Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0001458

Physical Location & Seq

Genomic Coordinates Reverse (-)

1073101 .. 1075401

Gene Structure 2301 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G022700.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGACATAATCTCCCAACTACAGGAACAAGTCAACACAATTGCTTCTCTTGCCTTCAATACCTTTGGAACACTACAAAGGGATTCGCCACCAGTTAGACTTTCACCAAATTACCCAGAACCACCTGCGAATCCGACGGAGGATGCAGAGAATTTTGCTGAACATGCCAAGCTCGTGAGTGCCGCTCTGGTTAAGGCTGCTAAGCAGTTTGATGCATTAGTTGCAGCACTTCCTTTAGCTGAGGGAGGGGAAGAAGCACAGCTGAAAAGGATTGCAGAACTGCAGGCTGAAAATGACGCTGTTGGCCAAGAACTTCAGAGGCAACTGGAAGCTGCAGAGAAAGAATTAAAGGAGGTCCGTGAATTGTTCAGCCAAGCAGCAGATAATTGCTTGAACTTGAAGAAACCCGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009814 GO:0009817 GO:0009889 GO:0010468 GO:0010556 GO:0016592 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0043076 GO:0043078 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0098542 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med21

Protein Analysis

138

Amino Acids

14.95

Weight (kDa)

4.57

Isoelectric Point (pI)

