Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004162

Physical Location & Seq

Genomic Coordinates Forward (+)

5803788 .. 5806422

Gene Structure 2635 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G09080.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGGAAGCTGTGAAGGAAGCTGTGAGGAAGATTAAGTCCTTAGTCATACCACATGCAGATGAGAAAGATAATGGTATTGTTTTTGAGATCAAGCTTAATGAGACAGATCAGAGAGTAGAAAAGTGGGGTCTTGATCCTTCTTTGGATTTTTTCGAGGTAACAGGGAACTGTAATTTGGGACGTCCAAATAGCGAGGGATCTAATCAGTCTCTCATGGGTTCTGTGACCATTAGGAACATCTTTAATCCTAAGCTGGATGATCTTTTGTCTAAGATTGAGTATGTACGGTTTCTGGAAGCTGTTAAAAAACCTAGAAACCGTACCTTCAAAACGAGCTTCTTCAATAGCAGAAAACTTAGCCCAGTGTTCACTGGAGGACCAGGCTATGAGGATCTAGTGCCTCCAATGTTTGTGGGTCGAGATTGTCTTAAAGCTACTATAACTGAGAACTTAACCCGTCAGAGAGAACTCACATATGGAGTTATGTTTGAAGAGATAATAACCCGAGATGAAAACAGGCGAATCTCTGAAAATGGGCTCTTGTTATCGCCTGACGGTGGAATCAGTATTAATGGACCTCCAACAACTCTAAGTGGTACCGGTATTGACCACATTGCCACTCTACAAGCCAACATAACCCGAGACAACACCAAGCTAGTGAATGGGGCTGTTGTTGGAGAGAAGAATATCTTTCAGGTGGATCAAGGCTTAGGTATAGGAAATAATTTTCCGCTCTTCAACCGCCACCAACTATCATTAACAAGTTTCATTCAGCTGAAGCAAGTAGAAGAAGGATCCGATAAACCACAACCACCAGTTCTAGTCCTCCATGGTCGTTACGGTGGCTGCATAGGCGATCTTCCAAGCTATGATGTTTTTGCTCTTGGTGGACCTAACTCCGTTCGAGGATACAGCATGGGAGAACTTGGTGCAGCTAAAAACATTCTCGAGCTTGGTGCTGAGATTAGAATTCCTGTCAAGAACACACATGTGTATGCATTTGCTGAGCATGGAAACGATTTGGGAAGTTCAAAGGATGTGAAAGGGAATCCAACAGGGCTTTACAGGAAAATGGGACATGGTTCATCGTATGGTTTGGGTGTGAAACTCGGTATGGTGCGAGCTGAATATACTGTACGTCACAATCGTGGAACCGGTGCTCTGTTTCTCAGGTTCGGGGAGAGATACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006605 GO:0006810 GO:0006886 GO:0006996 GO:0007275 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009653 GO:0009657 GO:0009658 GO:0009662 GO:0009707 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009941 GO:0009987 GO:0010006 GO:0010033 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019867 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031350 GO:0031351 GO:0031354 GO:0031355 GO:0031358 GO:0031359 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0048598 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0061927 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072596 GO:0072598 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bac_surface_Ag

Protein Analysis

396

Amino Acids

43.63

Weight (kDa)

8.57

Isoelectric Point (pI)

