Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001458

Physical Location & Seq

Genomic Coordinates Forward (+)

69990215 .. 69996864

Gene Structure 6650 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00049630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGATTCTCCACCAGGTTTCTCTTTGAAGCGGAAACGTGAACATCGACGTAAGCATGATAAGTCAGAACATGAAGAGAATGCAACCGCAAAGCCTGGGCCCGACATCTTGAAGTCAAACAAACAGAGTACGAGTACAAGCAAGGTTGAGGTAGGTCCAGCGTTTAATGGTGTTGTGGAAGAATATTTCAATGGCGTGGTTCAAATGAAGGTGCAGGTAGGAGATACTGAGATGAAGGGTGTTGCATTTTATCCCGTCCCTCCGCCAAATGTTGTTCCCCCTGATATTAAGATGGTGACGAGAAAGGACCTTGCTATACCAGCCGTGCATTCTTCTTTACTTCATCGCTCAGCACAAGGTAATAGGCAACGTGCTGAGGTGAAAAAGGAGAAACCTGCAGATCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

135

Amino Acids

14.96

Weight (kDa)

9.62

Isoelectric Point (pI)

50.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04780
fragaria_vesca	FvH4_3g18180 FvH4_3g18181 FvH4_4g21200
malus_domestica	MD10G1319700.v1.1
prunus_persica	Prupe.1G108500_v2.0.a1 Prupe.1G108500_v2.0.a1 Prupe.1G108500_v2.0.a1 Prupe.1G108500_v2.0.a1 Prupe.1G108500_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1
pyrus_communis	pycom10g27060 pycom16g12330
rosa_chinensis	RchiOBHm_Chr4g0426811 RchiOBHm_Chr5g0030661 RchiOBHm_Chr5g0030681
rosa_laevigata	RLG00000007276 RLG00000033237 RLG00000033242 RLG00000033244
rosa_multiflora	Rmu_sc0000953.1_g000011 Rmu_sc0004341.1_g000003 Rmu_sc0004963.1_g000002
rosa_roxburghii	Rroxscaffold_1G00049620 Rroxscaffold_1G00049630 Rroxscaffold_1G00049640 Rroxscaffold_5G00368780
rosa_rugosa	Rorug04G0215000 Rorug05G0120100 Rorug05G0120100
rosa_samantha	Rh4AG270000 Rh4BG276300 Rh4CG291000 Rh4DG273500 Rh5AG211500 Rh5AG211700 Rh5BG210400 Rh5BG210600 Rh5CG234200 Rh5DG215500 Rh5DG215600 Rh5DG215800 Rh5DG215900
rosa_wichuraiana	Rw4G023430 Rw5G019370 Rw5G019410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	205, 403
AciI	CCGC	3 cut(s)	31, 87, 263
AclWI	GGATC	1 cut(s)	395
AfaI	GTAC	2 cut(s)	130, 136
AgsI	TTSAA	4 cut(s)	28, 112, 190, 203
AjnI	CCWGG	2 cut(s)	13, 94
AlwI	GGATC	1 cut(s)	395
AoxI	GGCC	1 cut(s)	98
ApaI	GGGCCC	1 cut(s)	102
AspS9I	GGNCC	4 cut(s)	98, 99, 155, 307
AsuHPI	GGTGA	2 cut(s)	307, 391
AvaII	GGWCC	2 cut(s)	155, 307
