mediator of RNA polymerase II transcription subunit
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Med21 | PF11221 | 1 - 111 | 2.2e-19 | Subunit 21 of Mediator complex |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 133 |
| Acc36I | ACCTGC | 1 cut(s) | 133 |
| AcoI | YGGCCR | 1 cut(s) | 304 |
| AcsI | RAATTY | 1 cut(s) | 151 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 139 |
| AgsI | TTSAA | 4 cut(s) | 58, 194, 351, 367 |
| AluBI | AGCT | 6 cut(s) | 172, 185, 197, 239, 262, 280 |
| AluI | AGCT | 6 cut(s) | 172, 185, 197, 239, 262, 280 |
| Alw26I | GTCTC | 1 cut(s) | 313 |
| AoxI | GGCC | 1 cut(s) | 304 |
| ApeKI | GCWGC | 7 cut(s) | 44, 146, 182, 197, 224, 280, 332 |
| ApoI | RAATTY | 1 cut(s) | 151 |
| AsuHPI | GGTGA | 1 cut(s) | 260 |
| BalI | TGGCCA | 1 cut(s) | 306 |
| BbvI | GCAGC | 7 cut(s) | 31, 158, 184, 194, 236, 267, 344 |
| BccI | CCATC | 1 cut(s) | 236 |
| BcoDI | GTCTC | 1 cut(s) | 313 |
| BfmI | CTRYAG | 2 cut(s) | 135, 281 |
| BfuAI | ACCTGC | 1 cut(s) | 133 |
| BisI | GCNGC | 7 cut(s) | 45, 147, 183, 198, 225, 281, 333 |
| BlsI | GCNGC | 7 cut(s) | 46, 148, 184, 199, 226, 282, 334 |
| BmsI | GCATC | 2 cut(s) | 133, 202 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 169, 201 |
| BpmI | CTGGAG | 1 cut(s) | 299 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 139 |
| Bse1I | ACTGG | 1 cut(s) | 330 |
| Bse3DI | GCAATG | 1 cut(s) | 71 |
| BseGI | GGATG | 1 cut(s) | 148 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 139 |
| BseMI | GCAATG | 1 cut(s) | 71 |
| BseNI | ACTGG | 1 cut(s) | 330 |
| BseXI | GCAGC | 7 cut(s) | 31, 158, 184, 194, 236, 267, 344 |
| BsgI | GTGCAG | 1 cut(s) | 201 |
| BshFI | GGCC | 1 cut(s) | 306 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 139 |
| BsmAI | GTCTC | 1 cut(s) | 313 |
| BsnI | GGCC | 1 cut(s) | 306 |
| BspANI | GGCC | 1 cut(s) | 306 |
| BspHI | TCATGA | 1 cut(s) | 174 |
| BspMAI | CTGCAG | 1 cut(s) | 285 |
| BspMI | ACCTGC | 1 cut(s) | 133 |
| BsrDI | GCAATG | 1 cut(s) | 71 |
| BsrI | ACTGG | 1 cut(s) | 330 |
| Bst4CI | ACNGT | 1 cut(s) | 301 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 155, 221 |
| BstC8I | GCNNGC | 1 cut(s) | 285 |
| BstDEI | CTNAG | 1 cut(s) | 372 |
| BstF5I | GGATG | 1 cut(s) | 148 |
| BstMAI | GTCTC | 1 cut(s) | 313 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 155, 221 |
| BstSFI | CTRYAG | 2 cut(s) | 135, 281 |
| BstV1I | GCAGC | 7 cut(s) | 31, 158, 184, 194, 236, 267, 344 |
| BsuRI | GGCC | 1 cut(s) | 306 |
| BtsCI | GGATG | 1 cut(s) | 148 |
