Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0004162

Physical Location & Seq

Genomic Coordinates Forward (+)

55340028 .. 55345061

Gene Structure 5034 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G032630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2421 bp

ATGTTCGCAGCGTCCACCAGCATCTATACCCCCACCACCATCGCTCTCCTCCCTCCCTCCTCCGCTGATCGCAAATTAGCTTCTTTATGCACCGCCACCACCAACAACAACACGCGCACGCGCCGCCGTCCAATCAGCAAATGCCGCGTGTCCTCCTCCTCGTCCCTTTCTCTAAACCCTAAACCCTCCTCTTCCAACCACCTCCTCAAAAGCCCCGCCAAAACATTCGCCGGCGCCACCGCCGTCACCCTCATCCTAAACCTAACCAATTTCCCCGCCTTCATCGGCGGAGGCGGAGGAGGAGGTCATGGTTCCAATGGAGGCGGCGGCGGCGGCGGAGGAGGAGGGTTTTGGAGGAGGCTGTTTCGCCTGCATGCGGTGAAAGCGGACGAGCCGAACGAGTCGTGGGACTCTCACGGCTTGCCGGGCGACATTGTGGTCCAGCTCAGCAGGCTCAGCGGCTTCAAGAAGTACAAGGTCTCGGAGGTCTTGTTCTTCGACCGGAGGCGGTGGAGCACCGTCGGCGCCGACGACACCATCTCCGACATGGTGTCCCTCAGGCCCGGCGGCGTCTACACCAAGGCCGAGCTCCAGAACGAGCTCCAATCCCTGGCCAATTGCGGAATGTTCGAGAAGGTCGACTTCGAAGGCAAGACCAAGCCGGACGGCACCCTCGCCGTCACCGTCTCGTTCACGGAGAGCACGTGGCAGGCGGCGGAGAGGTTCCGGTGCATTAACGTGGGCCTGATGGCGCAGCCCAAGCCCATTGAGATGGACCCGGACATGACCGAGAGGGAGAAGCTCCAGTATTTGAGGAACCAGGAGAGGGATTACAAGAGGAGGATGGAGAGGGCCAGGCCGTGTTTGCTGCCGGCTCCGGTGCAAAGGGAGGTGTTGCAGATGGTGAGAGAACATGGGAAGGTGAGTGCTAGGGTGTTGCAGAAGATTCAGGCCCGGGTTCTCAAGTGGTACCAAGATGAGGGGTATCTGTGTGCCAATGTTGTCAACTTTGGGAATTTGAATACAAAGGAGGTTGTGTGTGAGGTGGTGGAGGGCGATATTACTCGGCTGCTTATTCAGTTCCGGGATAAGCTTGGCAATGTTGTAGAGGGGAAGACTCAGAGTCTTGTGGTCAAGAGAGAATTGCCCAAACAGCTTCGACCAGGTAATGCATTTAACATAGAAGCAGGGAAACAAGCTCTGAGGAACTTAACCTCCCTGGGATTGTTTTCAAACATTGAAGTGAATCCAGTACCAGATGAGAAGAATGAAGGAGGGATAGTTGTTGAAATAAATCTTAAAGAACAAGAGCACAAGACTGCTGAAGTAAGCACGGAATGGAACATTGTTCGCGGACATGGAGGCTATCCCACTTTGGCTTCACTGCTACCCGGTGGAACTGTTACATTTCAACATCGGAATATCAACGGATTGAATAGGTCCCTTATTGGTTCAGTAAGCAGTAGCAACCTCTACAACCTGCAGGATGATCTTGAGTTTAAGCTTGAGTACGTGCATCCATATCTGGATGGTGTGGACAATCCCCGTGATCGCACTCTCCGGGTAGGCTGCTTTAACGGTCGAAAATTGAGTCCAGTCTTCACTGGTGGGCCAGGGGATGATGAAGTTCCCCCTGTATGGGTTGATCGCGCTGGCATGAAGGCTAATATAACAGAGAATTTGAACCGTCAGAGCAAATTCACTTATGGTCTTGTGATGGAAGAGATAACCACACGTGATGAACAAAATCATATATGTTCAAATGGCCAAAGAGTGCTGCCCAGTGGAGGTGTCAGTGAAGATGGACCTCCAACAACTCTCAGCGGTACTGGCATTGACCATGTGGCATTTTTACAGTCAAATATCACACATGACAACACCAAGTTTGTGAATGGAACCTTAGTTGGTGAGAGGAATGTGTTTCAGGTTGACCAAGGCCTTGGCATTGGCAGCAAGTTTCCATTCTTCAACCGCCACCAGTTATCATTAACAAGATTTTTCCAGCTGAAGGAAGTGGAGGAAGGTGCTGGCAAACCACCACCACCTGTTCTTGTACTTCATGGTCACTATGGTGGCTGTGTTGGAGACCTTCCTAGTTATGATGCATTTACCCTTGGGGGTCCATATTCTGTGAGAGGTTACAACATGGGTGAGATAGGCGCCGCTAGACATATCCTCGAGCTTGCAGCTGAGCTACGGATACCGGTTAAAGGAAAAAATGTATATGCATTTGTAGAACATGGCAATGATCTTGGAAGTTCGAAGGATGTCAAGGGTAACCCAACAGAGGTATACAGGCGAGTGGGTCATGGGTCGTCATATGGTGTTGGTGTCAAGTTAGGTCCAGTAAGAGTGGAATATGTTGTGGATCACAACTCTGGCACAGGTTCAACATTCTTCCGATTTGGTGACCGATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006605 GO:0006810 GO:0006886 GO:0006996 GO:0007275 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009653 GO:0009657 GO:0009658 GO:0009662 GO:0009707 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009941 GO:0009987 GO:0010006 GO:0010033 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019867 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031350 GO:0031351 GO:0031354 GO:0031355 GO:0031358 GO:0031359 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0048598 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0061927 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072596 GO:0072598 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bac_surface_Ag

Protein Analysis

806

Amino Acids

88.37

Weight (kDa)

8.91

Isoelectric Point (pI)

42.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
POTRA1_3_Toc75	PF25282	143 - 233	1.4e-31	Toc75-like, POTRA domain
POTRA2_Toc75	PF25280	242 - 353	1.8e-55	Toc75-like, second POTRA domain
POTRA1_3_Toc75	PF25282	354 - 435	1.8e-24	Toc75-like, POTRA domain
Omp85	PF01103	474 - 789	7.8e-18	Omp85 superfamily domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004162)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46740 AT4G09080 AT4G09080 AT4G09080
fragaria_vesca	FvH4_3g28760 FvH4_3g28760 FvH4_3g28760 FvH4_5g29410
malus_domestica	MD03G1086500.v1.1 MD11G1095600.v1.1
prunus_persica	Prupe.6G071100_v2.0.a1
pyrus_communis	pycom03g06860 pycom11g08100 pycom11g08110
rosa_chinensis	RchiOBHm_Chr5g0052291 RchiOBHm_Chr7g0222311
rosa_laevigata	RLG00000002071 RLG00000034828
rosa_multiflora	Rmu_sc0007069.1_g000009 Rmu_sc0028377.1_g000001 Rmu_sc0032875.1_g000001 Rmu_sc0032876.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028120 Rroxscaffold_3G00237120
rosa_rugosa	Rorug05G0273100 Rorug07G0207600
rosa_samantha	Rh5CG382000 Rh5DG371900 Rh7AG349900 Rh7DG346100
rosa_wichuraiana	Rw5G032630 Rw5G032670 Rw7G029530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	437
Acc36I	ACCTGC	1 cut(s)	1488
Acc65I	GGTACC	1 cut(s)	969
