Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0001458

Physical Location & Seq

Genomic Coordinates Reverse (-)

25259030 .. 25261413

Gene Structure 2384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G019410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGAGTCGTGAGACACTCATATTCGTCTCTGCGACGACGGCATTTGAATCGTTAGTGGAATCGGCGCTGCGACGACGTCGGCGTTTGAGTAGCCAGGAACAAACCAATAAAATTGCTGCTCTTACCTTCAATACCTTTGGAACGTTGCAAAGGGATTCTCCTGCAGTCAAACTCTCTCCAAATTATCCGGAACCACCTGCTAACCCTACAGAGGATGCAGCCAATTTTGCTGAACAACCCAAGCTCATGAGTGCAGCTCTGGTTCAAGCTGCGAAGCAGTTTGATGCATTAGTTGCAGCACTACCATTAGCCGACGGAGGTGAAGAAGCACAGCTCAAAAGGATTGCAGAACTGCAGGCCGAAAATGATACTGTTGGCCAAGAACTGCAGAGACAACTGGAAGCAGCAGAGGAGGAACTAAAGCAGGTCCGCGAGTTGTTCAGCCAAGCTGCAGATAATTGCTTGAATTTGAAGAAACCGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009814 GO:0009817 GO:0009889 GO:0010468 GO:0010556 GO:0016592 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0043076 GO:0043078 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0098542 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med21

Protein Analysis

161

Amino Acids

17.7

Weight (kDa)

4.86

Isoelectric Point (pI)

73.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med21	PF11221	32 - 151	1e-21	Subunit 21 of Mediator complex

