Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001458

Physical Location & Seq

Genomic Coordinates Reverse (-)

15244291 .. 15245205

Gene Structure 915 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007276

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGACGCAATCAGCCAATTACAAGAACAGGTGAACAAAATCGCGACCATTGCTTTTACCACCATCGGAACCCTACAGAGGGACGCCCCACCCGTCCGAATCTCCCCCAATTACCCCGAATCCGAGTCAGCACCACCACCCAACCCGAACCCGAACCCGAATCCGACTGACGATGCCACCGATTTCGCGATGCAGCCCAAGCTCATGAGCGCGGATCTAGTCAAAGCAGCCAAGCAGTTTGATGCATTGGTTTCGGCACTTCCGCTGTCGGAGGGAGGCGAGGAGGCTCAGATGAAGAGGATTGCGGAGCTTCAGGCCGAAAACAGCCTTGTAGGCCAACAACTTGAGAAGCAACTTGAAGCTGCAGAGAGAGAACTGGAAGAGGTCAGAGAGTTGTTTGGCCAAGCAGCAGATCACTGTTTGAACTTGAAGAAACCAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med21

Protein Analysis

148

Amino Acids

16.05

Weight (kDa)

4.52

Isoelectric Point (pI)

53.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med21	PF11221	1 - 137	8.4e-32	Subunit 21 of Mediator complex