AccB1I	GGYRCC	5 cut(s)	233, 524, 668, 969, 2159
AccB7I	CCANNNNNTGG	1 cut(s)	610
AccI	GTMKAC	3 cut(s)	573, 639, 2292
AccII	CGCG	5 cut(s)	115, 121, 147, 1353, 1650
AclWI	GGATC	1 cut(s)	2376
AcoI	YGGCCR	2 cut(s)	612, 1765
AcsI	RAATTY	3 cut(s)	1015, 1678, 1697
AcuI	CTGAAG	2 cut(s)	1344, 2027
AcvI	CACGTG	2 cut(s)	705, 1736
AcyI	GRCGYC	4 cut(s)	234, 525, 570, 2160
AfaI	GTAC	6 cut(s)	473, 971, 1254, 1511, 1828, 2055
AflIII	ACRYGT	1 cut(s)	1733
AgeI	ACCGGT	1 cut(s)	2203
AhdI	GACNNNNNGTC	2 cut(s)	550, 1122
AjnI	CCWGG	6 cut(s)	609, 819, 854, 1162, 1218, 1612
AleI	CACNNNNGTG	1 cut(s)	2070
AloI	GAACNNNNNNTCC	4 cut(s)	476, 508, 1199, 1231
Alw21I	GWGCWC	5 cut(s)	518, 591, 603, 704, 1314
Alw26I	GTCTC	3 cut(s)	484, 691, 2079
AlwI	GGATC	1 cut(s)	2376
Ama87I	CYCGRG	2 cut(s)	954, 2177
ApeKI	GCWGC	8 cut(s)	8, 754, 868, 1069, 1569, 1777, 1950, 2186
ApoI	RAATTY	3 cut(s)	1015, 1678, 1697
ArsI	GACNNNNNNTTYG	2 cut(s)	1576, 1608
AsiGI	ACCGGT	1 cut(s)	2203
Asp718I	GGTACC	1 cut(s)	969
AspLEI	GCGC	7 cut(s)	117, 123, 236, 527, 754, 1652, 2162
AsuC2I	CCSGG	8 cut(s)	426, 564, 779, 955, 956, 1085, 1392, 1562
AsuHPI	GGTGA	8 cut(s)	238, 391, 673, 916, 934, 1919, 2162, 2420
AsuII	TTCGAA	2 cut(s)	645, 2261
AvaI	CYCGRG	2 cut(s)	954, 2177
AvaII	GGWCC	6 cut(s)	439, 775, 1440, 1805, 2120, 2342
AxyI	CCTNAGG	1 cut(s)	557
BalI	TGGCCA	2 cut(s)	614, 1767
BanI	GGYRCC	5 cut(s)	233, 524, 668, 969, 2159
BanII	GRGCYC	2 cut(s)	591, 603
BbrPI	CACGTG	2 cut(s)	705, 1736
BbsI	GAAGAC	2 cut(s)	1121, 1591
Bbv12I	GWGCWC	5 cut(s)	518, 591, 603, 704, 1314
BbvI	GCAGC	8 cut(s)	20, 766, 855, 1056, 1556, 1764, 1962, 2198
BccI	CCATC	9 cut(s)	47, 545, 742, 766, 838, 895, 1523, 1711, 1796
BceAI	ACGGC	6 cut(s)	111, 227, 433, 662, 682, 844
BciT130I	CCWGG	6 cut(s)	611, 821, 856, 1164, 1220, 1614
BciVI	GTATCC	1 cut(s)	2193
BcnI	CCSGG	8 cut(s)	426, 564, 779, 955, 956, 1085, 1392, 1562
BcoDI	GTCTC	3 cut(s)	484, 691, 2079
BfaI	CTAG	3 cut(s)	930, 2094, 2166
BfmI	CTRYAG	1 cut(s)	1481
BfoI	RGCGCY	3 cut(s)	237, 528, 2163
BfuAI	ACCTGC	1 cut(s)	1488
BfuI	GTATCC	1 cut(s)	2193
BlpI	GCTNAGC	3 cut(s)	446, 455, 2190
Bme18I	GGWCC	6 cut(s)	439, 775, 1440, 1805, 2120, 2342
BmeRI	GACNNNNNGTC	2 cut(s)	550, 1122
BmeT110I	CYCGRG	2 cut(s)	954, 2177
BmrI	ACTGGG	1 cut(s)	1776
BmsI	GCATC	3 cut(s)	30, 1525, 2092
BmuI	ACTGGG	1 cut(s)	1776
BpiI	GAAGAC	2 cut(s)	1121, 1591
BpmI	CTGGAG	2 cut(s)	575, 788
Bpu1102I	GCTNAGC	3 cut(s)	446, 455, 2190
Bpu14I	TTCGAA	2 cut(s)	645, 2261