25.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Omp85	PF01103	158 - 381	3e-16	Omp85 superfamily domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004162)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46740 AT4G09080 AT4G09080 AT4G09080
fragaria_vesca	FvH4_3g28760 FvH4_3g28760 FvH4_3g28760 FvH4_5g29410
malus_domestica	MD03G1086500.v1.1 MD11G1095600.v1.1
prunus_persica	Prupe.6G071100_v2.0.a1
pyrus_communis	pycom03g06860 pycom11g08100 pycom11g08110
rosa_chinensis	RchiOBHm_Chr5g0052291 RchiOBHm_Chr7g0222311
rosa_laevigata	RLG00000002071 RLG00000034828
rosa_multiflora	Rmu_sc0007069.1_g000009 Rmu_sc0028377.1_g000001 Rmu_sc0032875.1_g000001 Rmu_sc0032876.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028120 Rroxscaffold_3G00237120
rosa_rugosa	Rorug05G0273100 Rorug07G0207600
rosa_samantha	Rh5CG382000 Rh5DG371900 Rh7AG349900 Rh7DG346100
rosa_wichuraiana	Rw5G032630 Rw5G032670 Rw7G029530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	184
Acc65I	GGTACC	1 cut(s)	596
AccB1I	GGYRCC	1 cut(s)	596
AccBSI	CCGCTC	1 cut(s)	733
AciI	CCGC	2 cut(s)	731, 742
AclWI	GGATC	6 cut(s)	128, 205, 399, 708, 789, 802
AcsI	RAATTY	1 cut(s)	969
AcuI	CTGAAG	1 cut(s)	797
AcyI	GRCGYC	1 cut(s)	181
AfaI	GTAC	4 cut(s)	285, 322, 598, 1137
AfiI	CCNNNNNNNGG	1 cut(s)	557
AflIII	ACRYGT	1 cut(s)	988
AgeI	ACCGGT	2 cut(s)	599, 1154
AgsI	TTSAA	5 cut(s)	328, 343, 491, 739, 1032
AjnI	CCWGG	1 cut(s)	379
AjuI	GAANNNNNNNTTGG	2 cut(s)	158, 190
AleI	CACNNNNGTG	2 cut(s)	989, 1146
Alw21I	GWGCWC	1 cut(s)	1162
Alw26I	GTCTC	3 cut(s)	95, 213, 636
AlwI	GGATC	6 cut(s)	128, 205, 399, 708, 789, 802
Ama87I	CYCGRG	3 cut(s)	504, 639, 947
ApeKI	GCWGC	2 cut(s)	846, 932
ApoI	RAATTY	1 cut(s)	969
AseI	ATTAAT	1 cut(s)	570
AsiGI	ACCGGT	2 cut(s)	599, 1154
Asp718I	GGTACC	1 cut(s)	596
AspS9I	GGNCC	3 cut(s)	377, 575, 890
AvaI	CYCGRG	3 cut(s)	504, 639, 947
AvaII	GGWCC	3 cut(s)	377, 575, 890
BamHI	GGATCC	1 cut(s)	794
BanI	GGYRCC	1 cut(s)	596
BanII	GRGCYC	1 cut(s)	540
Bbv12I	GWGCWC	1 cut(s)	1162
BbvI	GCAGC	2 cut(s)	833, 944
BcgI	CGANNNNNNTGC	2 cut(s)	938, 972
BciT130I	CCWGG	1 cut(s)	381
BciVI	GTATCC	1 cut(s)	902
BcoDI	GTCTC	3 cut(s)	95, 213, 636
BfaI	CTAG	4 cut(s)	312, 395, 656, 821
BfuI	GTATCC	1 cut(s)	902
BisI	GCNGC	2 cut(s)	847, 933
BlpI	GCTNAGC	1 cut(s)	1005
BlsI	GCNGC	2 cut(s)	848, 934
Bme1390I	CCNGG	1 cut(s)	381
Bme18I	GGWCC	3 cut(s)	377, 575, 890
BmeT110I	CYCGRG	3 cut(s)	504, 639, 947
BmgT120I	GGNCC	3 cut(s)	377, 575, 890
BmiI	GGNNCC	3 cut(s)	598, 796, 1153
BmrFI	CCNGG	1 cut(s)	381
