Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001458

Physical Location & Seq

Genomic Coordinates Forward (+)

24735655 .. 24739104

Gene Structure 3450 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033237

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGATTCTCCACCAGGTTTCTCTTTGAAGCGGAAACGTGAACATCGACGTAAGCATGATAAGTCAGAACATGAAGAGAATGCAACTGCAAAGCCTGGACCCGACATCTTGAAGTCAAACAAACAGAGTACGAGTACAAGCAAGGTTGAGGTAGGTCCAGCGTTTAATGGTGTTGTGGAAGAATATTTTGACGGCGGGGTTCGAATGAAGGTGAAGGTAGGAGATACTGAGATGAAGGGTGTTGCATTTTATCCCGTCCCTCCGCCAAATGTTGTTACCCCTGATATTAAGATGGTGACAAGAAAGGACCTTGCTATACCAGCCGTGCATTCTTCTTTACCTCATCGCTCAGCACAAGCGAGTGGTATCGGCGGCTGCGACAACGACGGCGTTGGAGTAGCCGGGCGGAGGGATTCTCCTGCTGTCAAACTTTCTCCAAATTATCCAGAACCACCTGCTAACCCGACAGAGGATGCAGCAAATTTTGCTGAACAACCCAAGCTCATGAGTGCAGCTCTGGTTCAAGCTGCAAAGCAGTTTGATGCATTAGTTGCAGCACTGCCCTTAGCCGACGGAGGTGAAGAAGCACAGCTCAAAAGGATTGCAGAACTGCAGGCTGAAAATGATACTGTTGGCCAAGAACTCCAGAGACAACTGGAAGCAGCAGAGGAGGAACTAAAGCAGGTCCGCGAGTTGTTCAGCCAAGCTGCAGATAATTGTTTGAATTTGAAGAAACCAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009814 GO:0009817 GO:0009889 GO:0010468 GO:0010556 GO:0016592 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0043076 GO:0043078 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0098542 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med21

Protein Analysis

248

Amino Acids

26.64

Weight (kDa)

5.66

Isoelectric Point (pI)

57.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med21	PF11221	139 - 237	9.7e-18	Subunit 21 of Mediator complex