BpuEI	CTTGAG	3 cut(s)	947, 1514, 1526
BpuMI	CCSGG	8 cut(s)	426, 564, 779, 955, 956, 1085, 1392, 1562
BsaAI	YACGTR	3 cut(s)	705, 1513, 1736
BsaHI	GRCGYC	4 cut(s)	234, 525, 570, 2160
BsaI	GGTCTC	2 cut(s)	484, 2079
BsaJI	CCNNGG	9 cut(s)	579, 609, 954, 1218, 1219, 1613, 1933, 1939, 2113
BsaWI	WCCGGW	4 cut(s)	501, 726, 877, 2203
Bse118I	RCCGGY	3 cut(s)	230, 871, 2203
Bse1I	ACTGG	8 cut(s)	805, 1250, 1595, 1609, 1782, 1834, 1978, 2345
Bse21I	CCTNAGG	1 cut(s)	557
Bse3DI	GCAATG	2 cut(s)	1105, 2251
BseBI	CCWGG	6 cut(s)	611, 821, 856, 1164, 1220, 1614
BseDI	CCNNGG	9 cut(s)	579, 609, 954, 1218, 1219, 1613, 1933, 1939, 2113
BseGI	GGATG	7 cut(s)	252, 849, 1492, 1516, 1534, 1624, 2272
BseMI	GCAATG	2 cut(s)	1105, 2251
BseMII	CTCAG	7 cut(s)	460, 469, 571, 1133, 1193, 1834, 2181
BseNI	ACTGG	8 cut(s)	805, 1250, 1595, 1609, 1782, 1834, 1978, 2345
BseXI	GCAGC	8 cut(s)	20, 766, 855, 1056, 1556, 1764, 1962, 2198
Bsh1236I	CGCG	5 cut(s)	115, 121, 147, 1353, 1650
Bsh1285I	CGRYCG	2 cut(s)	502, 1582
BshNI	GGYRCC	5 cut(s)	233, 524, 668, 969, 2159
BshTI	ACCGGT	1 cut(s)	2203
BsiEI	CGRYCG	2 cut(s)	502, 1582
BsiHKAI	GWGCWC	5 cut(s)	518, 591, 603, 704, 1314
BsiHKCI	CYCGRG	2 cut(s)	954, 2177
BslFI	GGGAC	4 cut(s)	148, 422, 538, 1426
BsmAI	GTCTC	3 cut(s)	484, 691, 2079
BsmBI	CGTCTC	1 cut(s)	691
BsmFI	GGGAC	4 cut(s)	148, 422, 538, 1426
Bso31I	GGTCTC	2 cut(s)	484, 2079
BsoBI	CYCGRG	2 cut(s)	954, 2177
Bsp119I	TTCGAA	2 cut(s)	645, 2261
Bsp1286I	GDGCHC	5 cut(s)	518, 591, 603, 704, 1314
Bsp143I	GATC	6 cut(s)	67, 1489, 1549, 1645, 2248, 2368
Bsp1720I	GCTNAGC	3 cut(s)	446, 455, 2190
BspCNI	CTCAG	7 cut(s)	459, 468, 570, 1132, 1194, 1833, 2182
BspFNI	CGCG	5 cut(s)	115, 121, 147, 1353, 1650
BspMAI	CTGCAG	1 cut(s)	1485
BspMI	ACCTGC	1 cut(s)	1488
BspPI	GGATC	1 cut(s)	2376
BspT104I	TTCGAA	2 cut(s)	645, 2261
BspT107I	GGYRCC	5 cut(s)	233, 524, 668, 969, 2159
BspTNI	GGTCTC	2 cut(s)	484, 2079
BsrDI	GCAATG	2 cut(s)	1105, 2251
BsrFI	RCCGGY	3 cut(s)	230, 871, 2203
BsrI	ACTGG	8 cut(s)	805, 1250, 1595, 1609, 1782, 1834, 1978, 2345
BssAI	RCCGGY	3 cut(s)	230, 871, 2203
BssECI	CCNNGG	9 cut(s)	579, 609, 954, 1218, 1219, 1613, 1933, 1939, 2113
BssMI	GATC	6 cut(s)	67, 1489, 1549, 1645, 2248, 2368
BssNAI	GTATAC	1 cut(s)	2293
BssNI	GRCGYC	4 cut(s)	234, 525, 570, 2160
BssT1I	CCWWGG	4 cut(s)	579, 1933, 1939, 2113
Bst1107I	GTATAC	1 cut(s)	2293
Bst2UI	CCWGG	6 cut(s)	611, 821, 856, 1164, 1220, 1614