49.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04780
fragaria_vesca	FvH4_3g18180 FvH4_3g18181 FvH4_4g21200
malus_domestica	MD10G1319700.v1.1
prunus_persica	Prupe.1G108500_v2.0.a1 Prupe.1G108500_v2.0.a1 Prupe.1G108500_v2.0.a1 Prupe.1G108500_v2.0.a1 Prupe.1G108500_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1
pyrus_communis	pycom10g27060 pycom16g12330
rosa_chinensis	RchiOBHm_Chr4g0426811 RchiOBHm_Chr5g0030661 RchiOBHm_Chr5g0030681
rosa_laevigata	RLG00000007276 RLG00000033237 RLG00000033242 RLG00000033244
rosa_multiflora	Rmu_sc0000953.1_g000011 Rmu_sc0004341.1_g000003 Rmu_sc0004963.1_g000002
rosa_roxburghii	Rroxscaffold_1G00049620 Rroxscaffold_1G00049630 Rroxscaffold_1G00049640 Rroxscaffold_5G00368780
rosa_rugosa	Rorug04G0215000 Rorug05G0120100 Rorug05G0120100
rosa_samantha	Rh4AG270000 Rh4BG276300 Rh4CG291000 Rh4DG273500 Rh5AG211500 Rh5AG211700 Rh5BG210400 Rh5BG210600 Rh5CG234200 Rh5DG215500 Rh5DG215600 Rh5DG215800 Rh5DG215900
rosa_wichuraiana	Rw4G023430 Rw5G019370 Rw5G019410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	133
Acc36I	ACCTGC	1 cut(s)	133
AccBSI	CCGCTC	1 cut(s)	185
AciI	CCGC	1 cut(s)	183
AcoI	YGGCCR	1 cut(s)	304
AcsI	RAATTY	1 cut(s)	151
AcuI	CTGAAG	1 cut(s)	299
AfiI	CCNNNNNNNGG	1 cut(s)	22
AgsI	TTSAA	3 cut(s)	58, 394, 400
AluBI	AGCT	4 cut(s)	172, 239, 262, 332
AluI	AGCT	4 cut(s)	172, 239, 262, 332
AoxI	GGCC	1 cut(s)	304
ApeKI	GCWGC	4 cut(s)	197, 224, 332, 377
ApoI	RAATTY	1 cut(s)	151
AspS9I	GGNCC	1 cut(s)	355
AsuHPI	GGTGA	1 cut(s)	96
AvaII	GGWCC	1 cut(s)	355
BalI	TGGCCA	1 cut(s)	306
BauI	CACGAG	1 cut(s)	173
BbvCI	CCTCAGC	1 cut(s)	240
BbvI	GCAGC	4 cut(s)	184, 236, 319, 389
BfmI	CTRYAG	3 cut(s)	20, 281, 333
BfuAI	ACCTGC	1 cut(s)	133
BisI	GCNGC	5 cut(s)	183, 198, 225, 333, 378
BlpI	GCTNAGC	1 cut(s)	201
BlsI	GCNGC	5 cut(s)	184, 199, 226, 334, 379
Bme18I	GGWCC	1 cut(s)	355
BmgT120I	GGNCC	1 cut(s)	355
BmsI	GCATC	2 cut(s)	133, 202
BplI	GAGNNNNNCTC	2 cut(s)	169, 201
Bpu10I	CCTNAGC	1 cut(s)	240
Bpu1102I	GCTNAGC	1 cut(s)	201
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	1 cut(s)	22
Bse1I	ACTGG	2 cut(s)	92, 330
BseGI	GGATG	1 cut(s)	148
BseLI	CCNNNNNNNGG	1 cut(s)	22
BseMII	CTCAG	1 cut(s)	231
BseNI	ACTGG	2 cut(s)	92, 330
BseXI	GCAGC	4 cut(s)	184, 236, 319, 389
BshFI	GGCC	1 cut(s)	306
BslI	CCNNNNNNNGG	1 cut(s)	22
BsnI	GGCC	1 cut(s)	306
Bsp1720I	GCTNAGC	1 cut(s)	201
BspACI	CCGC	1 cut(s)	183
BspANI	GGCC	1 cut(s)	306
BspCNI	CTCAG	1 cut(s)	232
BspMAI	CTGCAG	2 cut(s)	285, 337
BspMI	ACCTGC	1 cut(s)	133
BsrBI	CCGCTC	1 cut(s)	185
BsrI	ACTGG	2 cut(s)	92, 330
BssSI	CACGAG	1 cut(s)	173
Bst2BI	CACGAG	1 cut(s)	173
BstAPI	GCANNNNNTGC	1 cut(s)	221
BstC8I	GCNNGC	1 cut(s)	285
BstDEI	CTNAG	2 cut(s)	201, 240
BstF5I	GGATG	1 cut(s)	148
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 164, 221
BstNSI	RCATGY	1 cut(s)	167
BstSFI	CTRYAG	3 cut(s)	20, 281, 333
