Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0004162

Physical Location & Seq

Genomic Coordinates Reverse (-)

44581531 .. 44586796

Gene Structure 5266 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG349900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2439 bp

ATGTTGGCCGCAGCGCCGCCCAGGACCTACCGCACCCCCACCACTCTCCCTTCCTCCTCCTCCTCCGCTCGCAAATTAGCCTCGCCCTCCTCCGCCGCTACAGCCACCAACAACACCCGCGCCCTACTCGTCAAATGCTGCGCCGTCTCTCCCTCCTCCTCCTCCTCGCCCCTTTCTCACAACCCTAAACCCTCTCCGAATCTCCTCCAAAACGTCGCCAAAACCGTCGCCGGCGTCACCACCGTCACCCTCGTCTTGAACTTGAGCAATTTCCCCGCCTTCCTCGGCGGCAATTCCGGCGGCAATTCCGGCGGCGGAGGCGGCGGAGGAGGAGGTGATGGTTCGGGCGGCGGCGGAGGTTTTTGGAGGAGGCTGTTCGGGCCGCAGCTGGTGGCGAATGCCGACGAGCCACAGTCGCAGGAGTGGGACTCTCACGGATTGCCGGCCAACATTGTGGTCCAGCTCAACAAGCTCAGTGGCTTCAAGAAATACAAGGTCTCCGAGATCTTGTTCTTCGATCGGAGGCGGTGGAGCACCGTCGGGACCGAGGACTCCTTCTTTGAAATGGTCTCCCTCAGACCCGGCGGAGTCTACACCAAGGCCCAGCTCCAGAAAGAGCTCGAAACCCTGGCCAATTGCGGAATGTTCGAGAAGGTCGATTTGGAAGGGAAGACCAACCCCGACGGCACCCTCGGCGTCACCATTTCCTTCACTGAGAGCACGTGGCAGTCGGCGGACAAGTTCCGGTGTATCAACGTCGGCCTGATGGCGCAGTCCAAGCCCATCGAAATGGACCCGGACATGACTGATAAGGAGAAGATGGAGTATTTCAGGAACCAGGAGAAGGATTACAAGAGGAGGATTGAGAGGGCCAGGCCGTGTTTGTTGCCGGCTCCGGTGCAGAGGGAGGTGTTGCTCATGTTGAGAGAGCAAGGGAAGGTGAGTGCTAGGCTGTTACAGAAGATTCGGGACCGGGTTCAGAAATGGTACCAAGATGAGGGATACGCGTGTGCTCAAGTTGTCAATTTCGGGAATTTGAACACCAAAGAGGTTGTGTGTGAAGTGGTAGAAGGTGATATCACACAGCTGGTTATTCAGTTCCAGGATAAGCTCGGCAATTTTGTGGAAGGGAACACTCAGATTCCTGTGGTGAAGAGAGAATTGCCTAAACAGCTCCGACCAGGTTATGTCTTTAATATAGAAGCAGGGAAACAAGCTCTGAGGAACATAAACTCCCTGGCATTGTTTTCAAACATTGAAGTGAATCCACGACCAGATGAGAAGAATGAAGGAGGGATAATTGTTGAAATAAAGCTTAAAGAACTAGAACAAAAGACCGCCGAAGTCAGCACGGAATGGAGCATTGTTCCTGGACGTGGTGGTTATCCCACTTTGGCTTCACTGCAGCCTGGTGGGACAGTTACATTTGAACATCGAAATCTCAATGGGTTGAATAGGTCTATTCTCGGTTCAGTAACCACCAGCAACTTCTACAACCCTCAGGATGATCTTGCTTTTAAGCTTGAGTATGTGCATCCATATCTGGATGGTGTGTACAATCCCCGCAATCGCTCTCTCCGCGTAAGCTGCTTCAACAGTCGAAAATTGAGTCCAGTCTTTACTGGTGGGCCAGGGGCTGATGAAGTCCCCCCTATATGGGTTGACCGAGCGGGCATGAAGGCTAATATAACAGAGAATTTCAACCGTCAGAGCAAATTCACTTATGGACTTGTAATGGAAGAGATAACAACACGTGATGAACGCAGCCATATCTGTTCAAATGGCCAAAGAGTGTTGCCCAGTGGTGGAGTCAGTGAAGATGGACCTCCAACAACTCTGAGTGGTACGGGCATTGATCGTGTGGCATTTTTACAGTCAAATATCACACGTGATAACACCAAGTTCGTGAATGGAACTATAGTTGGTGAGAGGAATGTGTTTCAGGTTGACCAAGGCCTTGGCGTCGGCAGCAAGTTTCCATTCTTCAACCGCCACCAGCTAACGTTAACAAGATTTTTCCAGCTGAAGGAAGTGGAGGAAGGTGCCGGCAAACCACCACCACCTGTCCTTGTACTTCATGGTCACTATGGTGGCTGTGTTGGAGACCTTCCAAGTTATGATGCATTTACTCTTGGAGGTCCATATTCGGTGAGAGGTTACAACATGGGTGAAATAGGCGCTGCCAGGCAAATCCTTGAGCTTGCAGCTGAGCTACGGATACCAGTAAAGGGGACACATGTATATGCATTTGCAGAGCATGGCAATGATCTCGGAAGTTCGAAGGATGTCAAGGGTAACCCGACAGAGGTATACAGGCGAGTGGGTCATGGGTCATCATATGGTGTTGGTGTCAAGTTAGGTCTAGTAAGAGCAGAATATGCTGTGGATCACAACTCAGGCTCAGGTTCAGTATTCTTCCGATTTGGTGAGAGATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006605 GO:0006810 GO:0006886 GO:0006996 GO:0007275 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009653 GO:0009657 GO:0009658 GO:0009662 GO:0009707 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009941 GO:0009987 GO:0010006 GO:0010033 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019867 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031350 GO:0031351 GO:0031354 GO:0031355 GO:0031358 GO:0031359 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0048598 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0061927 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072596 GO:0072598 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bac_surface_Ag