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04780
fragaria_vesca	FvH4_3g18180 FvH4_3g18181 FvH4_4g21200
malus_domestica	MD10G1319700.v1.1
prunus_persica	Prupe.1G108500_v2.0.a1 Prupe.1G108500_v2.0.a1 Prupe.1G108500_v2.0.a1 Prupe.1G108500_v2.0.a1 Prupe.1G108500_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1
pyrus_communis	pycom10g27060 pycom16g12330
rosa_chinensis	RchiOBHm_Chr4g0426811 RchiOBHm_Chr5g0030661 RchiOBHm_Chr5g0030681
rosa_laevigata	RLG00000007276 RLG00000033237 RLG00000033242 RLG00000033244
rosa_multiflora	Rmu_sc0000953.1_g000011 Rmu_sc0004341.1_g000003 Rmu_sc0004963.1_g000002
rosa_roxburghii	Rroxscaffold_1G00049620 Rroxscaffold_1G00049630 Rroxscaffold_1G00049640 Rroxscaffold_5G00368780
rosa_rugosa	Rorug04G0215000 Rorug05G0120100 Rorug05G0120100
rosa_samantha	Rh4AG270000 Rh4BG276300 Rh4CG291000 Rh4DG273500 Rh5AG211500 Rh5AG211700 Rh5BG210400 Rh5BG210600 Rh5CG234200 Rh5DG215500 Rh5DG215600 Rh5DG215800 Rh5DG215900
rosa_wichuraiana	Rw4G023430 Rw5G019370 Rw5G019410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	463
Acc36I	ACCTGC	2 cut(s)	463, 673
AccII	CGCG	1 cut(s)	690
AciI	CCGC	6 cut(s)	31, 195, 263, 372, 406, 688
AcoI	YGGCCR	1 cut(s)	634
AcsI	RAATTY	2 cut(s)	481, 724
AfaI	GTAC	2 cut(s)	130, 136
AfiI	CCNNNNNNNGG	2 cut(s)	408, 469
AgsI	TTSAA	5 cut(s)	28, 112, 524, 724, 730
AjnI	CCWGG	2 cut(s)	13, 94
AluBI	AGCT	5 cut(s)	502, 515, 527, 592, 707
AluI	AGCT	5 cut(s)	502, 515, 527, 592, 707
Alw26I	GTCTC	1 cut(s)	643
AoxI	GGCC	1 cut(s)	634
ApeKI	GCWGC	7 cut(s)	375, 476, 512, 527, 554, 662, 707
ApoI	RAATTY	2 cut(s)	481, 724
AspS9I	GGNCC	4 cut(s)	98, 155, 307, 685
AsuC2I	CCSGG	1 cut(s)	403
AsuHPI	GGTGA	3 cut(s)	223, 307, 590
AsuII	TTCGAA	1 cut(s)	202
AvaII	GGWCC	4 cut(s)	98, 155, 307, 685
BalI	TGGCCA	1 cut(s)	636
BbvI	GCAGC	7 cut(s)	362, 488, 514, 524, 566, 674, 694
BccI	CCATC	1 cut(s)	286
BceAI	ACGGC	3 cut(s)	208, 308, 403
BciT130I	CCWGG	2 cut(s)	15, 96
BcnI	CCSGG	1 cut(s)	403
BcoDI	GTCTC	1 cut(s)	643
BfmI	CTRYAG	2 cut(s)	611, 708
BfuAI	ACCTGC	2 cut(s)	463, 673
BisI	GCNGC	8 cut(s)	373, 376, 477, 513, 528, 555, 663, 708
BlpI	GCTNAGC	1 cut(s)	349
BlsI	GCNGC	8 cut(s)	374, 377, 478, 514, 529, 556, 664, 709
Bme1390I	CCNGG	3 cut(s)	15, 96, 403
Bme18I	GGWCC	4 cut(s)	98, 155, 307, 685
BmgT120I	GGNCC	4 cut(s)	98, 155, 307, 685
BmiI	GGNNCC	1 cut(s)	100
BmrFI	CCNGG	3 cut(s)	15, 96, 403
BmsI	GCATC	2 cut(s)	463, 532
BplI	GAGNNNNNCTC	4 cut(s)	400, 432, 499, 531
BpmI	CTGGAG	1 cut(s)	629
Bpu10I	CCTNAGC	1 cut(s)	565
Bpu1102I	GCTNAGC	1 cut(s)	349
Bpu14I	TTCGAA	1 cut(s)	202
BpuMI	CCSGG	1 cut(s)	403
Bsc4I	CCNNNNNNNGG	2 cut(s)	408, 469
Bse1I	ACTGG	1 cut(s)	660
BseBI	CCWGG	2 cut(s)	15, 96
BseGI	GGATG	1 cut(s)	478