Bst4CI	ACNGT	6 cut(s)	520, 685, 1402, 1580, 1688, 1857
Bst6I	CTCTTC	2 cut(s)	196, 1716
BstACI	GRCGYC	4 cut(s)	234, 525, 570, 2160
BstBAI	YACGTR	3 cut(s)	705, 1513, 1736
BstBI	TTCGAA	2 cut(s)	645, 2261
BstDEI	CTNAG	8 cut(s)	446, 455, 557, 1119, 1202, 1820, 1900, 2190
BstEII	GGTNACC	2 cut(s)	2276, 2408
BstF5I	GGATG	7 cut(s)	252, 849, 1492, 1516, 1534, 1624, 2272
BstFNI	CGCG	5 cut(s)	115, 121, 147, 1353, 1650
BstH2I	RGCGCY	3 cut(s)	237, 528, 2163
BstHHI	GCGC	7 cut(s)	117, 123, 236, 527, 754, 1652, 2162
BstKTI	GATC	6 cut(s)	70, 1492, 1552, 1648, 2251, 2371
BstMAI	GTCTC	3 cut(s)	484, 691, 2079
BstMBI	GATC	6 cut(s)	67, 1489, 1549, 1645, 2248, 2368
BstMCI	CGRYCG	2 cut(s)	502, 1582
BstNI	CCWGG	6 cut(s)	611, 821, 856, 1164, 1220, 1614
BstNSI	RCATGY	1 cut(s)	377
BstPI	GGTNACC	2 cut(s)	2276, 2408
BstSFI	CTRYAG	1 cut(s)	1481
BstUI	CGCG	5 cut(s)	115, 121, 147, 1353, 1650
BstV1I	GCAGC	8 cut(s)	20, 766, 855, 1056, 1556, 1764, 1962, 2198
BstV2I	GAAGAC	2 cut(s)	1121, 1591
BstXI	CCANNNNNNTGG	2 cut(s)	772, 1940
BstZ17I	GTATAC	1 cut(s)	2293
Bsu36I	CCTNAGG	1 cut(s)	557
BsuI	GTATCC	1 cut(s)	2193
BtgZI	GCGATG	1 cut(s)	25
BtsCI	GGATG	7 cut(s)	252, 849, 1492, 1516, 1534, 1624, 2272
BtsI	GCAGTG	1 cut(s)	1382
BtsIMutI	CAGTG	4 cut(s)	1382, 1602, 1789, 1801
BveI	ACCTGC	1 cut(s)	1488
CfoI	GCGC	7 cut(s)	117, 123, 236, 527, 754, 1652, 2162
Cfr10I	RCCGGY	3 cut(s)	230, 871, 2203
Cfr9I	CCCGGG	1 cut(s)	954
CseI	GACGC	1 cut(s)	559
CsiI	ACCWGGT	1 cut(s)	1162
Csp6I	GTAC	6 cut(s)	472, 970, 1253, 1510, 1827, 2054
CspAI	ACCGGT	1 cut(s)	2203
CviQI	GTAC	6 cut(s)	472, 970, 1253, 1510, 1827, 2054
DdeI	CTNAG	8 cut(s)	446, 455, 557, 1119, 1202, 1820, 1900, 2190
DinI	GGCGCC	3 cut(s)	235, 526, 2161
DpnI	GATC	6 cut(s)	69, 1491, 1551, 1647, 2250, 2370
DpnII	GATC	6 cut(s)	67, 1489, 1549, 1645, 2248, 2368
DrdI	GACNNNNNNGTC	1 cut(s)	437
DriI	GACNNNNNGTC	2 cut(s)	550, 1122
DseDI	GACNNNNNNGTC	1 cut(s)	437
EaeI	YGGCCR	2 cut(s)	612, 1765
Eam1104I	CTCTTC	2 cut(s)	196, 1716
Eam1105I	GACNNNNNGTC	2 cut(s)	550, 1122
EarI	CTCTTC	2 cut(s)	196, 1716
EciI	GGCGGA	4 cut(s)	303, 309, 351, 731
Ecl136II	GAGCTC	2 cut(s)	589, 601
Eco130I	CCWWGG	4 cut(s)	579, 1933, 1939, 2113
Eco147I	AGGCCT	1 cut(s)	1938
Eco24I	GRGCYC	2 cut(s)	591, 603
Eco31I	GGTCTC	2 cut(s)	484, 2079
Eco47I	GGWCC	6 cut(s)	439, 775, 1440, 1805, 2120, 2342
Eco53kI	GAGCTC	2 cut(s)	589, 601
Eco57I	CTGAAG	2 cut(s)	1344, 2027
Eco72I	CACGTG	2 cut(s)	705, 1736
Eco81I	CCTNAGG	1 cut(s)	557