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04780
fragaria_vesca	FvH4_3g18180 FvH4_3g18181 FvH4_4g21200
malus_domestica	MD10G1319700.v1.1
prunus_persica	Prupe.1G108500_v2.0.a1 Prupe.1G108500_v2.0.a1 Prupe.1G108500_v2.0.a1 Prupe.1G108500_v2.0.a1 Prupe.1G108500_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1
pyrus_communis	pycom10g27060 pycom16g12330
rosa_chinensis	RchiOBHm_Chr4g0426811 RchiOBHm_Chr5g0030661 RchiOBHm_Chr5g0030681
rosa_laevigata	RLG00000007276 RLG00000033237 RLG00000033242 RLG00000033244
rosa_multiflora	Rmu_sc0000953.1_g000011 Rmu_sc0004341.1_g000003 Rmu_sc0004963.1_g000002
rosa_roxburghii	Rroxscaffold_1G00049620 Rroxscaffold_1G00049630 Rroxscaffold_1G00049640 Rroxscaffold_5G00368780
rosa_rugosa	Rorug04G0215000 Rorug05G0120100 Rorug05G0120100
rosa_samantha	Rh4AG270000 Rh4BG276300 Rh4CG291000 Rh4DG273500 Rh5AG211500 Rh5AG211700 Rh5BG210400 Rh5BG210600 Rh5CG234200 Rh5DG215500 Rh5DG215600 Rh5DG215800 Rh5DG215900
rosa_wichuraiana	Rw4G023430 Rw5G019370 Rw5G019410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	44, 188, 212
AciI	CCGC	3 cut(s)	212, 263, 305
AclWI	GGATC	1 cut(s)	222
AcoI	YGGCCR	1 cut(s)	400
AcuI	CTGAAG	1 cut(s)	296
AcyI	GRCGYC	1 cut(s)	84
AfiI	CCNNNNNNNGG	2 cut(s)	78, 79
AgsI	TTSAA	3 cut(s)	359, 424, 430
AluBI	AGCT	3 cut(s)	202, 310, 362
AluI	AGCT	3 cut(s)	202, 310, 362
AlwI	GGATC	1 cut(s)	222
AoxI	GGCC	3 cut(s)	315, 334, 400
ApeKI	GCWGC	4 cut(s)	193, 227, 362, 407
AspLEI	GCGC	1 cut(s)	212
AsuHPI	GGTGA	1 cut(s)	43
BalI	TGGCCA	1 cut(s)	402
BbvI	GCAGC	4 cut(s)	205, 239, 349, 419
BccI	CCATC	1 cut(s)	71
BcgI	CGANNNNNNTGC	2 cut(s)	234, 268
BfaI	CTAG	1 cut(s)	218
BfmI	CTRYAG	2 cut(s)	74, 363
BglI	GCCNNNNNGGC	1 cut(s)	333
BisI	GCNGC	4 cut(s)	194, 228, 363, 408
BlsI	GCNGC	4 cut(s)	195, 229, 364, 409
BmiI	GGNNCC	1 cut(s)	70
BmsI	GCATC	3 cut(s)	163, 180, 232
BpuEI	CTTGAG	1 cut(s)	365
BsaHI	GRCGYC	1 cut(s)	84
Bsc4I	CCNNNNNNNGG	2 cut(s)	78, 79
Bse1I	ACTGG	1 cut(s)	381
Bse3DI	GCAATG	1 cut(s)	48
BseLI	CCNNNNNNNGG	2 cut(s)	78, 79
BseMI	GCAATG	1 cut(s)	48
BseMII	CTCAG	1 cut(s)	302
BseNI	ACTGG	1 cut(s)	381
BseRI	GAGGAG	1 cut(s)	296
BseXI	GCAGC	4 cut(s)	205, 239, 349, 419
Bsh1236I	CGCG	3 cut(s)	44, 188, 212
BshFI	GGCC	3 cut(s)	317, 336, 402
BslFI	GGGAC	1 cut(s)	95
BslI	CCNNNNNNNGG	2 cut(s)	78, 79
BsmFI	GGGAC	1 cut(s)	95
BsnI	GGCC	3 cut(s)	317, 336, 402
Bsp143I	GATC	2 cut(s)	214, 412
Bsp68I	TCGCGA	2 cut(s)	44, 188
BspACI	CCGC	3 cut(s)	212, 263, 305
BspANI	GGCC	3 cut(s)	317, 336, 402
BspCNI	CTCAG	1 cut(s)	301
BspFNI	CGCG	3 cut(s)	44, 188, 212
BspHI	TCATGA	1 cut(s)	204
BspLI	GGNNCC	1 cut(s)	70
BspMAI	CTGCAG	1 cut(s)	367
BspPI	GGATC	1 cut(s)	222
BsrDI	GCAATG	1 cut(s)	48
BsrI	ACTGG	1 cut(s)	381
BssMI	GATC	2 cut(s)	214, 412
BssNI	GRCGYC	1 cut(s)	84
Bst4CI	ACNGT	1 cut(s)	419
Bst6I	CTCTTC	2 cut(s)	290, 375
BstACI	GRCGYC	1 cut(s)	84
BstDEI	CTNAG	1 cut(s)	288
BstFNI	CGCG	3 cut(s)	44, 188, 212
BstHHI	GCGC	1 cut(s)	212
BstKTI	GATC	2 cut(s)	217, 415
BstMBI	GATC	2 cut(s)	214, 412
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 199, 333
BstSFI	CTRYAG	2 cut(s)	74, 363
BstUI	CGCG	3 cut(s)	44, 188, 212
BstV1I	GCAGC	4 cut(s)	205, 239, 349, 419
BstX2I	RGATCY	1 cut(s)	214
