Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0001458

Physical Location & Seq

Genomic Coordinates Forward (+)

28148072 .. 28149075

Gene Structure 1004 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g27060.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGATATAATCTCCCAATTACAGGGACAAGTGAACACAATTGCTTCTCTTACCTTCAATACCTTTGGGACACTACAAAGGGATTCTCCTCCAGTCCGACTTACACCAAATTACCCAGAACCGCCAGCTAATCCTACCGAGGACGCTGCTGATTTTGCCCAACAACCCAAGCTCATGGGGGCAGCTCTTGTTAAGGCTGCTAAGCAGTTTGATGCATTAGTTGCAGCACTTCCATTAGCCGATGGAGGTGAAGAAGGGCAGCTGAAACGGATTGCAGAACTGCAGGCCGAAAATGATGCTGTCGGCCAAGAACTCCAGAGACAACTCGAAGCTGCAGAGAAAGAATTAAGGGAGGTCCGCGAATTGTTCGGCCAATCGGTAGAAAATTGCTTGAACTTGAAGAAACCCGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009814 GO:0009817 GO:0009889 GO:0010468 GO:0010556 GO:0016592 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0043076 GO:0043078 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0098542 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med21

Protein Analysis

138

Amino Acids

14.91

Weight (kDa)

4.57

Isoelectric Point (pI)