BstV1I	GCAGC	4 cut(s)	184, 236, 319, 389
BsuRI	GGCC	1 cut(s)	306
BtsCI	GGATG	1 cut(s)	148
BveI	ACCTGC	1 cut(s)	133
Cac8I	GCNNGC	1 cut(s)	285
Cfr13I	GGNCC	1 cut(s)	355
CseI	GACGC	1 cut(s)	305
CviAII	CATG	1 cut(s)	164
CviJI	RGCY	8 cut(s)	172, 197, 239, 262, 287, 306, 332, 372
CviKI_1	RGCY	8 cut(s)	172, 197, 239, 262, 287, 306, 332, 372
DdeI	CTNAG	2 cut(s)	201, 240
EaeI	YGGCCR	1 cut(s)	304
Eco47I	GGWCC	1 cut(s)	355
Eco57I	CTGAAG	1 cut(s)	299
EcoT22I	ATGCAT	1 cut(s)	217
FaeI	CATG	1 cut(s)	167
FaiI	YATR	2 cut(s)	8, 165
FatI	CATG	1 cut(s)	163
Fnu4HI	GCNGC	5 cut(s)	183, 198, 225, 333, 378
FokI	GGATG	1 cut(s)	155
Fsp4HI	GCNGC	5 cut(s)	183, 198, 225, 333, 378
GluI	GCNGC	5 cut(s)	183, 198, 225, 333, 378
HaeIII	GGCC	1 cut(s)	306
HgaI	GACGC	1 cut(s)	305
Hin1II	CATG	1 cut(s)	167
HincII	GTYRAC	1 cut(s)	34
HindII	GTYRAC	1 cut(s)	34
HinfI	GANTC	2 cut(s)	83, 130
HphI	GGTGA	1 cut(s)	96
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188I	TCNGA	2 cut(s)	135, 318
Hpy188III	TCNNGA	1 cut(s)	175
Hpy8I	GTNNAC	1 cut(s)	34
Hpy99I	CGWCG	1 cut(s)	139
HpyAV	CCTTC	1 cut(s)	64
HpyCH4V	TGCA	6 cut(s)	146, 215, 224, 275, 283, 335
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 164, 221
HpyF3I	CTNAG	2 cut(s)	201, 240
Hsp92II	CATG	1 cut(s)	167
LpnPI	CCDG	7 cut(s)	8, 105, 129, 138, 173, 269, 311
Lsp1109I	GCAGC	4 cut(s)	184, 236, 319, 389
LweI	GCATC	2 cut(s)	133, 202
MbiI	CCGCTC	1 cut(s)	185
MboII	GAAGA	2 cut(s)	263, 412
MfeI	CAATTG	1 cut(s)	39
MlsI	TGGCCA	1 cut(s)	306
MluCI	AATT	6 cut(s)	39, 109, 151, 344, 362, 385
MluNI	TGGCCA	1 cut(s)	306
MmeI	TCCRAC	1 cut(s)	158
MnlI	CCTC	5 cut(s)	133, 235, 239, 312, 346
Mox20I	TGGCCA	1 cut(s)	306
Mph1103I	ATGCAT	1 cut(s)	217
MscI	TGGCCA	1 cut(s)	306
MseI	TTAA	3 cut(s)	192, 347, 412
Msp20I	TGGCCA	1 cut(s)	306
MspA1I	CMGCKG	1 cut(s)	262
MunI	CAATTG	1 cut(s)	39
MwoI	GCNNNNNNNGC	3 cut(s)	50, 164, 221
NlaIII	CATG	1 cut(s)	167
NsiI	ATGCAT	1 cut(s)	217
NspI	RCATGY	1 cut(s)	167
PaqCI	CACCTGC	1 cut(s)	133
PfeI	GAWTC	2 cut(s)	83, 130
PkrI	GCNGC	5 cut(s)	184, 199, 226, 334, 379
PspPI	GGNCC	1 cut(s)	355
PstI	CTGCAG	2 cut(s)	285, 337
PvuII	CAGCTG	1 cut(s)	262
SaqAI	TTAA	3 cut(s)	192, 347, 412
SatI	GCNGC	5 cut(s)	183, 198, 225, 333, 378
Sau96I	GGNCC	1 cut(s)	355
SetI	ASST	7 cut(s)	65, 127, 174, 241, 264, 334, 357
SfaNI	GCATC	2 cut(s)	133, 202
SfcI	CTRYAG	3 cut(s)	20, 281, 333
SinI	GGWCC	1 cut(s)	355
Sse9I	AATT	6 cut(s)	39, 109, 151, 344, 362, 385
SsiI	CCGC	1 cut(s)	183
TasI	AATT	6 cut(s)	39, 109, 151, 344, 362, 385
TauI	GCSGC	1 cut(s)	185
TfiI	GAWTC	2 cut(s)	83, 130
Tru1I	TTAA	3 cut(s)	192, 347, 412
Tru9I	TTAA	3 cut(s)	192, 347, 412
TseI	GCWGC	4 cut(s)	197, 224, 332, 377
TspGWI	ACGGA	2 cut(s)	152, 347
VpaK11BI	GGWCC	1 cut(s)	355
XapI	RAATTY	1 cut(s)	151
XceI	RCATGY	1 cut(s)	167
Zsp2I	ATGCAT	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.