BmrI	ACTGGG	1 cut(s)	356
BmuI	ACTGGG	1 cut(s)	356
BpmI	CTGGAG	1 cut(s)	393
Bpu10I	CCTNAGC	2 cut(s)	249, 709
Bpu1102I	GCTNAGC	1 cut(s)	1005
BsaHI	GRCGYC	1 cut(s)	181
BsaJI	CCNNGG	1 cut(s)	829
BsaWI	WCCGGW	2 cut(s)	599, 1154
Bsc4I	CCNNNNNNNGG	1 cut(s)	557
Bse118I	RCCGGY	2 cut(s)	599, 1154
Bse1I	ACTGG	3 cut(s)	362, 376, 815
Bse3DI	GCAATG	1 cut(s)	612
BseBI	CCWGG	1 cut(s)	381
BseDI	CCNNGG	1 cut(s)	829
BseGI	GGATG	2 cut(s)	262, 1042
BseLI	CCNNNNNNNGG	1 cut(s)	557
BseMI	GCAATG	1 cut(s)	612
BseMII	CTCAG	4 cut(s)	435, 951, 996, 1183
BseNI	ACTGG	3 cut(s)	362, 376, 815
BseXI	GCAGC	2 cut(s)	833, 944
BsgI	GTGCAG	1 cut(s)	951
BshNI	GGYRCC	1 cut(s)	596
BshTI	ACCGGT	2 cut(s)	599, 1154
BsiHKAI	GWGCWC	1 cut(s)	1162
BsiHKCI	CYCGRG	3 cut(s)	504, 639, 947
BsiSI	CCGG	2 cut(s)	600, 1155
BslFI	GGGAC	2 cut(s)	192, 1089
BslI	CCNNNNNNNGG	1 cut(s)	557
BsmAI	GTCTC	3 cut(s)	95, 213, 636
BsmFI	GGGAC	2 cut(s)	192, 1089
BsoBI	CYCGRG	3 cut(s)	504, 639, 947
Bsp1286I	GDGCHC	2 cut(s)	540, 1162
Bsp143I	GATC	9 cut(s)	87, 106, 133, 197, 259, 391, 700, 794, 856
Bsp1720I	GCTNAGC	1 cut(s)	1005
Bsp19I	CCATGG	1 cut(s)	829
BspACI	CCGC	2 cut(s)	731, 742
BspCNI	CTCAG	4 cut(s)	436, 952, 997, 1182
BspLI	GGNNCC	3 cut(s)	598, 796, 1153
BspPI	GGATC	6 cut(s)	128, 205, 399, 708, 789, 802
BspQI	GCTCTTC	1 cut(s)	740
BspT107I	GGYRCC	1 cut(s)	596
BsrBI	CCGCTC	1 cut(s)	733
BsrDI	GCAATG	1 cut(s)	612
BsrFI	RCCGGY	2 cut(s)	599, 1154
BsrI	ACTGG	3 cut(s)	362, 376, 815
BssAI	RCCGGY	2 cut(s)	599, 1154
BssECI	CCNNGG	1 cut(s)	829
BssMI	GATC	9 cut(s)	87, 106, 133, 197, 259, 391, 700, 794, 856
BssNI	GRCGYC	1 cut(s)	181
BssT1I	CCWWGG	1 cut(s)	829
Bst2UI	CCWGG	1 cut(s)	381
Bst4CI	ACNGT	6 cut(s)	170, 288, 320, 557, 842, 1135
Bst6I	CTCTTC	2 cut(s)	486, 740
BstACI	GRCGYC	1 cut(s)	181
BstC8I	GCNNGC	1 cut(s)	1122
BstDSI	CCRYGG	1 cut(s)	829
BstF5I	GGATG	2 cut(s)	262, 1042
BstKTI	GATC	9 cut(s)	90, 109, 136, 200, 262, 394, 703, 797, 859
BstMAI	GTCTC	3 cut(s)	95, 213, 636
BstMBI	GATC	9 cut(s)	87, 106, 133, 197, 259, 391, 700, 794, 856
BstMWI	GCNNNNNNNGC	1 cut(s)	852
BstNI	CCWGG	1 cut(s)	381
BstNSI	RCATGY	2 cut(s)	56, 992
BstSCI	CCNGG	1 cut(s)	379
BstV1I	GCAGC	2 cut(s)	833, 944
BstX2I	RGATCY	3 cut(s)	197, 391, 794
BstYI	RGATCY	3 cut(s)	197, 391, 794
BsuI	GTATCC	1 cut(s)	902
BtgI	CCRYGG	1 cut(s)	829
BtsCI	GGATG	2 cut(s)	262, 1042
BtsIMutI	CAGTG	2 cut(s)	369, 369
Cac8I	GCNNGC	1 cut(s)	1122
Cfr10I	RCCGGY	2 cut(s)	599, 1154
Cfr13I	GGNCC	3 cut(s)	377, 575, 890
Csp6I	GTAC	4 cut(s)	284, 321, 597, 1136
CspAI	ACCGGT	2 cut(s)	599, 1154