Eco88I	CYCGRG	2 cut(s)	954, 2177
Eco91I	GGTNACC	2 cut(s)	2276, 2408
EcoICRI	GAGCTC	2 cut(s)	589, 601
EcoO109I	RGGNCCY	1 cut(s)	1440
EcoO65I	GGTNACC	2 cut(s)	2276, 2408
EcoRII	CCWGG	6 cut(s)	609, 819, 854, 1162, 1218, 1612
EcoT14I	CCWWGG	4 cut(s)	579, 1933, 1939, 2113
EcoT22I	ATGCAT	3 cut(s)	1174, 2107, 2230
EcoT38I	GRGCYC	2 cut(s)	591, 603
EgeI	GGCGCC	3 cut(s)	235, 526, 2161
EheI	GGCGCC	3 cut(s)	235, 526, 2161
ErhI	CCWWGG	4 cut(s)	579, 1933, 1939, 2113
Esp3I	CGTCTC	1 cut(s)	691
FalI	AAGNNNNNCTT	2 cut(s)	626, 658
FaqI	GGGAC	4 cut(s)	148, 422, 538, 1426
FauI	CCCGC	2 cut(s)	223, 283
FauNDI	CATATG	1 cut(s)	2320
FblI	GTMKAC	3 cut(s)	573, 639, 2292
FokI	GGATG	7 cut(s)	239, 856, 1499, 1503, 1541, 1631, 2279
FriOI	GRGCYC	2 cut(s)	591, 603
FspBI	CTAG	3 cut(s)	930, 2094, 2166
GlaI	GCGC	7 cut(s)	116, 122, 235, 526, 753, 1651, 2161
GsuI	CTGGAG	2 cut(s)	575, 788
HaeII	RGCGCY	3 cut(s)	237, 528, 2163
HgaI	GACGC	1 cut(s)	559
HhaI	GCGC	7 cut(s)	117, 123, 236, 527, 754, 1652, 2162
Hin1I	GRCGYC	4 cut(s)	234, 525, 570, 2160
Hin6I	GCGC	7 cut(s)	115, 121, 234, 525, 752, 1650, 2160
HinP1I	GCGC	7 cut(s)	115, 121, 234, 525, 752, 1650, 2160
HincII	GTYRAC	3 cut(s)	640, 1006, 1930
HindII	GTYRAC	3 cut(s)	640, 1006, 1930
HindIII	AAGCTT	2 cut(s)	1091, 1502
HinfI	GANTC	7 cut(s)	401, 410, 946, 1117, 1123, 1246, 1591
HphI	GGTGA	8 cut(s)	238, 391, 673, 916, 934, 1919, 2162, 2420
Hpy166II	GTNNAC	8 cut(s)	15, 574, 640, 693, 1006, 1537, 1930, 2293
Hpy188I	TCNGA	7 cut(s)	484, 544, 1122, 1203, 1419, 1692, 2402
Hpy188III	TCNNGA	6 cut(s)	466, 592, 631, 1135, 1493, 1526
Hpy8I	GTNNAC	8 cut(s)	15, 574, 640, 693, 1006, 1537, 1930, 2293
Hpy99I	CGWCG	2 cut(s)	524, 533
HpyCH4III	ACNGT	6 cut(s)	520, 685, 1402, 1580, 1688, 1857
HpyCH4IV	ACGT	4 cut(s)	704, 738, 1512, 1735
HpyF3I	CTNAG	8 cut(s)	446, 455, 557, 1119, 1202, 1820, 1900, 2190
HpySE526I	ACGT	4 cut(s)	704, 738, 1512, 1735
Hsp92I	GRCGYC	4 cut(s)	234, 525, 570, 2160
HspAI	GCGC	7 cut(s)	115, 121, 234, 525, 752, 1650, 2160
KasI	GGCGCC	3 cut(s)	233, 524, 2159
KpnI	GGTACC	1 cut(s)	973
KroI	GCCGGC	2 cut(s)	230, 871
KroNI	GCCGGC	2 cut(s)	232, 873
Kzo9I	GATC	6 cut(s)	67, 1489, 1549, 1645, 2248, 2368
LmnI	GCTCC	5 cut(s)	513, 594, 606, 807, 880
Lsp1109I	GCAGC	8 cut(s)	20, 766, 855, 1056, 1556, 1764, 1962, 2198
LweI	GCATC	3 cut(s)	30, 1525, 2092
MabI	ACCWGGT	1 cut(s)	1162
MaeI	CTAG	3 cut(s)	930, 2094, 2166
MaeII	ACGT	4 cut(s)	704, 738, 1512, 1735
