4 cut(s)	75, 536, 555, 621
HgaI	GACGC	2 cut(s)	233, 311
HhaI	GCGC	3 cut(s)	123, 155, 431
Hin1I	GRCGYC	2 cut(s)	147, 153
Hin1II	CATG	1 cut(s)	59
Hin6I	GCGC	3 cut(s)	121, 153, 429
HinP1I	GCGC	3 cut(s)	121, 153, 429
HinfI	GANTC	4 cut(s)	318, 338, 344, 379
HphI	GGTGA	2 cut(s)	262, 268
Hpy166II	GTNNAC	1 cut(s)	253
Hpy188I	TCNGA	7 cut(s)	287, 317, 343, 384, 490, 510, 608
Hpy188III	TCNNGA	2 cut(s)	17, 262
Hpy8I	GTNNAC	1 cut(s)	253
Hpy99I	CGWCG	2 cut(s)	149, 152
HpyAV	CCTTC	1 cut(s)	134
HpyCH4III	ACNGT	1 cut(s)	638
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	3 cut(s)	412, 464, 584
HpyF10VI	GCNNNNNNNGC	5 cut(s)	212, 269, 404, 418, 552
HpyF3I	CTNAG	1 cut(s)	507
HpySE526I	ACGT	1 cut(s)	147
Hsp92I	GRCGYC	2 cut(s)	147, 153
Hsp92II	CATG	1 cut(s)	59
HspAI	GCGC	3 cut(s)	121, 153, 429
KasI	GGCGCC	1 cut(s)	152
Kzo9I	GATC	3 cut(s)	58, 433, 631
LguI	GCTCTTC	1 cut(s)	167
LmnI	GCTCC	4 cut(s)	103, 140, 310, 526
LpnPI	CCDG	5 cut(s)	85, 145, 233, 518, 581
Lsp1109I	GCAGC	6 cut(s)	163, 166, 424, 458, 568, 638
LweI	GCATC	3 cut(s)	382, 399, 451
MaeI	CTAG	1 cut(s)	437
MaeII	ACGT	1 cut(s)	147
MalI	GATC	3 cut(s)	60, 435, 633
MbiI	CCGCTC	1 cut(s)	160
MboI	GATC	3 cut(s)	58, 433, 631
MboII	GAAGA	5 cut(s)	154, 157, 526, 611, 661
MflI	RGATCY	1 cut(s)	433
MlsI	TGGCCA	2 cut(s)	75, 621
MluCI	AATT	4 cut(s)	27, 114, 236, 328
MluNI	TGGCCA	2 cut(s)	75, 621
Mly113I	GGCGCC	1 cut(s)	153
MlyI	GAGTC	1 cut(s)	353
MmeI	TCCRAC	2 cut(s)	407, 468
MnlI	CCTC	7 cut(s)	15, 291, 484, 488, 493, 510, 595
Mox20I	TGGCCA	2 cut(s)	75, 621
Mph1103I	ATGCAT	1 cut(s)	466
MscI	TGGCCA	2 cut(s)	75, 621
MseI	TTAA	1 cut(s)	117
Msp20I	TGGCCA	2 cut(s)	75, 621
MspA1I	CMGCKG	1 cut(s)	484
MvnI	CGCG	2 cut(s)	263, 431
MwoI	GCNNNNNNNGC	5 cut(s)	212, 269, 404, 418, 552
NarI	GGCGCC	1 cut(s)	153
NdeI	CATATG	1 cut(s)	9
NdeII	GATC	3 cut(s)	58, 433, 631
NlaIII	CATG	1 cut(s)	59
NlaIV	GGNNCC	2 cut(s)	154, 289
NruI	TCGCGA	1 cut(s)	263
NsiI	ATGCAT	1 cut(s)	466
PciSI	GCTCTTC	1 cut(s)	167
PcsI	WCGNNNNNNNCGW	2 cut(s)	309, 396
PfeI	GAWTC	3 cut(s)	318, 338, 379
PkrI	GCNGC	7 cut(s)	178, 181, 397, 414, 448, 583, 628
PleI	GAGTC	1 cut(s)	352
PluTI	GGCGCC	1 cut(s)	156
PpsI	GAGTC	1 cut(s)	352
PspN4I	GGNNCC	2 cut(s)	154, 289
PstI	CTGCAG	1 cut(s)	586
PsuI	RGATCY	1 cut(s)	433
RruI	TCGCGA	1 cut(s)	263
SapI	GCTCTTC	1 cut(s)	167
SaqAI	TTAA	1 cut(s)	117
SatI	GCNGC	7 cut(s)	177, 180, 396, 413, 447, 582, 627
Sau3AI	GATC	3 cut(s)	58, 433, 631
SchI	GAGTC	1 cut(s)	353
SetI	ASST	9 cut(s)	98, 150, 202, 252, 423, 508, 531, 583, 606
SfaNI	GCATC	3 cut(s)	382, 399, 451
SfcI	CTRYAG	3 cut(s)	97, 293, 582
SfoI	GGCGCC	1 cut(s)	154
SmlI	CTYRAG	1 cut(s)	563
SmoI	CTYRAG	1 cut(s)	563
Sse9I	AATT	4 cut(s)	27, 114, 236, 328
SsiI	CCGC	7 cut(s)	43, 158, 353, 396, 431, 482, 524
SspDI	GGCGCC	1 cut(s)	152
SspMI	CTAG	1 cut(s)	437
TaaI	ACNGT	1 cut(s)	638
TaiI	ACGT	1 cut(s)	150
TaqI	TCGA	4 cut(s)	61, 127, 190, 196
TasI	AATT	4 cut(s)	27, 114, 236, 328
TauI	GCSGC	1 cut(s)	398
TfiI	GAWTC	3 cut(s)	318, 338, 379
Tru1I	TTAA	1 cut(s)	117
Tru9I	TTAA	1 cut(s)	117
TscAI	CASTG	3 cut(s)	45, 113, 641
TseI	GCWGC	6 cut(s)	176, 179, 412, 446, 581, 626
TspDTI	ATGAA	2 cut(s)	80, 527
TspRI	CASTG	3 cut(s)	45, 113, 641
XapI	RAATTY	1 cut(s)	27
XspI	CTAG	1 cut(s)	437
ZraI	GACGTC	1 cut(s)	148
Zsp2I	ATGCAT	1 cut(s)	466

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.