Protein Analysis

812

Amino Acids

88.71

Weight (kDa)

8.82

Isoelectric Point (pI)

46.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
POTRA1_3_Toc75	PF25282	148 - 239	8.4e-41	Toc75-like, POTRA domain
POTRA2_Toc75	PF25280	248 - 359	3.5e-59	Toc75-like, second POTRA domain
POTRA1_3_Toc75	PF25282	360 - 441	7e-31	Toc75-like, POTRA domain
Omp85	PF01103	480 - 809	5.8e-20	Omp85 superfamily domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004162)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46740 AT4G09080 AT4G09080 AT4G09080
fragaria_vesca	FvH4_3g28760 FvH4_3g28760 FvH4_3g28760 FvH4_5g29410
malus_domestica	MD03G1086500.v1.1 MD11G1095600.v1.1
prunus_persica	Prupe.6G071100_v2.0.a1
pyrus_communis	pycom03g06860 pycom11g08100 pycom11g08110
rosa_chinensis	RchiOBHm_Chr5g0052291 RchiOBHm_Chr7g0222311
rosa_laevigata	RLG00000002071 RLG00000034828
rosa_multiflora	Rmu_sc0007069.1_g000009 Rmu_sc0028377.1_g000001 Rmu_sc0032875.1_g000001 Rmu_sc0032876.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028120 Rroxscaffold_3G00237120
rosa_rugosa	Rorug05G0273100 Rorug07G0207600
rosa_samantha	Rh5CG382000 Rh5DG371900 Rh7AG349900 Rh7DG346100
rosa_wichuraiana	Rw5G032630 Rw5G032670 Rw7G029530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	987
AccB1I	GGYRCC	3 cut(s)	686, 987, 2042
AccBSI	CCGCTC	2 cut(s)	68, 1670
AccI	GTMKAC	2 cut(s)	591, 2310
AccII	CGCG	3 cut(s)	120, 1007, 1581
AclI	AACGTT	1 cut(s)	2003
AclWI	GGATC	1 cut(s)	2394
AcoI	YGGCCR	4 cut(s)	6, 444, 630, 1783
AcsI	RAATTY	3 cut(s)	1033, 1696, 1715
AcuI	CTGAAG	1 cut(s)	2045
AcvI	CACGTG	3 cut(s)	723, 1754, 1889
AcyI	GRCGYC	3 cut(s)	234, 696, 1962
AfaI	GTAC	4 cut(s)	989, 1556, 1846, 2073
AfiI	CCNNNNNNNGG	9 cut(s)	844, 997, 1376, 1656, 1657, 1805, 2026, 2228, 2305
AflIII	ACRYGT	4 cut(s)	1005, 1751, 1886, 2236
AjiI	CACGTC	1 cut(s)	1376
AjuI	GAANNNNNNNTTGG	2 cut(s)	644, 676
AleI	CACNNNNGTG	1 cut(s)	2088
AloI	GAACNNNNNNTCC	2 cut(s)	1217, 1249
Alw21I	GWGCWC	4 cut(s)	536, 621, 722, 1015
Alw26I	GTCTC	4 cut(s)	151, 502, 574, 2097