BaeGI	GKGCMC	1 cut(s)	102
BanII	GRGCYC	1 cut(s)	102
BbvCI	CCTCAGC	1 cut(s)	375
BccI	CCATC	1 cut(s)	286
BceAI	ACGGC	1 cut(s)	308
BciT130I	CCWGG	2 cut(s)	15, 96
BfmI	CTRYAG	1 cut(s)	396
BfuAI	ACCTGC	2 cut(s)	205, 403
BlpI	GCTNAGC	1 cut(s)	349
Bme1390I	CCNGG	2 cut(s)	15, 96
Bme18I	GGWCC	2 cut(s)	155, 307
BmgT120I	GGNCC	4 cut(s)	98, 99, 155, 307
BmiI	GGNNCC	1 cut(s)	100
BmrFI	CCNGG	2 cut(s)	15, 96
Bpu10I	CCTNAGC	1 cut(s)	375
Bpu1102I	GCTNAGC	1 cut(s)	349
BsaJI	CCNNGG	1 cut(s)	95
BseBI	CCWGG	2 cut(s)	15, 96
BseDI	CCNNGG	1 cut(s)	95
BseMII	CTCAG	3 cut(s)	219, 363, 366
BseSI	GKGCMC	1 cut(s)	102
BsgI	GTGCAG	1 cut(s)	233
BshFI	GGCC	1 cut(s)	100
BslFI	GGGAC	1 cut(s)	242
BsmFI	GGGAC	1 cut(s)	242
BsmI	GAATGC	2 cut(s)	85, 328
BsnI	GGCC	1 cut(s)	100
Bsp120I	GGGCCC	1 cut(s)	98
Bsp1286I	GDGCHC	1 cut(s)	102
Bsp143I	GATC	1 cut(s)	400
Bsp1720I	GCTNAGC	1 cut(s)	349
BspACI	CCGC	3 cut(s)	31, 87, 263
BspANI	GGCC	1 cut(s)	100
BspCNI	CTCAG	3 cut(s)	220, 362, 367
BspLI	GGNNCC	1 cut(s)	100
BspMAI	CTGCAG	1 cut(s)	400
BspMI	ACCTGC	2 cut(s)	205, 403
BspPI	GGATC	1 cut(s)	395
BssECI	CCNNGG	1 cut(s)	95
BssMI	GATC	1 cut(s)	400
Bst2UI	CCWGG	2 cut(s)	15, 96
Bst6I	CTCTTC	1 cut(s)	69
BstDEI	CTNAG	4 cut(s)	228, 349, 375, 405
BstKTI	GATC	1 cut(s)	403
BstMBI	GATC	1 cut(s)	400
BstMWI	GCNNNNNNNGC	1 cut(s)	320
BstNI	CCWGG	2 cut(s)	15, 96
BstSCI	CCNGG	2 cut(s)	13, 94
BstSFI	CTRYAG	1 cut(s)	396
BstSLI	GKGCMC	1 cut(s)	102
BstX2I	RGATCY	1 cut(s)	400
BstYI	RGATCY	1 cut(s)	400
BsuRI	GGCC	1 cut(s)	100
BtgZI	GCGATG	1 cut(s)	329
BveI	ACCTGC	2 cut(s)	205, 403
Cfr13I	GGNCC	4 cut(s)	98, 99, 155, 307
CsiI	ACCWGGT	1 cut(s)	13
Csp6I	GTAC	2 cut(s)	129, 135
CviAII	CATG	2 cut(s)	56, 71
CviJI	RGCY	3 cut(s)	94, 100, 323
CviKI_1	RGCY	3 cut(s)	94, 100, 323
CviQI	GTAC	2 cut(s)	129, 135
DdeI	CTNAG	4 cut(s)	228, 349, 375, 405
DpnI	GATC	1 cut(s)	402
DpnII	GATC	1 cut(s)	400
Eam1104I	CTCTTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	69
EciI	GGCGGA	1 cut(s)	252
Eco24I	GRGCYC	1 cut(s)	102
Eco47I	GGWCC	2 cut(s)	155, 307
EcoO109I	RGGNCCY	1 cut(s)	307
EcoRII	CCWGG	2 cut(s)	13, 94
EcoT38I	GRGCYC	1 cut(s)	102
FaeI	CATG	2 cut(s)	59, 74
FaiI	YATR	3 cut(s)	57, 72, 317
FaqI	GGGAC	1 cut(s)	242
FatI	CATG	2 cut(s)	55, 70