| BveI | ACCTGC | 1 cut(s) | 133 |
| Cac8I | GCNNGC | 1 cut(s) | 285 |
| CciI | TCATGA | 1 cut(s) | 174 |
| CviAII | CATG | 1 cut(s) | 175 |
| CviJI | RGCY | 8 cut(s) | 172, 185, 197, 239, 262, 280, 287, 306 |
| CviKI_1 | RGCY | 8 cut(s) | 172, 185, 197, 239, 262, 280, 287, 306 |
| DdeI | CTNAG | 1 cut(s) | 372 |
| EaeI | YGGCCR | 1 cut(s) | 304 |
| EcoT22I | ATGCAT | 1 cut(s) | 217 |
| FaeI | CATG | 1 cut(s) | 178 |
| FaiI | YATR | 2 cut(s) | 8, 176 |
| FatI | CATG | 1 cut(s) | 174 |
| Fnu4HI | GCNGC | 7 cut(s) | 45, 147, 183, 198, 225, 281, 333 |
| FokI | GGATG | 1 cut(s) | 155 |
| Fsp4HI | GCNGC | 7 cut(s) | 45, 147, 183, 198, 225, 281, 333 |
| GluI | GCNGC | 7 cut(s) | 45, 147, 183, 198, 225, 281, 333 |
| GsuI | CTGGAG | 1 cut(s) | 299 |
| HaeIII | GGCC | 1 cut(s) | 306 |
| Hin1II | CATG | 1 cut(s) | 178 |
| HinfI | GANTC | 1 cut(s) | 83 |
| HphI | GGTGA | 1 cut(s) | 260 |
| Hpy188I | TCNGA | 1 cut(s) | 211 |
| Hpy188III | TCNNGA | 3 cut(s) | 116, 175, 316 |
| HpyAV | CCTTC | 2 cut(s) | 64, 111 |
| HpyCH4III | ACNGT | 1 cut(s) | 301 |
| HpyCH4V | TGCA | 7 cut(s) | 76, 146, 182, 215, 224, 275, 283 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 155, 221 |
| HpyF3I | CTNAG | 1 cut(s) | 372 |
| Hsp92II | CATG | 1 cut(s) | 178 |
| LpnPI | CCDG | 7 cut(s) | 8, 129, 138, 173, 269, 311, 329 |
| Lsp1109I | GCAGC | 7 cut(s) | 31, 158, 184, 194, 236, 267, 344 |
| LweI | GCATC | 2 cut(s) | 133, 202 |
| MboII | GAAGA | 1 cut(s) | 263 |
| MlsI | TGGCCA | 1 cut(s) | 306 |
| MluCI | AATT | 4 cut(s) | 17, 39, 109, 151 |
| MluNI | TGGCCA | 1 cut(s) | 306 |
| MnlI | CCTC | 2 cut(s) | 133, 239 |
| Mox20I | TGGCCA | 1 cut(s) | 306 |
| Mph1103I | ATGCAT | 1 cut(s) | 217 |
| MscI | TGGCCA | 1 cut(s) | 306 |
| Msp20I | TGGCCA | 1 cut(s) | 306 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 155, 221 |
| NlaIII | CATG | 1 cut(s) | 178 |
| NsiI | ATGCAT | 1 cut(s) | 217 |
| PagI | TCATGA | 1 cut(s) | 174 |
| PaqCI | CACCTGC | 1 cut(s) | 133 |
| PfeI | GAWTC | 1 cut(s) | 83 |
| PkrI | GCNGC | 7 cut(s) | 46, 148, 184, 199, 226, 282, 334 |
| PstI | CTGCAG | 1 cut(s) | 285 |
| SatI | GCNGC | 7 cut(s) | 45, 147, 183, 198, 225, 281, 333 |
| SfaNI | GCATC | 2 cut(s) | 133, 202 |
| SfcI | CTRYAG | 2 cut(s) | 135, 281 |
| Sse9I | AATT | 4 cut(s) | 17, 39, 109, 151 |
| TaaI | ACNGT | 1 cut(s) | 301 |
| TasI | AATT | 4 cut(s) | 17, 39, 109, 151 |
| TfiI | GAWTC | 1 cut(s) | 83 |
| TseI | GCWGC | 7 cut(s) | 44, 146, 182, 197, 224, 280, 332 |
| XapI | RAATTY | 1 cut(s) | 151 |
| Zsp2I | ATGCAT | 1 cut(s) | 217 |