AlwI	GGATC	1 cut(s)	2394
AlwNI	CAGNNNCTG	1 cut(s)	1637
ApeKI	GCWGC	9 cut(s)	11, 138, 385, 1405, 1587, 1764, 1968, 2180, 2204
ApoI	RAATTY	3 cut(s)	1033, 1696, 1715
ArsI	GACNNNNNNTTYG	4 cut(s)	542, 574, 1594, 1626
Asp718I	GGTACC	1 cut(s)	987
AspLEI	GCGC	5 cut(s)	16, 122, 143, 772, 2180
AsuC2I	CCSGG	3 cut(s)	582, 797, 974
AsuII	TTCGAA	1 cut(s)	2279
AvaII	GGWCC	7 cut(s)	24, 457, 543, 793, 970, 1823, 2138
AxyI	CCTNAGG	1 cut(s)	1500
BaeI	ACNNNNGTAYC	2 cut(s)	994, 1027
BalI	TGGCCA	2 cut(s)	632, 1785
BanI	GGYRCC	3 cut(s)	686, 987, 2042
BanII	GRGCYC	1 cut(s)	621
BbrPI	CACGTG	3 cut(s)	723, 1754, 1889
BbsI	GAAGAC	1 cut(s)	677
Bbv12I	GWGCWC	4 cut(s)	536, 621, 722, 1015
BbvI	GCAGC	9 cut(s)	23, 125, 397, 1417, 1574, 1776, 1980, 2167, 2216
BccI	CCATC	6 cut(s)	332, 760, 791, 814, 1541, 1814
BceAI	ACGGC	3 cut(s)	128, 700, 862
BcgI	CGANNNNNNTGC	2 cut(s)	2251, 2285
BciVI	GTATCC	2 cut(s)	995, 2211
BcnI	CCSGG	3 cut(s)	582, 797, 974
BcoDI	GTCTC	4 cut(s)	151, 502, 574, 2097
BfaI	CTAG	3 cut(s)	948, 1325, 2363
BfmI	CTRYAG	3 cut(s)	99, 1403, 1917
BfoI	RGCGCY	2 cut(s)	17, 2181
BfuI	GTATCC	2 cut(s)	995, 2211
BglII	AGATCT	1 cut(s)	504
BlpI	GCTNAGC	1 cut(s)	2208
Bme18I	GGWCC	7 cut(s)	24, 457, 543, 793, 970, 1823, 2138
BmgBI	CACGTC	1 cut(s)	1376
BmiI	GGNNCC	8 cut(s)	544, 688, 795, 836, 894, 971, 989, 2044
BmrI	ACTGGG	1 cut(s)	1794
BmsI	GCATC	2 cut(s)	1543, 2110
BmuI	ACTGGG	1 cut(s)	1794
BpiI	GAAGAC	1 cut(s)	677
BplI	GAGNNNNNCTC	2 cut(s)	413, 445
BpmI	CTGGAG	1 cut(s)	593
Bpu10I	CCTNAGC	1 cut(s)	2401
Bpu1102I	GCTNAGC	1 cut(s)	2208
Bpu14I	TTCGAA	1 cut(s)	2279
BpuEI	CTTGAG	4 cut(s)	283, 999, 1544, 2216
BpuMI	CCSGG	3 cut(s)	582, 797, 974
BsaAI	YACGTR	3 cut(s)	723, 1754, 1889
BsaHI	GRCGYC	3 cut(s)	234, 696, 1962
BsaI	GGTCTC	3 cut(s)	502, 574, 2097
BsaWI	WCCGGW	2 cut(s)	744, 895
BsaXI	ACNNNNNCTCC	4 cut(s)	482, 512, 1217, 1247
Bsc4I	CCNNNNNNNGG	9 cut(s)	844, 997, 1376, 1656, 1657, 1805, 2026, 2228, 2305
Bse118I	RCCGGY	4 cut(s)	230, 442, 889, 2045
Bse1I	ACTGG	4 cut(s)	1613, 1627, 1800, 2222
