Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0001458

Physical Location & Seq

Genomic Coordinates Forward (+)

58661773 .. 58662663

Gene Structure 891 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG270000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGACGCAATCAGCCAATTACAAGAACAGGTGAACAAAATCGCGACCATTGCTTTCACCACCATCGGAACCCTACAGAGGGACGCCCCACCCGTCCGAATCTCCCCCAATTACCCCGAATCCGAGTCAGCACCACCACCCAACCCGAACCCGAACCCGAATCCGACTGACGATGCCACCGATTTCGCGATGCAGCCCAAGCTGATGAGCGCGGATCTAGTCAAAGCAGCCAAGCAGTTTGATGCATTGGTTTCGGCACTTCCGCTGTCGGAGGGAGGCGAGGAAGCTCAGATGAAGAGGATTGCGGAGCTTCAGGCCGAAAACAGCCTTGTAGGCCAACAACTTGAGAAGCAACTTGAAGCTGCAGGTCAGTGTTCGAGCCTAATATGCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med21

Protein Analysis

131

Amino Acids

14.03

Weight (kDa)

4.46

Isoelectric Point (pI)

55.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med21	PF11221	1 - 124	3.7e-28	Subunit 21 of Mediator complex

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04780
fragaria_vesca	FvH4_3g18180 FvH4_3g18181 FvH4_4g21200
malus_domestica	MD10G1319700.v1.1
prunus_persica	Prupe.1G108500_v2.0.a1 Prupe.1G108500_v2.0.a1 Prupe.1G108500_v2.0.a1 Prupe.1G108500_v2.0.a1 Prupe.1G108500_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1
pyrus_communis	pycom10g27060 pycom16g12330
rosa_chinensis	RchiOBHm_Chr4g0426811 RchiOBHm_Chr5g0030661 RchiOBHm_Chr5g0030681
rosa_laevigata	RLG00000007276 RLG00000033237 RLG00000033242 RLG00000033244
rosa_multiflora	Rmu_sc0000953.1_g000011 Rmu_sc0004341.1_g000003 Rmu_sc0004963.1_g000002
rosa_roxburghii	Rroxscaffold_1G00049620 Rroxscaffold_1G00049630 Rroxscaffold_1G00049640 Rroxscaffold_5G00368780
rosa_rugosa	Rorug04G0215000 Rorug05G0120100 Rorug05G0120100
rosa_samantha	Rh4AG270000 Rh4BG276300 Rh4CG291000 Rh4DG273500 Rh5AG211500 Rh5AG211700 Rh5BG210400 Rh5BG210600 Rh5CG234200 Rh5DG215500 Rh5DG215600 Rh5DG215800 Rh5DG215900
rosa_wichuraiana	Rw4G023430 Rw5G019370 Rw5G019410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	356
AccII	CGCG	3 cut(s)	44, 188, 212
AciI	CCGC	3 cut(s)	212, 263, 305
AclWI	GGATC	1 cut(s)	222
AcuI	CTGAAG	1 cut(s)	296
AcyI	GRCGYC	1 cut(s)	84
AfiI	CCNNNNNNNGG	2 cut(s)	78, 79
