Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001458

Physical Location & Seq

Genomic Coordinates Forward (+)

45033409 .. 45034318

Gene Structure 910 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG276300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGGACGCAATCAGCCAATTACAAGAACAGCCCAAGCTGATGAGCGCGGATCTAGTCAAAGCAGCCAAGCAGTTTGATGCATTGGTTTCGGCACTTCCGCTGTCGGAGGGAGGCGAGGAAGCTCAGATGAAGAGGATTGCGGAGCTTCAGGCCGAAAACAGCCTTGTAGGCCAACAACTTGAGAAGCAACTTGAAGCTGCAGAGAGAGAACTGGAAGAGGTCAGAGAGTTGTTTGGCCAAGCAGCAGATCACTGTTTGAACTTGAAGAAACCAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med21

Protein Analysis

92

Amino Acids

10.18

Weight (kDa)

4.62

Isoelectric Point (pI)

51.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med21	PF11221	5 - 82	3e-16	Subunit 21 of Mediator complex

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04780
fragaria_vesca	FvH4_3g18180 FvH4_3g18181 FvH4_4g21200
malus_domestica	MD10G1319700.v1.1
prunus_persica	Prupe.1G108500_v2.0.a1 Prupe.1G108500_v2.0.a1 Prupe.1G108500_v2.0.a1 Prupe.1G108500_v2.0.a1 Prupe.1G108500_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1
pyrus_communis	pycom10g27060 pycom16g12330
rosa_chinensis	RchiOBHm_Chr4g0426811 RchiOBHm_Chr5g0030661 RchiOBHm_Chr5g0030681
rosa_laevigata	RLG00000007276 RLG00000033237 RLG00000033242 RLG00000033244
rosa_multiflora	Rmu_sc0000953.1_g000011 Rmu_sc0004341.1_g000003 Rmu_sc0004963.1_g000002
rosa_roxburghii	Rroxscaffold_1G00049620 Rroxscaffold_1G00049630 Rroxscaffold_1G00049640 Rroxscaffold_5G00368780
rosa_rugosa	Rorug04G0215000 Rorug05G0120100 Rorug05G0120100
rosa_samantha	Rh4AG270000 Rh4BG276300 Rh4CG291000 Rh4DG273500 Rh5AG211500 Rh5AG211700 Rh5BG210400 Rh5BG210600 Rh5CG234200 Rh5DG215500 Rh5DG215600 Rh5DG215800 Rh5DG215900
rosa_wichuraiana	Rw4G023430 Rw5G019370 Rw5G019410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	47
AciI	CCGC	3 cut(s)	47, 98, 140
AclWI	GGATC	1 cut(s)	57
AcoI	YGGCCR	1 cut(s)	235
AcuI	CTGAAG	1 cut(s)	131
AgsI	TTSAA	3 cut(s)	194, 259, 265
AluBI	AGCT	4 cut(s)	37, 122, 145, 197
AluI	AGCT	4 cut(s)	37, 122, 145, 197
AlwI	GGATC	1 cut(s)	57
AoxI	GGCC	3 cut(s)	150, 169, 235
ApeKI	GCWGC	3 cut(s)	62, 197, 242
AspLEI	GCGC	1 cut(s)	47
BalI	TGGCCA	1 cut(s)	237
BbvI	GCAGC	3 cut(s)	74, 184, 254
BcgI	CGANNNNNNTGC	2 cut(s)	69, 103
BfaI	CTAG	1 cut(s)	53
BfmI	CTRYAG	1 cut(s)	198
BglI	GCCNNNNNGGC	1 cut(s)	168
BisI	GCNGC	3 cut(s)	63, 198, 243
BlsI	GCNGC	3 cut(s)	64, 199, 244
BmsI	GCATC	1 cut(s)	67
BpuEI	CTTGAG	1 cut(s)	200
Bse1I	ACTGG	1 cut(s)	216
BseMII	CTCAG	1 cut(s)	137
BseNI	ACTGG	1 cut(s)	216
BseXI	GCAGC	3 cut(s)	74, 184, 254
Bsh1236I	CGCG	1 cut(s)	47
BshFI	GGCC	3 cut(s)	152, 171, 237
BsnI	GGCC	3 cut(s)	152, 171, 237