CspCI	CAANNNNNGTGG	2 cut(s)	393, 428
CviAII	CATG	7 cut(s)	53, 214, 830, 916, 989, 1010, 1079
CviQI	GTAC	4 cut(s)	284, 321, 597, 1136
DpnI	GATC	9 cut(s)	89, 108, 135, 199, 261, 393, 702, 796, 858
DpnII	GATC	9 cut(s)	87, 106, 133, 197, 259, 391, 700, 794, 856
Eam1104I	CTCTTC	2 cut(s)	486, 740
EarI	CTCTTC	2 cut(s)	486, 740
Eco130I	CCWWGG	1 cut(s)	829
Eco24I	GRGCYC	1 cut(s)	540
Eco47I	GGWCC	3 cut(s)	377, 575, 890
Eco57I	CTGAAG	1 cut(s)	797
Eco88I	CYCGRG	3 cut(s)	504, 639, 947
EcoRI	GAATTC	1 cut(s)	969
EcoRII	CCWGG	1 cut(s)	379
EcoT14I	CCWWGG	1 cut(s)	829
EcoT22I	ATGCAT	1 cut(s)	1000
EcoT38I	GRGCYC	1 cut(s)	540
ErhI	CCWWGG	1 cut(s)	829
FaeI	CATG	7 cut(s)	56, 217, 833, 919, 992, 1013, 1082
FalI	AAGNNNNNCTT	2 cut(s)	674, 706
FaqI	GGGAC	2 cut(s)	192, 1089
FatI	CATG	7 cut(s)	52, 213, 829, 915, 988, 1009, 1078
FauNDI	CATATG	1 cut(s)	475
Fnu4HI	GCNGC	2 cut(s)	847, 933
FokI	GGATG	2 cut(s)	269, 1049
FriOI	GRGCYC	1 cut(s)	540
Fsp4HI	GCNGC	2 cut(s)	847, 933
FspBI	CTAG	4 cut(s)	312, 395, 656, 821
GluI	GCNGC	2 cut(s)	847, 933
GsuI	CTGGAG	1 cut(s)	393
HapII	CCGG	2 cut(s)	600, 1155
Hin1I	GRCGYC	1 cut(s)	181
Hin1II	CATG	7 cut(s)	56, 217, 833, 919, 992, 1013, 1082
HindIII	AAGCTT	1 cut(s)	92
HinfI	GANTC	3 cut(s)	522, 561, 1048
HpaII	CCGG	2 cut(s)	600, 1155
Hpy166II	GTNNAC	2 cut(s)	369, 890
Hpy188I	TCNGA	4 cut(s)	111, 462, 529, 799
Hpy188III	TCNNGA	5 cut(s)	131, 293, 419, 947, 979
Hpy8I	GTNNAC	2 cut(s)	369, 890
HpyAV	CCTTC	4 cut(s)	7, 147, 334, 785
HpyCH4III	ACNGT	6 cut(s)	170, 288, 320, 557, 842, 1135
HpyCH4IV	ACGT	2 cut(s)	181, 1138
HpyCH4V	TGCA	4 cut(s)	56, 849, 932, 998
HpyF10VI	GCNNNNNNNGC	1 cut(s)	852
HpySE526I	ACGT	2 cut(s)	181, 1138
Hsp92I	GRCGYC	1 cut(s)	181
Hsp92II	CATG	7 cut(s)	56, 217, 833, 919, 992, 1013, 1082
KpnI	GGTACC	1 cut(s)	600
Kzo9I	GATC	9 cut(s)	87, 106, 133, 197, 259, 391, 700, 794, 856
LguI	GCTCTTC	1 cut(s)	740
Lsp1109I	GCAGC	2 cut(s)	833, 944
MaeI	CTAG	4 cut(s)	312, 395, 656, 821
MaeII	ACGT	2 cut(s)	181, 1138
MaeIII	GTNAC	4 cut(s)	157, 223, 836, 1139
MalI	GATC	9 cut(s)	89, 108, 135, 199, 261, 393, 702, 796, 858
MbiI	CCGCTC	1 cut(s)	733
MboI	GATC	9 cut(s)	87, 106, 133, 197, 259, 391, 700, 794, 856
MboII	GAAGA	7 cut(s)	40, 331, 503, 694, 727, 800, 851
MflI	RGATCY	3 cut(s)	197, 391, 794
MhlI	GDGCHC	2 cut(s)	540, 1162
MluCI	AATT	3 cut(s)	172, 724, 969
MmeI	TCCRAC	3 cut(s)	605, 655, 1076
MnlI	CCTC	9 cut(s)	18, 148, 187, 368, 382, 411, 588, 836, 899
Mph1103I	ATGCAT	1 cut(s)	1000
MseI	TTAA	8 cut(s)	33, 96, 243, 303, 429, 452, 570, 758