AgsI	TTSAA	1 cut(s)	359
AluBI	AGCT	4 cut(s)	202, 287, 310, 362
AluI	AGCT	4 cut(s)	202, 287, 310, 362
AlwI	GGATC	1 cut(s)	222
AoxI	GGCC	2 cut(s)	315, 334
ApeKI	GCWGC	3 cut(s)	193, 227, 362
AspLEI	GCGC	1 cut(s)	212
AsuHPI	GGTGA	2 cut(s)	43, 49
BbvI	GCAGC	3 cut(s)	205, 239, 349
BccI	CCATC	1 cut(s)	71
BcgI	CGANNNNNNTGC	2 cut(s)	234, 268
BfaI	CTAG	1 cut(s)	218
BfmI	CTRYAG	2 cut(s)	74, 363
BfuAI	ACCTGC	1 cut(s)	356
BglI	GCCNNNNNGGC	1 cut(s)	333
BisI	GCNGC	3 cut(s)	194, 228, 363
BlsI	GCNGC	3 cut(s)	195, 229, 364
BmiI	GGNNCC	1 cut(s)	70
BmsI	GCATC	3 cut(s)	163, 180, 232
BpuEI	CTTGAG	1 cut(s)	365
BsaHI	GRCGYC	1 cut(s)	84
Bsc4I	CCNNNNNNNGG	2 cut(s)	78, 79
Bse3DI	GCAATG	1 cut(s)	48
BseLI	CCNNNNNNNGG	2 cut(s)	78, 79
BseMI	GCAATG	1 cut(s)	48
BseMII	CTCAG	1 cut(s)	302
BseXI	GCAGC	3 cut(s)	205, 239, 349
Bsh1236I	CGCG	3 cut(s)	44, 188, 212
BshFI	GGCC	2 cut(s)	317, 336
BslFI	GGGAC	1 cut(s)	95
BslI	CCNNNNNNNGG	2 cut(s)	78, 79
BsmFI	GGGAC	1 cut(s)	95
BsnI	GGCC	2 cut(s)	317, 336
Bsp143I	GATC	1 cut(s)	214
Bsp68I	TCGCGA	2 cut(s)	44, 188
BspACI	CCGC	3 cut(s)	212, 263, 305
BspANI	GGCC	2 cut(s)	317, 336
BspCNI	CTCAG	1 cut(s)	301
BspFNI	CGCG	3 cut(s)	44, 188, 212
BspLI	GGNNCC	1 cut(s)	70
BspMAI	CTGCAG	1 cut(s)	367
BspMI	ACCTGC	1 cut(s)	356
BspPI	GGATC	1 cut(s)	222
BsrDI	GCAATG	1 cut(s)	48
BssMI	GATC	1 cut(s)	214
BssNI	GRCGYC	1 cut(s)	84
Bst6I	CTCTTC	1 cut(s)	290
BstACI	GRCGYC	1 cut(s)	84
BstDEI	CTNAG	1 cut(s)	288
BstFNI	CGCG	3 cut(s)	44, 188, 212
BstHHI	GCGC	1 cut(s)	212
BstKTI	GATC	1 cut(s)	217
BstMBI	GATC	1 cut(s)	214
BstMWI	GCNNNNNNNGC	4 cut(s)	50, 199, 333, 387
BstSFI	CTRYAG	2 cut(s)	74, 363
BstUI	CGCG	3 cut(s)	44, 188, 212
BstV1I	GCAGC	3 cut(s)	205, 239, 349
BstX2I	RGATCY	1 cut(s)	214
BstYI	RGATCY	1 cut(s)	214
BsuRI	GGCC	2 cut(s)	317, 336
BtgZI	GCGATG	1 cut(s)	203
BtsIMutI	CAGTG	1 cut(s)	377
BtuMI	TCGCGA	2 cut(s)	44, 188
BveI	ACCTGC	1 cut(s)	356
CfoI	GCGC	1 cut(s)	212
CseI	GACGC	2 cut(s)	14, 92
DdeI	CTNAG	1 cut(s)	288
DpnI	GATC	1 cut(s)	216
DpnII	GATC	1 cut(s)	214
Eam1104I	CTCTTC	1 cut(s)	290
EarI	CTCTTC	1 cut(s)	290
Eco57I	CTGAAG	1 cut(s)	296
EcoT22I	ATGCAT	1 cut(s)	247
FaiI	YATR	1 cut(s)	388
FaqI	GGGAC	1 cut(s)	95
Fnu4HI	GCNGC	3 cut(s)	194, 228, 363