50.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04780
fragaria_vesca	FvH4_3g18180 FvH4_3g18181 FvH4_4g21200
malus_domestica	MD10G1319700.v1.1
prunus_persica	Prupe.1G108500_v2.0.a1 Prupe.1G108500_v2.0.a1 Prupe.1G108500_v2.0.a1 Prupe.1G108500_v2.0.a1 Prupe.1G108500_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1
pyrus_communis	pycom10g27060 pycom16g12330
rosa_chinensis	RchiOBHm_Chr4g0426811 RchiOBHm_Chr5g0030661 RchiOBHm_Chr5g0030681
rosa_laevigata	RLG00000007276 RLG00000033237 RLG00000033242 RLG00000033244
rosa_multiflora	Rmu_sc0000953.1_g000011 Rmu_sc0004341.1_g000003 Rmu_sc0004963.1_g000002
rosa_roxburghii	Rroxscaffold_1G00049620 Rroxscaffold_1G00049630 Rroxscaffold_1G00049640 Rroxscaffold_5G00368780
rosa_rugosa	Rorug04G0215000 Rorug05G0120100 Rorug05G0120100
rosa_samantha	Rh4AG270000 Rh4BG276300 Rh4CG291000 Rh4DG273500 Rh5AG211500 Rh5AG211700 Rh5BG210400 Rh5BG210600 Rh5CG234200 Rh5DG215500 Rh5DG215600 Rh5DG215800 Rh5DG215900
rosa_wichuraiana	Rw4G023430 Rw5G019370 Rw5G019410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	360
AciI	CCGC	2 cut(s)	122, 358
AcoI	YGGCCR	2 cut(s)	304, 370
AfiI	CCNNNNNNNGG	1 cut(s)	22
AgsI	TTSAA	3 cut(s)	58, 394, 400
AluBI	AGCT	5 cut(s)	128, 172, 185, 262, 332
AluI	AGCT	5 cut(s)	128, 172, 185, 262, 332
Alw26I	GTCTC	1 cut(s)	313
AoxI	GGCC	3 cut(s)	285, 304, 370
ApeKI	GCWGC	6 cut(s)	146, 182, 197, 224, 259, 332
AspS9I	GGNCC	1 cut(s)	355
AsuHPI	GGTGA	1 cut(s)	260
AvaII	GGWCC	1 cut(s)	355
BbvI	GCAGC	6 cut(s)	133, 184, 194, 236, 271, 319
BccI	CCATC	1 cut(s)	236
BcgI	CGANNNNNNTGC	4 cut(s)	128, 162, 278, 312
BcoDI	GTCTC	1 cut(s)	313
BfmI	CTRYAG	2 cut(s)	281, 333
BisI	GCNGC	6 cut(s)	147, 183, 198, 225, 260, 333
BlpI	GCTNAGC	1 cut(s)	201
BlsI	GCNGC	6 cut(s)	148, 184, 199, 226, 261, 334
Bme18I	GGWCC	1 cut(s)	355
BmgT120I	GGNCC	1 cut(s)	355
BmsI	GCATC	2 cut(s)	202, 286
BpmI	CTGGAG	2 cut(s)	75, 299
Bpu1102I	GCTNAGC	1 cut(s)	201
BsaJI	CCNNGG	1 cut(s)	138
Bsc4I	CCNNNNNNNGG	1 cut(s)	22
Bse1I	ACTGG	1 cut(s)	92
BseDI	CCNNGG	1 cut(s)	138
BseLI	CCNNNNNNNGG	1 cut(s)	22
BseNI	ACTGG	1 cut(s)	92
BseRI	GAGGAG	1 cut(s)	78
BseXI	GCAGC	6 cut(s)	133, 184, 194, 236, 271, 319
Bsh1236I	CGCG	1 cut(s)	360
BshFI	GGCC	3 cut(s)	287, 306, 372
BslFI	GGGAC	2 cut(s)	39, 82
BslI	CCNNNNNNNGG	1 cut(s)	22
BsmAI	GTCTC	1 cut(s)	313
BsmFI	GGGAC	2 cut(s)	39, 82
BsnI	GGCC	3 cut(s)	287, 306, 372
Bsp1720I	GCTNAGC	1 cut(s)	201
BspACI	CCGC	2 cut(s)	122, 358
BspANI	GGCC	3 cut(s)	287, 306, 372
BspFNI	CGCG	1 cut(s)	360
BspMAI	CTGCAG	2 cut(s)	285, 337
BsrI	ACTGG	1 cut(s)	92
BssECI	CCNNGG	1 cut(s)	138
BstAPI	GCANNNNNTGC	1 cut(s)	221
BstC8I	GCNNGC	2 cut(s)	126, 285
BstDEI	CTNAG	1 cut(s)	201
BstFNI	CGCG	1 cut(s)	360
BstMAI	GTCTC	1 cut(s)	313
BstMWI	GCNNNNNNNGC	2 cut(s)	155, 221
BstSFI	CTRYAG	2 cut(s)	281, 333
BstUI	CGCG	1 cut(s)	360
BstV1I	GCAGC	6 cut(s)	133, 184, 194, 236, 271, 319
BstXI	CCANNNNNNTGG	1 cut(s)	175
BsuRI	GGCC	3 cut(s)	287, 306, 372
Cac8I	GCNNGC	2 cut(s)	126, 285
Cfr13I	GGNCC	1 cut(s)	355
CseI	GACGC	1 cut(s)	152
CviAII	CATG	1 cut(s)	175
DdeI	CTNAG	1 cut(s)	201
EaeI	YGGCCR	2 cut(s)	304, 370
Eco47I	GGWCC	1 cut(s)	355
EcoT22I	ATGCAT	1 cut(s)	217
FaeI	CATG	1 cut(s)	178
FaiI	YATR	2 cut(s)	8, 176
FaqI	GGGAC	2 cut(s)	39, 82
FatI	CATG	1 cut(s)	174
Fnu4HI	GCNGC	6 cut(s)	147, 183, 198, 225, 260, 333
Fsp4HI	GCNGC	6 cut(s)	147, 183, 198, 225, 260, 333
GluI	GCNGC	6 cut(s)	147, 183, 198, 225, 260, 333
GsuI	CTGGAG	2 cut(s)	75, 299
HaeIII	GGCC	3 cut(s)	287, 306, 372
HgaI	GACGC	1 cut(s)	152
Hin1II	CATG	1 cut(s)	178
HinfI	GANTC	1 cut(s)	83
HphI	GGTGA	1 cut(s)	260
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188I	TCNGA	1 cut(s)	98
Hpy188III	TCNNGA	1 cut(s)	316
Hpy8I	GTNNAC	1 cut(s)	34
HpyAV	CCTTC	2 cut(s)	64, 248
HpyCH4V	TGCA	5 cut(s)	215, 224, 275, 283, 335
HpyF10VI	GCNNNNNNNGC	2 cut(s)	155, 221
HpyF3I	CTNAG	1 cut(s)	201
Hsp92II	CATG	1 cut(s)	178
LpnPI	CCDG	6 cut(s)	8, 105, 129, 138, 269, 329
Lsp1109I	GCAGC	6 cut(s)	133, 184, 194, 236, 271, 319
LweI	GCATC	2 cut(s)	202, 286
MboII	GAAGA	2 cut(s)	263, 412
MfeI	CAATTG	1 cut(s)	39
MluCI	AATT	6 cut(s)	17, 39, 109, 344, 362, 385
MmeI	TCCRAC	1 cut(s)	121
MnlI	CCTC	4 cut(s)	99, 133, 239, 346
Mph1103I	ATGCAT	1 cut(s)	217
MseI	TTAA	2 cut(s)	192, 347
MspA1I	CMGCKG	1 cut(s)	262
MunI	CAATTG	1 cut(s)	39
MvnI	CGCG	1 cut(s)	360
MwoI	GCNNNNNNNGC	2 cut(s)	155, 221
NlaIII	CATG	1 cut(s)	178
NsiI	ATGCAT	1 cut(s)	217
PfeI	GAWTC	1 cut(s)	83
PkrI	GCNGC	6 cut(s)	148, 184, 199, 226, 261, 334
PspPI	GGNCC	1 cut(s)	355
PstI	CTGCAG	2 cut(s)	285, 337
PvuII	CAGCTG	1 cut(s)	262
SaqAI	TTAA	2 cut(s)	192, 347
SatI	GCNGC	6 cut(s)	147, 183, 198, 225, 260, 333
Sau96I	GGNCC	1 cut(s)	355
SetI	ASST	9 cut(s)	56, 65, 130, 174, 187, 250, 264, 334, 357
SfaNI	GCATC	2 cut(s)	202, 286
SfcI	CTRYAG	2 cut(s)	281, 333
SinI	GGWCC	1 cut(s)	355
Sse9I	AATT	6 cut(s)	17, 39, 109, 344, 362, 385
SsiI	CCGC	2 cut(s)	122, 358
TaqI	TCGA	1 cut(s)	327
TasI	AATT	6 cut(s)	17, 39, 109, 344, 362, 385
TfiI	GAWTC	1 cut(s)	83
Tru1I	TTAA	2 cut(s)	192, 347
Tru9I	TTAA	2 cut(s)	192, 347
TseI	GCWGC	6 cut(s)	146, 182, 197, 224, 259, 332
TspGWI	ACGGA	1 cut(s)	283
VpaK11BI	GGWCC	1 cut(s)	355
Zsp2I	ATGCAT	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.