BseLI	CCNNNNNNNGG	2 cut(s)	408, 469
BseMII	CTCAG	2 cut(s)	219, 363
BseNI	ACTGG	1 cut(s)	660
BseRI	GAGGAG	1 cut(s)	683
BseXI	GCAGC	7 cut(s)	362, 488, 514, 524, 566, 674, 694
BsgI	GTGCAG	1 cut(s)	531
Bsh1236I	CGCG	1 cut(s)	690
BshFI	GGCC	1 cut(s)	636
BsiSI	CCGG	1 cut(s)	402
BslFI	GGGAC	1 cut(s)	242
BslI	CCNNNNNNNGG	2 cut(s)	408, 469
BsmAI	GTCTC	1 cut(s)	643
BsmFI	GGGAC	1 cut(s)	242
BsmI	GAATGC	2 cut(s)	85, 328
BsnI	GGCC	1 cut(s)	636
Bsp119I	TTCGAA	1 cut(s)	202
Bsp1720I	GCTNAGC	1 cut(s)	349
BspACI	CCGC	6 cut(s)	31, 195, 263, 372, 406, 688
BspANI	GGCC	1 cut(s)	636
BspCNI	CTCAG	2 cut(s)	220, 362
BspFNI	CGCG	1 cut(s)	690
BspHI	TCATGA	1 cut(s)	504
BspLI	GGNNCC	1 cut(s)	100
BspMAI	CTGCAG	2 cut(s)	615, 712
BspMI	ACCTGC	2 cut(s)	463, 673
BspT104I	TTCGAA	1 cut(s)	202
BsrI	ACTGG	1 cut(s)	660
Bst2UI	CCWGG	2 cut(s)	15, 96
Bst4CI	ACNGT	1 cut(s)	631
Bst6I	CTCTTC	1 cut(s)	69
BstAPI	GCANNNNNTGC	2 cut(s)	485, 551
BstBI	TTCGAA	1 cut(s)	202
BstC8I	GCNNGC	1 cut(s)	615
BstDEI	CTNAG	3 cut(s)	228, 349, 565
BstF5I	GGATG	1 cut(s)	478
BstFNI	CGCG	1 cut(s)	690
BstMAI	GTCTC	1 cut(s)	643
BstMWI	GCNNNNNNNGC	3 cut(s)	320, 485, 551
BstNI	CCWGG	2 cut(s)	15, 96
BstSCI	CCNGG	3 cut(s)	13, 94, 401
BstSFI	CTRYAG	2 cut(s)	611, 708
BstUI	CGCG	1 cut(s)	690
BstV1I	GCAGC	7 cut(s)	362, 488, 514, 524, 566, 674, 694
BsuRI	GGCC	1 cut(s)	636
BtgZI	GCGATG	1 cut(s)	329
BtsCI	GGATG	1 cut(s)	478
BtsI	GCAGTG	1 cut(s)	557
BtsIMutI	CAGTG	1 cut(s)	557
BveI	ACCTGC	2 cut(s)	463, 673
Cac8I	GCNNGC	1 cut(s)	615
CciI	TCATGA	1 cut(s)	504
Cfr13I	GGNCC	4 cut(s)	98, 155, 307, 685
CsiI	ACCWGGT	1 cut(s)	13
Csp6I	GTAC	2 cut(s)	129, 135
CviAII	CATG	3 cut(s)	56, 71, 505
CviQI	GTAC	2 cut(s)	129, 135
DdeI	CTNAG	3 cut(s)	228, 349, 565
EaeI	YGGCCR	1 cut(s)	634
Eam1104I	CTCTTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	69
EciI	GGCGGA	2 cut(s)	252, 421
Eco47I	GGWCC	4 cut(s)	98, 155, 307, 685
EcoO109I	RGGNCCY	1 cut(s)	307
EcoRII	CCWGG	2 cut(s)	13, 94
EcoT22I	ATGCAT	1 cut(s)	547
FaeI	CATG	3 cut(s)	59, 74, 508
FaiI	YATR	4 cut(s)	57, 72, 317, 506
FaqI	GGGAC	1 cut(s)	242
FatI	CATG	3 cut(s)	55, 70, 504
FauI	CCCGC	1 cut(s)	188
Fnu4HI	GCNGC	8 cut(s)	373, 376, 477, 513, 528, 555, 663, 708
FokI	GGATG	1 cut(s)	485
Fsp4HI	GCNGC	8 cut(s)	373, 376, 477, 513, 528, 555, 663, 708
GluI	GCNGC	8 cut(s)	373, 376, 477, 513, 528, 555, 663, 708
GsuI	CTGGAG	1 cut(s)	629
HaeIII	GGCC	1 cut(s)	636
HapII	CCGG	1 cut(s)	402
Hin1II	CATG	3 cut(s)	59, 74, 508
HinfI	GANTC	2 cut(s)	5, 413
HpaII	CCGG	1 cut(s)	402
HphI	GGTGA	3 cut(s)	223, 307, 590
Hpy166II	GTNNAC	1 cut(s)	41
Hpy188I	TCNGA	1 cut(s)	67
Hpy188III	TCNNGA	4 cut(s)	109, 446, 505, 646
Hpy8I	GTNNAC	1 cut(s)	41
Hpy99I	CGWCG	3 cut(s)	51, 389, 575
HpyAV	CCTTC	3 cut(s)	202, 208, 229