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04780
fragaria_vesca	FvH4_3g18180 FvH4_3g18181 FvH4_4g21200
malus_domestica	MD10G1319700.v1.1
prunus_persica	Prupe.1G108500_v2.0.a1 Prupe.1G108500_v2.0.a1 Prupe.1G108500_v2.0.a1 Prupe.1G108500_v2.0.a1 Prupe.1G108500_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1
pyrus_communis	pycom10g27060 pycom16g12330
rosa_chinensis	RchiOBHm_Chr4g0426811 RchiOBHm_Chr5g0030661 RchiOBHm_Chr5g0030681
rosa_laevigata	RLG00000007276 RLG00000033237 RLG00000033242 RLG00000033244
rosa_multiflora	Rmu_sc0000953.1_g000011 Rmu_sc0004341.1_g000003 Rmu_sc0004963.1_g000002
rosa_roxburghii	Rroxscaffold_1G00049620 Rroxscaffold_1G00049630 Rroxscaffold_1G00049640 Rroxscaffold_5G00368780
rosa_rugosa	Rorug04G0215000 Rorug05G0120100 Rorug05G0120100
rosa_samantha	Rh4AG270000 Rh4BG276300 Rh4CG291000 Rh4DG273500 Rh5AG211500 Rh5AG211700 Rh5BG210400 Rh5BG210600 Rh5CG234200 Rh5DG215500 Rh5DG215600 Rh5DG215800 Rh5DG215900
rosa_wichuraiana	Rw4G023430 Rw5G019370 Rw5G019410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	205
AatII	GACGTC	1 cut(s)	79
Acc36I	ACCTGC	2 cut(s)	205, 415
AccII	CGCG	1 cut(s)	432
AccIII	TCCGGA	1 cut(s)	187
AciI	CCGC	1 cut(s)	430
AclI	AACGTT	1 cut(s)	143
AcoI	YGGCCR	1 cut(s)	376
AcsI	RAATTY	1 cut(s)	466
AcyI	GRCGYC	1 cut(s)	76
AfiI	CCNNNNNNNGG	1 cut(s)	211
AgsI	TTSAA	5 cut(s)	47, 130, 266, 466, 472
AjnI	CCWGG	1 cut(s)	93
AluBI	AGCT	5 cut(s)	244, 257, 269, 334, 449
AluI	AGCT	5 cut(s)	244, 257, 269, 334, 449
Alw26I	GTCTC	3 cut(s)	5, 31, 385
Aor13HI	TCCGGA	1 cut(s)	187
AoxI	GGCC	2 cut(s)	357, 376
ApeKI	GCWGC	8 cut(s)	67, 116, 218, 254, 269, 296, 404, 449
ApoI	RAATTY	1 cut(s)	466
AspLEI	GCGC	1 cut(s)	67
AspS9I	GGNCC	1 cut(s)	427
AsuHPI	GGTGA	1 cut(s)	332
AvaII	GGWCC	1 cut(s)	427
BalI	TGGCCA	1 cut(s)	378
BbvI	GCAGC	8 cut(s)	54, 103, 230, 256, 266, 308, 416, 436
BceAI	ACGGC	1 cut(s)	54
BcgI	CGANNNNNNTGC	2 cut(s)	30, 64
BciT130I	CCWGG	1 cut(s)	95
BcoDI	GTCTC	3 cut(s)	5, 31, 385
BfmI	CTRYAG	5 cut(s)	162, 207, 353, 386, 450
BfoI	RGCGCY	1 cut(s)	68
BfuAI	ACCTGC	2 cut(s)	205, 415
BisI	GCNGC	8 cut(s)	68, 117, 219, 255, 270, 297, 405, 450
BlsI	GCNGC	8 cut(s)	69, 118, 220, 256, 271, 298, 406, 451
Bme1390I	CCNGG	1 cut(s)	95
Bme18I	GGWCC	1 cut(s)	427
BmgT120I	GGNCC	1 cut(s)	427
BmiI	GGNNCC	1 cut(s)	192
BmrFI	CCNGG	1 cut(s)	95
BmsI	GCATC	2 cut(s)	205, 274
BplI	GAGNNNNNCTC	2 cut(s)	241, 273
BsaHI	GRCGYC	1 cut(s)	76
BsaWI	WCCGGW	2 cut(s)	187, 478
Bsc4I	CCNNNNNNNGG	1 cut(s)	211
Bse1I	ACTGG	1 cut(s)	402
BseAI	TCCGGA	1 cut(s)	187
BseBI	CCWGG	1 cut(s)	95
BseGI	GGATG	1 cut(s)	220
BseLI	CCNNNNNNNGG	1 cut(s)	211
BseNI	ACTGG	1 cut(s)	402
BseRI	GAGGAG	1 cut(s)	425
BseXI	GCAGC	8 cut(s)	54, 103, 230, 256, 266, 308, 416, 436
BsgI	GTGCAG	1 cut(s)	273
Bsh1236I	CGCG	1 cut(s)	432
BshFI	GGCC	2 cut(s)	359, 378
BsiSI	CCGG	2 cut(s)	188, 479
BslI	CCNNNNNNNGG	1 cut(s)	211
BsmAI	GTCTC	3 cut(s)	5, 31, 385
BsmBI	CGTCTC	1 cut(s)	31
BsnI	GGCC	2 cut(s)	359, 378
Bsp13I	TCCGGA	1 cut(s)	187
BspACI	CCGC	1 cut(s)	430
BspANI	GGCC	2 cut(s)	359, 378
BspEI	TCCGGA	1 cut(s)	187
BspFNI	CGCG	1 cut(s)	432
BspHI	TCATGA	1 cut(s)	246
BspLI	GGNNCC	1 cut(s)	192
BspMAI	CTGCAG	4 cut(s)	166, 357, 390, 454
BspMI	ACCTGC	2 cut(s)	205, 415
BsrI	ACTGG	1 cut(s)	402
BssNI	GRCGYC	1 cut(s)	76
Bst2UI	CCWGG	1 cut(s)	95
Bst4CI	ACNGT	1 cut(s)	373
BstACI	GRCGYC	1 cut(s)	76
BstAPI	GCANNNNNTGC	1 cut(s)	293
BstC8I	GCNNGC	1 cut(s)	357
BstF5I	GGATG	1 cut(s)	220
BstFNI	CGCG	1 cut(s)	432
BstH2I	RGCGCY	1 cut(s)	68
BstHHI	GCGC	1 cut(s)	67
BstMAI	GTCTC	3 cut(s)	5, 31, 385