MslI	CAYNNNNRTG	4 cut(s)	57, 989, 993, 1146
MspA1I	CMGCKG	1 cut(s)	775
MspI	CCGG	2 cut(s)	600, 1155
MspR9I	CCNGG	1 cut(s)	381
MvaI	CCWGG	1 cut(s)	381
MwoI	GCNNNNNNNGC	1 cut(s)	852
NcoI	CCATGG	1 cut(s)	829
NdeI	CATATG	1 cut(s)	475
NdeII	GATC	9 cut(s)	87, 106, 133, 197, 259, 391, 700, 794, 856
NlaIII	CATG	7 cut(s)	56, 217, 833, 919, 992, 1013, 1082
NlaIV	GGNNCC	3 cut(s)	598, 796, 1153
NmuCI	GTSAC	2 cut(s)	223, 1139
NsiI	ATGCAT	1 cut(s)	1000
NspI	RCATGY	2 cut(s)	56, 992
OliI	CACNNNNGTG	2 cut(s)	989, 1146
PaeR7I	CTCGAG	1 cut(s)	947
PciI	ACATGT	1 cut(s)	988
PciSI	GCTCTTC	1 cut(s)	740
PcsI	WCGNNNNNNNCGW	1 cut(s)	1144
PfeI	GAWTC	3 cut(s)	522, 561, 1048
PinAI	ACCGGT	2 cut(s)	599, 1154
PkrI	GCNGC	2 cut(s)	848, 934
PscI	ACATGT	1 cut(s)	988
PshBI	ATTAAT	1 cut(s)	570
Psp6I	CCWGG	1 cut(s)	379
PspGI	CCWGG	1 cut(s)	379
PspN4I	GGNNCC	3 cut(s)	598, 796, 1153
PspPI	GGNCC	3 cut(s)	377, 575, 890
PsuI	RGATCY	3 cut(s)	197, 391, 794
PvuII	CAGCTG	1 cut(s)	775
RsaI	GTAC	4 cut(s)	285, 322, 598, 1137
RsaNI	GTAC	4 cut(s)	284, 321, 597, 1136
RseI	CAYNNNNRTG	4 cut(s)	57, 989, 993, 1146
SapI	GCTCTTC	1 cut(s)	740
SaqAI	TTAA	8 cut(s)	33, 96, 243, 303, 429, 452, 570, 758
SatI	GCNGC	2 cut(s)	847, 933
Sau3AI	GATC	9 cut(s)	87, 106, 133, 197, 259, 391, 700, 794, 856
Sau96I	GGNCC	3 cut(s)	377, 575, 890
ScrFI	CCNGG	1 cut(s)	381
SduI	GDGCHC	2 cut(s)	540, 1162
Sfr274I	CTCGAG	1 cut(s)	947
SinI	GGWCC	3 cut(s)	377, 575, 890
SlaI	CTCGAG	1 cut(s)	947
SmiMI	CAYNNNNRTG	4 cut(s)	57, 989, 993, 1146
SmlI	CTYRAG	1 cut(s)	947
SmoI	CTYRAG	1 cut(s)	947
Sse9I	AATT	3 cut(s)	172, 724, 969
SsiI	CCGC	2 cut(s)	731, 742
SspMI	CTAG	4 cut(s)	312, 395, 656, 821
StyD4I	CCNGG	1 cut(s)	379
StyI	CCWWGG	1 cut(s)	829
TaaI	ACNGT	6 cut(s)	170, 288, 320, 557, 842, 1135
TaiI	ACGT	2 cut(s)	184, 1141
TaqI	TCGA	4 cut(s)	153, 418, 904, 948
TasI	AATT	3 cut(s)	172, 724, 969
TfiI	GAWTC	3 cut(s)	522, 561, 1048
Tru1I	TTAA	8 cut(s)	33, 96, 243, 303, 429, 452, 570, 758
Tru9I	TTAA	8 cut(s)	33, 96, 243, 303, 429, 452, 570, 758
TscAI	CASTG	2 cut(s)	369, 376
TseFI	GTSAC	2 cut(s)	223, 1139
TseI	GCWGC	2 cut(s)	846, 932
Tsp45I	GTSAC	2 cut(s)	223, 1139
TspDTI	ATGAA	3 cut(s)	525, 757, 1074
TspGWI	ACGGA	1 cut(s)	889
TspRI	CASTG	2 cut(s)	369, 376
VpaK11BI	GGWCC	3 cut(s)	377, 575, 890
VspI	ATTAAT	1 cut(s)	570
XapI	RAATTY	1 cut(s)	969
XceI	RCATGY	2 cut(s)	56, 992
XhoI	CTCGAG	1 cut(s)	947
XspI	CTAG	4 cut(s)	312, 395, 656, 821
ZraI	GACGTC	1 cut(s)	182
Zsp2I	ATGCAT	1 cut(s)	1000

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.