FriOI	GRGCYC	1 cut(s)	102
HaeIII	GGCC	1 cut(s)	100
Hin1II	CATG	2 cut(s)	59, 74
HinfI	GANTC	1 cut(s)	5
HphI	GGTGA	2 cut(s)	307, 391
Hpy166II	GTNNAC	1 cut(s)	41
Hpy188I	TCNGA	1 cut(s)	67
Hpy188III	TCNNGA	1 cut(s)	109
Hpy8I	GTNNAC	1 cut(s)	41
Hpy99I	CGWCG	1 cut(s)	51
HpyAV	CCTTC	2 cut(s)	202, 229
HpyCH4IV	ACGT	3 cut(s)	37, 49, 370
HpyCH4V	TGCA	5 cut(s)	83, 214, 245, 328, 398
HpyF10VI	GCNNNNNNNGC	1 cut(s)	320
HpyF3I	CTNAG	4 cut(s)	228, 349, 375, 405
HpySE526I	ACGT	3 cut(s)	37, 49, 370
Hsp92II	CATG	2 cut(s)	59, 74
Kzo9I	GATC	1 cut(s)	400
LpnPI	CCDG	7 cut(s)	27, 81, 108, 171, 200, 294, 333
MabI	ACCWGGT	1 cut(s)	13
MaeII	ACGT	3 cut(s)	37, 49, 370
MaeIII	GTNAC	1 cut(s)	295
MalI	GATC	1 cut(s)	402
MboI	GATC	1 cut(s)	400
MboII	GAAGA	3 cut(s)	86, 191, 324
MflI	RGATCY	1 cut(s)	400
MhlI	GDGCHC	1 cut(s)	102
MnlI	CCTC	3 cut(s)	142, 270, 370
MseI	TTAA	2 cut(s)	165, 288
MspR9I	CCNGG	2 cut(s)	15, 96
Mva1269I	GAATGC	2 cut(s)	85, 328
MvaI	CCWGG	2 cut(s)	15, 96
MwoI	GCNNNNNNNGC	1 cut(s)	320
NdeII	GATC	1 cut(s)	400
NlaIII	CATG	2 cut(s)	59, 74
NlaIV	GGNNCC	1 cut(s)	100
NmuCI	GTSAC	1 cut(s)	295
PcsI	WCGNNNNNNNCGW	1 cut(s)	43
PctI	GAATGC	2 cut(s)	85, 328
PfeI	GAWTC	1 cut(s)	5
PpuMI	RGGWCCY	1 cut(s)	307
Psp5II	RGGWCCY	1 cut(s)	307
Psp6I	CCWGG	2 cut(s)	13, 94
PspGI	CCWGG	2 cut(s)	13, 94
PspN4I	GGNNCC	1 cut(s)	100
PspOMI	GGGCCC	1 cut(s)	98
PspPI	GGNCC	4 cut(s)	98, 99, 155, 307
PspPPI	RGGWCCY	1 cut(s)	307
PstI	CTGCAG	1 cut(s)	400
PsuI	RGATCY	1 cut(s)	400
RsaI	GTAC	2 cut(s)	130, 136
RsaNI	GTAC	2 cut(s)	129, 135
SaqAI	TTAA	2 cut(s)	165, 288
Sau3AI	GATC	1 cut(s)	400
Sau96I	GGNCC	4 cut(s)	98, 99, 155, 307
ScrFI	CCNGG	2 cut(s)	15, 96
SduI	GDGCHC	1 cut(s)	102
SexAI	ACCWGGT	1 cut(s)	13
SfcI	CTRYAG	1 cut(s)	396
SinI	GGWCC	2 cut(s)	155, 307
SsiI	CCGC	3 cut(s)	31, 87, 263
SspI	AATATT	1 cut(s)	185
StyD4I	CCNGG	2 cut(s)	13, 94
TaiI	ACGT	3 cut(s)	40, 52, 373
TaqI	TCGA	1 cut(s)	46
TatI	WGTACW	1 cut(s)	134
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	2 cut(s)	165, 288
Tru9I	TTAA	2 cut(s)	165, 288
TseFI	GTSAC	1 cut(s)	295
Tsp45I	GTSAC	1 cut(s)	295
TspDTI	ATGAA	4 cut(s)	87, 221, 248, 332
VpaK11BI	GGWCC	2 cut(s)	155, 307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.