Fsp4HI	GCNGC	3 cut(s)	194, 228, 363
FspBI	CTAG	1 cut(s)	218
GlaI	GCGC	1 cut(s)	211
GluI	GCNGC	3 cut(s)	194, 228, 363
HaeIII	GGCC	2 cut(s)	317, 336
HgaI	GACGC	2 cut(s)	14, 92
HhaI	GCGC	1 cut(s)	212
Hin1I	GRCGYC	1 cut(s)	84
Hin6I	GCGC	1 cut(s)	210
HinP1I	GCGC	1 cut(s)	210
HinfI	GANTC	4 cut(s)	99, 119, 125, 160
HphI	GGTGA	2 cut(s)	43, 49
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188I	TCNGA	6 cut(s)	68, 98, 124, 165, 271, 291
Hpy188III	TCNNGA	2 cut(s)	43, 187
Hpy8I	GTNNAC	1 cut(s)	34
HpyCH4V	TGCA	4 cut(s)	193, 245, 365, 390
HpyF10VI	GCNNNNNNNGC	4 cut(s)	50, 199, 333, 387
HpyF3I	CTNAG	1 cut(s)	288
Hsp92I	GRCGYC	1 cut(s)	84
HspAI	GCGC	1 cut(s)	210
Kzo9I	GATC	1 cut(s)	214
LmnI	GCTCC	1 cut(s)	307
LpnPI	CCDG	3 cut(s)	14, 299, 351
Lsp1109I	GCAGC	3 cut(s)	205, 239, 349
LweI	GCATC	3 cut(s)	163, 180, 232
MaeI	CTAG	1 cut(s)	218
MalI	GATC	1 cut(s)	216
MboI	GATC	1 cut(s)	214
MboII	GAAGA	1 cut(s)	307
MflI	RGATCY	1 cut(s)	214
MluCI	AATT	2 cut(s)	17, 109
MlyI	GAGTC	1 cut(s)	134
MmeI	TCCRAC	2 cut(s)	188, 249
MnlI	CCTC	5 cut(s)	72, 265, 269, 274, 291
Mph1103I	ATGCAT	1 cut(s)	247
MspA1I	CMGCKG	1 cut(s)	265
MvnI	CGCG	3 cut(s)	44, 188, 212
MwoI	GCNNNNNNNGC	4 cut(s)	50, 199, 333, 387
NdeII	GATC	1 cut(s)	214
NlaIV	GGNNCC	1 cut(s)	70
NruI	TCGCGA	2 cut(s)	44, 188
NsiI	ATGCAT	1 cut(s)	247
PcsI	WCGNNNNNNNCGW	2 cut(s)	90, 177
PfeI	GAWTC	3 cut(s)	99, 119, 160
PkrI	GCNGC	3 cut(s)	195, 229, 364
PleI	GAGTC	1 cut(s)	133
PpsI	GAGTC	1 cut(s)	133
PspN4I	GGNNCC	1 cut(s)	70
PstI	CTGCAG	1 cut(s)	367
PsuI	RGATCY	1 cut(s)	214
RruI	TCGCGA	2 cut(s)	44, 188
SatI	GCNGC	3 cut(s)	194, 228, 363
Sau3AI	GATC	1 cut(s)	214
SchI	GAGTC	1 cut(s)	134
SetI	ASST	6 cut(s)	33, 204, 289, 312, 364, 370
SfaNI	GCATC	3 cut(s)	163, 180, 232
SfcI	CTRYAG	2 cut(s)	74, 363
SmlI	CTYRAG	1 cut(s)	344
SmoI	CTYRAG	1 cut(s)	344
Sse9I	AATT	2 cut(s)	17, 109
SsiI	CCGC	3 cut(s)	212, 263, 305
SspMI	CTAG	1 cut(s)	218
TaqI	TCGA	1 cut(s)	377
TasI	AATT	2 cut(s)	17, 109
TfiI	GAWTC	3 cut(s)	99, 119, 160
TscAI	CASTG	1 cut(s)	377
TseI	GCWGC	3 cut(s)	193, 227, 362
TspDTI	ATGAA	1 cut(s)	308
TspRI	CASTG	1 cut(s)	377
XspI	CTAG	1 cut(s)	218
Zsp2I	ATGCAT	1 cut(s)	247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.