Bsp143I	GATC	2 cut(s)	49, 247
BspACI	CCGC	3 cut(s)	47, 98, 140
BspANI	GGCC	3 cut(s)	152, 171, 237
BspCNI	CTCAG	1 cut(s)	136
BspFNI	CGCG	1 cut(s)	47
BspMAI	CTGCAG	1 cut(s)	202
BspPI	GGATC	1 cut(s)	57
BsrI	ACTGG	1 cut(s)	216
BssMI	GATC	2 cut(s)	49, 247
Bst4CI	ACNGT	1 cut(s)	254
Bst6I	CTCTTC	2 cut(s)	125, 210
BstDEI	CTNAG	1 cut(s)	123
BstFNI	CGCG	1 cut(s)	47
BstHHI	GCGC	1 cut(s)	47
BstKTI	GATC	2 cut(s)	52, 250
BstMBI	GATC	2 cut(s)	49, 247
BstMWI	GCNNNNNNNGC	1 cut(s)	168
BstSFI	CTRYAG	1 cut(s)	198
BstUI	CGCG	1 cut(s)	47
BstV1I	GCAGC	3 cut(s)	74, 184, 254
BstX2I	RGATCY	1 cut(s)	49
BstYI	RGATCY	1 cut(s)	49
BsuRI	GGCC	3 cut(s)	152, 171, 237
BtsIMutI	CAGTG	1 cut(s)	250
CfoI	GCGC	1 cut(s)	47
CseI	GACGC	1 cut(s)	14
DdeI	CTNAG	1 cut(s)	123
DpnI	GATC	2 cut(s)	51, 249
DpnII	GATC	2 cut(s)	49, 247
EaeI	YGGCCR	1 cut(s)	235
Eam1104I	CTCTTC	2 cut(s)	125, 210
EarI	CTCTTC	2 cut(s)	125, 210
Eco57I	CTGAAG	1 cut(s)	131
EcoT22I	ATGCAT	1 cut(s)	82
Fnu4HI	GCNGC	3 cut(s)	63, 198, 243
Fsp4HI	GCNGC	3 cut(s)	63, 198, 243
FspBI	CTAG	1 cut(s)	53
GlaI	GCGC	1 cut(s)	46
GluI	GCNGC	3 cut(s)	63, 198, 243
HaeIII	GGCC	3 cut(s)	152, 171, 237
HgaI	GACGC	1 cut(s)	14
HhaI	GCGC	1 cut(s)	47
Hin6I	GCGC	1 cut(s)	45
HinP1I	GCGC	1 cut(s)	45
Hpy188I	TCNGA	3 cut(s)	106, 126, 224
HpyCH4III	ACNGT	1 cut(s)	254
HpyCH4V	TGCA	2 cut(s)	80, 200
HpyF10VI	GCNNNNNNNGC	1 cut(s)	168
HpyF3I	CTNAG	1 cut(s)	123
HspAI	GCGC	1 cut(s)	45
Kzo9I	GATC	2 cut(s)	49, 247
LmnI	GCTCC	1 cut(s)	142
LpnPI	CCDG	2 cut(s)	134, 197
Lsp1109I	GCAGC	3 cut(s)	74, 184, 254
LweI	GCATC	1 cut(s)	67
MaeI	CTAG	1 cut(s)	53
MalI	GATC	2 cut(s)	51, 249
MboI	GATC	2 cut(s)	49, 247
MboII	GAAGA	3 cut(s)	142, 227, 277
MflI	RGATCY	1 cut(s)	49
MlsI	TGGCCA	1 cut(s)	237
MluCI	AATT	1 cut(s)	17
MluNI	TGGCCA	1 cut(s)	237
MmeI	TCCRAC	1 cut(s)	84
MnlI	CCTC	5 cut(s)	100, 104, 109, 126, 211
Mox20I	TGGCCA	1 cut(s)	237
Mph1103I	ATGCAT	1 cut(s)	82
MscI	TGGCCA	1 cut(s)	237
Msp20I	TGGCCA	1 cut(s)	237
MspA1I	CMGCKG	1 cut(s)	100
MvnI	CGCG	1 cut(s)	47
MwoI	GCNNNNNNNGC	1 cut(s)	168
NdeII	GATC	2 cut(s)	49, 247
NsiI	ATGCAT	1 cut(s)	82
PkrI	GCNGC	3 cut(s)	64, 199, 244
PstI	CTGCAG	1 cut(s)	202
PsuI	RGATCY	1 cut(s)	49
SatI	GCNGC	3 cut(s)	63, 198, 243
Sau3AI	GATC	2 cut(s)	49, 247
SetI	ASST	5 cut(s)	39, 124, 147, 199, 222
SfaNI	GCATC	1 cut(s)	67
SfcI	CTRYAG	1 cut(s)	198
SmlI	CTYRAG	1 cut(s)	179
SmoI	CTYRAG	1 cut(s)	179
Sse9I	AATT	1 cut(s)	17
SsiI	CCGC	3 cut(s)	47, 98, 140
SspMI	CTAG	1 cut(s)	53
TaaI	ACNGT	1 cut(s)	254
TasI	AATT	1 cut(s)	17
TscAI	CASTG	1 cut(s)	257
TseI	GCWGC	3 cut(s)	62, 197, 242
TspDTI	ATGAA	1 cut(s)	143
TspRI	CASTG	1 cut(s)	257
XspI	CTAG	1 cut(s)	53
Zsp2I	ATGCAT	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.