HpyCH4III	ACNGT	1 cut(s)	631
HpyCH4IV	ACGT	2 cut(s)	37, 49
HpyF10VI	GCNNNNNNNGC	3 cut(s)	320, 485, 551
HpyF3I	CTNAG	3 cut(s)	228, 349, 565
HpySE526I	ACGT	2 cut(s)	37, 49
Hsp92II	CATG	3 cut(s)	59, 74, 508
Lsp1109I	GCAGC	7 cut(s)	362, 488, 514, 524, 566, 674, 694
LweI	GCATC	2 cut(s)	463, 532
MabI	ACCWGGT	1 cut(s)	13
MaeII	ACGT	2 cut(s)	37, 49
MaeIII	GTNAC	2 cut(s)	274, 295
MboII	GAAGA	5 cut(s)	86, 191, 324, 593, 742
MlsI	TGGCCA	1 cut(s)	636
MluCI	AATT	4 cut(s)	439, 481, 715, 724
MluNI	TGGCCA	1 cut(s)	636
MmeI	TCCRAC	1 cut(s)	373
MnlI	CCTC	8 cut(s)	142, 270, 351, 402, 463, 569, 661, 664
Mox20I	TGGCCA	1 cut(s)	636
Mph1103I	ATGCAT	1 cut(s)	547
MscI	TGGCCA	1 cut(s)	636
MseI	TTAA	3 cut(s)	165, 288, 742
Msp20I	TGGCCA	1 cut(s)	636
MspI	CCGG	1 cut(s)	402
MspR9I	CCNGG	3 cut(s)	15, 96, 403
Mva1269I	GAATGC	2 cut(s)	85, 328
MvaI	CCWGG	2 cut(s)	15, 96
MvnI	CGCG	1 cut(s)	690
MwoI	GCNNNNNNNGC	3 cut(s)	320, 485, 551
NciI	CCSGG	1 cut(s)	403
NlaIII	CATG	3 cut(s)	59, 74, 508
NlaIV	GGNNCC	1 cut(s)	100
NmuCI	GTSAC	1 cut(s)	295
NsiI	ATGCAT	1 cut(s)	547
NspV	TTCGAA	1 cut(s)	202
PagI	TCATGA	1 cut(s)	504
PaqCI	CACCTGC	1 cut(s)	463
PcsI	WCGNNNNNNNCGW	2 cut(s)	43, 375
PctI	GAATGC	2 cut(s)	85, 328
PfeI	GAWTC	2 cut(s)	5, 413
PkrI	GCNGC	8 cut(s)	374, 377, 478, 514, 529, 556, 664, 709
PpuMI	RGGWCCY	1 cut(s)	307
Psp5II	RGGWCCY	1 cut(s)	307
Psp6I	CCWGG	2 cut(s)	13, 94
PspGI	CCWGG	2 cut(s)	13, 94
PspN4I	GGNNCC	1 cut(s)	100
PspPI	GGNCC	4 cut(s)	98, 155, 307, 685
PspPPI	RGGWCCY	1 cut(s)	307
PstI	CTGCAG	2 cut(s)	615, 712
RsaI	GTAC	2 cut(s)	130, 136
RsaNI	GTAC	2 cut(s)	129, 135
SaqAI	TTAA	3 cut(s)	165, 288, 742
SatI	GCNGC	8 cut(s)	373, 376, 477, 513, 528, 555, 663, 708
Sau96I	GGNCC	4 cut(s)	98, 155, 307, 685
ScrFI	CCNGG	3 cut(s)	15, 96, 403
SexAI	ACCWGGT	1 cut(s)	13
SfaNI	GCATC	2 cut(s)	463, 532
SfcI	CTRYAG	2 cut(s)	611, 708
SfuI	TTCGAA	1 cut(s)	202
SinI	GGWCC	4 cut(s)	98, 155, 307, 685
Sse9I	AATT	4 cut(s)	439, 481, 715, 724
SsiI	CCGC	6 cut(s)	31, 195, 263, 372, 406, 688
SspI	AATATT	1 cut(s)	185
StyD4I	CCNGG	3 cut(s)	13, 94, 401
TaaI	ACNGT	1 cut(s)	631
TaiI	ACGT	2 cut(s)	40, 52
TaqI	TCGA	2 cut(s)	46, 202
TasI	AATT	4 cut(s)	439, 481, 715, 724
TatI	WGTACW	1 cut(s)	134
TauI	GCSGC	1 cut(s)	375
TfiI	GAWTC	2 cut(s)	5, 413
Tru1I	TTAA	3 cut(s)	165, 288, 742
Tru9I	TTAA	3 cut(s)	165, 288, 742
TscAI	CASTG	1 cut(s)	564
TseFI	GTSAC	1 cut(s)	295
TseI	GCWGC	7 cut(s)	375, 476, 512, 527, 554, 662, 707
Tsp45I	GTSAC	1 cut(s)	295
TspDTI	ATGAA	3 cut(s)	87, 221, 248
TspGWI	ACGGA	1 cut(s)	588
TspRI	CASTG	1 cut(s)	564
VpaK11BI	GGWCC	4 cut(s)	98, 155, 307, 685
XapI	RAATTY	2 cut(s)	481, 724
Zsp2I	ATGCAT	1 cut(s)	547

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.