MaeIII	GTNAC	7 cut(s)	244, 679, 1402, 2063, 2138, 2276, 2408
MalI	GATC	6 cut(s)	69, 1491, 1551, 1647, 2250, 2370
MboI	GATC	6 cut(s)	67, 1489, 1549, 1645, 2248, 2368
MfeI	CAATTG	1 cut(s)	616
MhlI	GDGCHC	5 cut(s)	518, 591, 603, 704, 1314
MlsI	TGGCCA	2 cut(s)	614, 1767
MluCI	AATT	8 cut(s)	74, 268, 616, 1015, 1142, 1586, 1678, 1697
MluNI	TGGCCA	2 cut(s)	614, 1767
Mly113I	GGCGCC	3 cut(s)	234, 525, 2160
MlyI	GAGTC	5 cut(s)	404, 410, 1111, 1132, 1600
MmeI	TCCRAC	4 cut(s)	219, 567, 1835, 2062
Mox20I	TGGCCA	2 cut(s)	614, 1767
Mph1103I	ATGCAT	3 cut(s)	1174, 2107, 2230
MreI	CGCCGGCG	1 cut(s)	230
MroNI	GCCGGC	2 cut(s)	230, 871
MscI	TGGCCA	2 cut(s)	614, 1767
MseI	TTAA	8 cut(s)	735, 1176, 1211, 1299, 1500, 1575, 1988, 2208
MslI	CAYNNNNRTG	5 cut(s)	737, 770, 1241, 2070, 2244
Msp20I	TGGCCA	2 cut(s)	614, 1767
MspA1I	CMGCKG	5 cut(s)	65, 459, 1824, 2005, 2189
MunI	CAATTG	1 cut(s)	616
MvaI	CCWGG	6 cut(s)	611, 821, 856, 1164, 1220, 1614
MvnI	CGCG	5 cut(s)	115, 121, 147, 1353, 1650
NaeI	GCCGGC	2 cut(s)	232, 873
NarI	GGCGCC	3 cut(s)	234, 525, 2160
NciI	CCSGG	8 cut(s)	426, 564, 779, 955, 956, 1085, 1392, 1562
NdeI	CATATG	1 cut(s)	2320
NdeII	GATC	6 cut(s)	67, 1489, 1549, 1645, 2248, 2368
NgoMIV	GCCGGC	2 cut(s)	230, 871
NmeAIII	GCCGAG	2 cut(s)	610, 1045
NmuCI	GTSAC	4 cut(s)	244, 679, 2063, 2408
NsiI	ATGCAT	3 cut(s)	1174, 2107, 2230
NspI	RCATGY	1 cut(s)	377
NspV	TTCGAA	2 cut(s)	645, 2261
OliI	CACNNNNGTG	1 cut(s)	2070
PaeI	GCATGC	1 cut(s)	377
PaeR7I	CTCGAG	1 cut(s)	2177
PasI	CCCWGGG	1 cut(s)	1219
PceI	AGGCCT	1 cut(s)	1938
PcsI	WCGNNNNNNNCGW	5 cut(s)	396, 528, 636, 681, 701
PdiI	GCCGGC	2 cut(s)	232, 873
PfeI	GAWTC	2 cut(s)	946, 1246
PflMI	CCANNNNNTGG	1 cut(s)	610
PfoI	TCCNGGA	1 cut(s)	1083
PinAI	ACCGGT	1 cut(s)	2203
PleI	GAGTC	5 cut(s)	404, 409, 1111, 1131, 1599
PluTI	GGCGCC	3 cut(s)	237, 528, 2163
PmaCI	CACGTG	2 cut(s)	705, 1736
PmlI	CACGTG	2 cut(s)	705, 1736
PpsI	GAGTC	5 cut(s)	404, 409, 1111, 1131, 1599
Ppu21I	YACGTR	3 cut(s)	705, 1513, 1736
PpuMI	RGGWCCY	1 cut(s)	1440
Psp124BI	GAGCTC	2 cut(s)	591, 603
Psp5II	RGGWCCY	1 cut(s)	1440
Psp6I	CCWGG	6 cut(s)	609, 819, 854, 1162, 1218, 1612
PspCI	CACGTG	2 cut(s)	705, 1736
PspEI	GGTNACC	2 cut(s)	2276, 2408
PspGI	CCWGG	6 cut(s)	609, 819, 854, 1162, 1218, 1612
PspPPI	RGGWCCY	1 cut(s)	1440
PspXI	VCTCGAGB	1 cut(s)	2177
PstI	CTGCAG	1 cut(s)	1485
PvuII	CAGCTG	2 cut(s)	2005, 2189
RsaI	GTAC	6 cut(s)	473, 971, 1254, 1511, 1828, 2055