BstYI	RGATCY	1 cut(s)	214
BsuRI	GGCC	3 cut(s)	317, 336, 402
BtgZI	GCGATG	1 cut(s)	203
BtsIMutI	CAGTG	1 cut(s)	415
BtuMI	TCGCGA	2 cut(s)	44, 188
CciI	TCATGA	1 cut(s)	204
CfoI	GCGC	1 cut(s)	212
CseI	GACGC	2 cut(s)	14, 92
CviAII	CATG	1 cut(s)	205
DdeI	CTNAG	1 cut(s)	288
DpnI	GATC	2 cut(s)	216, 414
DpnII	GATC	2 cut(s)	214, 412
EaeI	YGGCCR	1 cut(s)	400
Eam1104I	CTCTTC	2 cut(s)	290, 375
EarI	CTCTTC	2 cut(s)	290, 375
Eco57I	CTGAAG	1 cut(s)	296
EcoT22I	ATGCAT	1 cut(s)	247
FaeI	CATG	1 cut(s)	208
FaiI	YATR	1 cut(s)	206
FaqI	GGGAC	1 cut(s)	95
FatI	CATG	1 cut(s)	204
Fnu4HI	GCNGC	4 cut(s)	194, 228, 363, 408
Fsp4HI	GCNGC	4 cut(s)	194, 228, 363, 408
FspBI	CTAG	1 cut(s)	218
GlaI	GCGC	1 cut(s)	211
GluI	GCNGC	4 cut(s)	194, 228, 363, 408
HaeIII	GGCC	3 cut(s)	317, 336, 402
HgaI	GACGC	2 cut(s)	14, 92
HhaI	GCGC	1 cut(s)	212
Hin1I	GRCGYC	1 cut(s)	84
Hin1II	CATG	1 cut(s)	208
Hin6I	GCGC	1 cut(s)	210
HinP1I	GCGC	1 cut(s)	210
HinfI	GANTC	4 cut(s)	99, 119, 125, 160
HphI	GGTGA	1 cut(s)	43
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188I	TCNGA	7 cut(s)	68, 98, 124, 165, 271, 291, 389
Hpy188III	TCNNGA	3 cut(s)	43, 187, 205
Hpy8I	GTNNAC	1 cut(s)	34
HpyCH4III	ACNGT	1 cut(s)	419
HpyCH4V	TGCA	3 cut(s)	193, 245, 365
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 199, 333
HpyF3I	CTNAG	1 cut(s)	288
Hsp92I	GRCGYC	1 cut(s)	84
Hsp92II	CATG	1 cut(s)	208
HspAI	GCGC	1 cut(s)	210
Kzo9I	GATC	2 cut(s)	214, 412
LmnI	GCTCC	1 cut(s)	307
LpnPI	CCDG	3 cut(s)	14, 299, 362
Lsp1109I	GCAGC	4 cut(s)	205, 239, 349, 419
LweI	GCATC	3 cut(s)	163, 180, 232
MaeI	CTAG	1 cut(s)	218
MalI	GATC	2 cut(s)	216, 414
MboI	GATC	2 cut(s)	214, 412
MboII	GAAGA	3 cut(s)	307, 392, 442
MflI	RGATCY	1 cut(s)	214
MlsI	TGGCCA	1 cut(s)	402
MluCI	AATT	2 cut(s)	17, 109
MluNI	TGGCCA	1 cut(s)	402
MlyI	GAGTC	1 cut(s)	134
MmeI	TCCRAC	2 cut(s)	188, 249
MnlI	CCTC	7 cut(s)	72, 265, 269, 274, 277, 291, 376
Mox20I	TGGCCA	1 cut(s)	402
Mph1103I	ATGCAT	1 cut(s)	247
MscI	TGGCCA	1 cut(s)	402
Msp20I	TGGCCA	1 cut(s)	402
MspA1I	CMGCKG	1 cut(s)	265
MvnI	CGCG	3 cut(s)	44, 188, 212
MwoI	GCNNNNNNNGC	3 cut(s)	50, 199, 333
NdeII	GATC	2 cut(s)	214, 412
NlaIII	CATG	1 cut(s)	208
NlaIV	GGNNCC	1 cut(s)	70
NruI	TCGCGA	2 cut(s)	44, 188
NsiI	ATGCAT	1 cut(s)	247
PagI	TCATGA	1 cut(s)	204
PcsI	WCGNNNNNNNCGW	2 cut(s)	90, 177
PfeI	GAWTC	3 cut(s)	99, 119, 160
PkrI	GCNGC	4 cut(s)	195, 229, 364, 409
PleI	GAGTC	1 cut(s)	133
PpsI	GAGTC	1 cut(s)	133
PspN4I	GGNNCC	1 cut(s)	70
PstI	CTGCAG	1 cut(s)	367
PsuI	RGATCY	1 cut(s)	214
RruI	TCGCGA	2 cut(s)	44, 188
SatI	GCNGC	4 cut(s)	194, 228, 363, 408
Sau3AI	GATC	2 cut(s)	214, 412
SchI	GAGTC	1 cut(s)	134
SetI	ASST	5 cut(s)	33, 204, 312, 364, 387
SfaNI	GCATC	3 cut(s)	163, 180, 232
SfcI	CTRYAG	2 cut(s)	74, 363
SmlI	CTYRAG	1 cut(s)	344
SmoI	CTYRAG	1 cut(s)	344
Sse9I	AATT	2 cut(s)	17, 109
SsiI	CCGC	3 cut(s)	212, 263, 305
SspMI	CTAG	1 cut(s)	218
TaaI	ACNGT	1 cut(s)	419
TasI	AATT	2 cut(s)	17, 109
TfiI	GAWTC	3 cut(s)	99, 119, 160
TscAI	CASTG	1 cut(s)	422
TseI	GCWGC	4 cut(s)	193, 227, 362, 407
TspDTI	ATGAA	1 cut(s)	308
TspRI	CASTG	1 cut(s)	422
XspI	CTAG	1 cut(s)	218
Zsp2I	ATGCAT	1 cut(s)	247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.