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 227, 293
BstNI	CCWGG	1 cut(s)	95
BstSCI	CCNGG	1 cut(s)	93
BstSFI	CTRYAG	5 cut(s)	162, 207, 353, 386, 450
BstUI	CGCG	1 cut(s)	432
BstV1I	GCAGC	8 cut(s)	54, 103, 230, 256, 266, 308, 416, 436
BsuRI	GGCC	2 cut(s)	359, 378
BtsCI	GGATG	1 cut(s)	220
BveI	ACCTGC	2 cut(s)	205, 415
Cac8I	GCNNGC	1 cut(s)	357
CciI	TCATGA	1 cut(s)	246
CfoI	GCGC	1 cut(s)	67
Cfr13I	GGNCC	1 cut(s)	427
CviAII	CATG	1 cut(s)	247
EaeI	YGGCCR	1 cut(s)	376
Eco47I	GGWCC	1 cut(s)	427
EcoRII	CCWGG	1 cut(s)	93
EcoT22I	ATGCAT	1 cut(s)	289
Esp3I	CGTCTC	1 cut(s)	31
FaeI	CATG	1 cut(s)	250
FaiI	YATR	2 cut(s)	20, 248
FatI	CATG	1 cut(s)	246
Fnu4HI	GCNGC	8 cut(s)	68, 117, 219, 255, 270, 297, 405, 450
FokI	GGATG	1 cut(s)	227
Fsp4HI	GCNGC	8 cut(s)	68, 117, 219, 255, 270, 297, 405, 450
GlaI	GCGC	1 cut(s)	66
GluI	GCNGC	8 cut(s)	68, 117, 219, 255, 270, 297, 405, 450
HaeII	RGCGCY	1 cut(s)	68
HaeIII	GGCC	2 cut(s)	359, 378
HapII	CCGG	2 cut(s)	188, 479
HhaI	GCGC	1 cut(s)	67
Hin1I	GRCGYC	1 cut(s)	76
Hin1II	CATG	1 cut(s)	250
Hin6I	GCGC	1 cut(s)	65
HinP1I	GCGC	1 cut(s)	65
HinfI	GANTC	4 cut(s)	4, 47, 59, 155
HpaII	CCGG	2 cut(s)	188, 479
HphI	GGTGA	1 cut(s)	332
Hpy188III	TCNNGA	3 cut(s)	8, 188, 247
Hpy99I	CGWCG	6 cut(s)	37, 40, 75, 78, 81, 317
HpyAV	CCTTC	1 cut(s)	136
HpyCH4III	ACNGT	1 cut(s)	373
HpyCH4IV	ACGT	2 cut(s)	76, 143
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 227, 293
HpySE526I	ACGT	2 cut(s)	76, 143
Hsp92I	GRCGYC	1 cut(s)	76
Hsp92II	CATG	1 cut(s)	250
HspAI	GCGC	1 cut(s)	65
Kpn2I	TCCGGA	1 cut(s)	187
LpnPI	CCDG	9 cut(s)	80, 107, 174, 201, 210, 245, 341, 383, 410
Lsp1109I	GCAGC	8 cut(s)	54, 103, 230, 256, 266, 308, 416, 436
LweI	GCATC	2 cut(s)	205, 274
MaeII	ACGT	2 cut(s)	76, 143
MboII	GAAGA	2 cut(s)	335, 484
MlsI	TGGCCA	1 cut(s)	378
MluCI	AATT	5 cut(s)	111, 181, 223, 457, 466
MluNI	TGGCCA	1 cut(s)	378
MlyI	GAGTC	1 cut(s)	13
MnlI	CCTC	4 cut(s)	205, 311, 403, 406
Mox20I	TGGCCA	1 cut(s)	378
Mph1103I	ATGCAT	1 cut(s)	289
MroI	TCCGGA	1 cut(s)	187
MscI	TGGCCA	1 cut(s)	378
MseI	TTAA	1 cut(s)	484
Msp20I	TGGCCA	1 cut(s)	378
MspI	CCGG	2 cut(s)	188, 479
MspR9I	CCNGG	1 cut(s)	95
MvaI	CCWGG	1 cut(s)	95
MvnI	CGCG	1 cut(s)	432
MwoI	GCNNNNNNNGC	3 cut(s)	38, 227, 293
NlaIII	CATG	1 cut(s)	250
NlaIV	GGNNCC	1 cut(s)	192
NsiI	ATGCAT	1 cut(s)	289
PagI	TCATGA	1 cut(s)	246
PaqCI	CACCTGC	1 cut(s)	205
PcsI	WCGNNNNNNNCGW	1 cut(s)	79
PfeI	GAWTC	3 cut(s)	47, 59, 155
PflFI	GACNNNGTC	1 cut(s)	75
PkrI	GCNGC	8 cut(s)	69, 118, 220, 256, 271, 298, 406, 451
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
Psp1406I	AACGTT	1 cut(s)	143
Psp6I	CCWGG	1 cut(s)	93
PspGI	CCWGG	1 cut(s)	93
PspN4I	GGNNCC	1 cut(s)	192
PspPI	GGNCC	1 cut(s)	427
PstI	CTGCAG	4 cut(s)	166, 357, 390, 454
PsyI	GACNNNGTC	1 cut(s)	75
SaqAI	TTAA	1 cut(s)	484
SatI	GCNGC	8 cut(s)	68, 117, 219, 255, 270, 297, 405, 450
Sau96I	GGNCC	1 cut(s)	427
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	1 cut(s)	95
SfaNI	GCATC	2 cut(s)	205, 274
SfcI	CTRYAG	5 cut(s)	162, 207, 353, 386, 450
SinI	GGWCC	1 cut(s)	427
Sse9I	AATT	5 cut(s)	111, 181, 223, 457, 466
SsiI	CCGC	1 cut(s)	430
StyD4I	CCNGG	1 cut(s)	93
TaaI	ACNGT	1 cut(s)	373
TaiI	ACGT	2 cut(s)	79, 146
TasI	AATT	5 cut(s)	111, 181, 223, 457, 466
TfiI	GAWTC	3 cut(s)	47, 59, 155
Tru1I	TTAA	1 cut(s)	484
Tru9I	TTAA	1 cut(s)	484
TseI	GCWGC	8 cut(s)	67, 116, 218, 254, 269, 296, 404, 449
TspGWI	ACGGA	1 cut(s)	330
Tth111I	GACNNNGTC	1 cut(s)	75
VpaK11BI	GGWCC	1 cut(s)	427
XapI	RAATTY	1 cut(s)	466
ZraI	GACGTC	1 cut(s)	77
Zsp2I	ATGCAT	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.