RsaNI	GTAC	6 cut(s)	472, 970, 1253, 1510, 1827, 2054
RseI	CAYNNNNRTG	5 cut(s)	737, 770, 1241, 2070, 2244
SacI	GAGCTC	2 cut(s)	591, 603
SalI	GTCGAC	1 cut(s)	638
SaqAI	TTAA	8 cut(s)	735, 1176, 1211, 1299, 1500, 1575, 1988, 2208
Sau3AI	GATC	6 cut(s)	67, 1489, 1549, 1645, 2248, 2368
SbfI	CCTGCAGG	1 cut(s)	1485
SchI	GAGTC	5 cut(s)	404, 410, 1111, 1132, 1600
SdaI	CCTGCAGG	1 cut(s)	1485
SduI	GDGCHC	5 cut(s)	518, 591, 603, 704, 1314
SexAI	ACCWGGT	1 cut(s)	1162
SfaNI	GCATC	3 cut(s)	30, 1525, 2092
SfcI	CTRYAG	1 cut(s)	1481
SfoI	GGCGCC	3 cut(s)	235, 526, 2161
Sfr274I	CTCGAG	1 cut(s)	2177
SfuI	TTCGAA	2 cut(s)	645, 2261
SgrAI	CRCCGGYG	1 cut(s)	230
SinI	GGWCC	6 cut(s)	439, 775, 1440, 1805, 2120, 2342
SlaI	CTCGAG	1 cut(s)	2177
SmaI	CCCGGG	1 cut(s)	956
SmiMI	CAYNNNNRTG	5 cut(s)	737, 770, 1241, 2070, 2244
SmlI	CTYRAG	4 cut(s)	962, 1493, 1505, 2177
SmoI	CTYRAG	4 cut(s)	962, 1493, 1505, 2177
SphI	GCATGC	1 cut(s)	377
Sse8387I	CCTGCAGG	1 cut(s)	1485
Sse9I	AATT	8 cut(s)	74, 268, 616, 1015, 1142, 1586, 1678, 1697
SseBI	AGGCCT	1 cut(s)	1938
SspDI	GGCGCC	3 cut(s)	233, 524, 2159
SspMI	CTAG	3 cut(s)	930, 2094, 2166
SstI	GAGCTC	2 cut(s)	591, 603
StuI	AGGCCT	1 cut(s)	1938
StyI	CCWWGG	4 cut(s)	579, 1933, 1939, 2113
TaaI	ACNGT	6 cut(s)	520, 685, 1402, 1580, 1688, 1857
TaiI	ACGT	4 cut(s)	707, 741, 1515, 1738
TaqI	TCGA	8 cut(s)	498, 630, 639, 645, 1159, 1582, 2178, 2261
TaqII	GACCGA	1 cut(s)	803
TasI	AATT	8 cut(s)	74, 268, 616, 1015, 1142, 1586, 1678, 1697
TatI	WGTACW	2 cut(s)	471, 2053
TfiI	GAWTC	2 cut(s)	946, 1246
Tru1I	TTAA	8 cut(s)	735, 1176, 1211, 1299, 1500, 1575, 1988, 2208
Tru9I	TTAA	8 cut(s)	735, 1176, 1211, 1299, 1500, 1575, 1988, 2208
TscAI	CASTG	4 cut(s)	1389, 1609, 1789, 1801
TseFI	GTSAC	4 cut(s)	244, 679, 2063, 2408
TseI	GCWGC	8 cut(s)	8, 754, 868, 1069, 1569, 1777, 1950, 2186
Tsp45I	GTSAC	4 cut(s)	244, 679, 2063, 2408
TspDTI	ATGAA	6 cut(s)	271, 1284, 1638, 1673, 1755, 2048
TspGWI	ACGGA	4 cut(s)	710, 1349, 1443, 2212
TspMI	CCCGGG	1 cut(s)	954
TspRI	CASTG	4 cut(s)	1389, 1609, 1789, 1801
Van91I	CCANNNNNTGG	1 cut(s)	610
VpaK11BI	GGWCC	6 cut(s)	439, 775, 1440, 1805, 2120, 2342
XapI	RAATTY	3 cut(s)	1015, 1678, 1697
XceI	RCATGY	1 cut(s)	377
XcmI	CCANNNNNNNNNTGG	1 cut(s)	544
XhoI	CTCGAG	1 cut(s)	2177
XmaI	CCCGGG	1 cut(s)	954
XmiI	GTMKAC	3 cut(s)	573, 639, 2292
XspI	CTAG	3 cut(s)	930, 2094, 2166
Zsp2I	ATGCAT	3 cut(s)	1174, 2107, 2230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.