Bse21I	CCTNAGG	1 cut(s)	1500
Bse3DI	GCAATG	1 cut(s)	2269
BseGI	GGATG	4 cut(s)	1510, 1534, 1552, 2290
BseLI	CCNNNNNNNGG	9 cut(s)	844, 997, 1376, 1656, 1657, 1805, 2026, 2228, 2305
BseMI	GCAATG	1 cut(s)	2269
BseNI	ACTGG	4 cut(s)	1613, 1627, 1800, 2222
BseXI	GCAGC	9 cut(s)	23, 125, 397, 1417, 1574, 1776, 1980, 2167, 2216
BseYI	CCCAGC	1 cut(s)	603
BsgI	GTGCAG	1 cut(s)	920
Bsh1236I	CGCG	3 cut(s)	120, 1007, 1581
Bsh1285I	CGRYCG	1 cut(s)	520
BshNI	GGYRCC	3 cut(s)	686, 987, 2042
BsiEI	CGRYCG	1 cut(s)	520
BsiHKAI	GWGCWC	4 cut(s)	536, 621, 722, 1015
BslFI	GGGAC	6 cut(s)	440, 556, 983, 1429, 1631, 2245
BslI	CCNNNNNNNGG	9 cut(s)	844, 997, 1376, 1656, 1657, 1805, 2026, 2228, 2305
BsmAI	GTCTC	4 cut(s)	151, 502, 574, 2097
BsmBI	CGTCTC	1 cut(s)	151
BsmFI	GGGAC	6 cut(s)	440, 556, 983, 1429, 1631, 2245
BsmI	GAATGC	1 cut(s)	403
Bso31I	GGTCTC	3 cut(s)	502, 574, 2097
Bsp119I	TTCGAA	1 cut(s)	2279
Bsp1286I	GDGCHC	4 cut(s)	536, 621, 722, 1015
Bsp1407I	TGTACA	1 cut(s)	1554
Bsp143I	GATC	6 cut(s)	504, 517, 1507, 1855, 2266, 2386
Bsp1720I	GCTNAGC	1 cut(s)	2208
BspFNI	CGCG	3 cut(s)	120, 1007, 1581
BspLI	GGNNCC	8 cut(s)	544, 688, 795, 836, 894, 971, 989, 2044
BspMAI	CTGCAG	1 cut(s)	1407
BspPI	GGATC	1 cut(s)	2394
BspT104I	TTCGAA	1 cut(s)	2279
BspT107I	GGYRCC	3 cut(s)	686, 987, 2042
BspTNI	GGTCTC	3 cut(s)	502, 574, 2097
BsrBI	CCGCTC	2 cut(s)	68, 1670
BsrDI	GCAATG	1 cut(s)	2269
BsrFI	RCCGGY	4 cut(s)	230, 442, 889, 2045
BsrGI	TGTACA	1 cut(s)	1554
BsrI	ACTGG	4 cut(s)	1613, 1627, 1800, 2222
BssAI	RCCGGY	4 cut(s)	230, 442, 889, 2045
BssMI	GATC	6 cut(s)	504, 517, 1507, 1855, 2266, 2386
BssNAI	GTATAC	1 cut(s)	2311
BssNI	GRCGYC	3 cut(s)	234, 696, 1962
BssT1I	CCWWGG	3 cut(s)	597, 1951, 1957
Bst1107I	GTATAC	1 cut(s)	2311
Bst4CI	ACNGT	8 cut(s)	226, 244, 414, 538, 1420, 1598, 1706, 1875
Bst6I	CTCTTC	2 cut(s)	1148, 1734
BstACI	GRCGYC	3 cut(s)	234, 696, 1962
BstAPI	GCANNNNNTGC	1 cut(s)	2378
BstAUI	TGTACA	1 cut(s)	1554
BstBAI	YACGTR	3 cut(s)	723, 1754, 1889
BstBI	TTCGAA	1 cut(s)	2279
BstC8I	GCNNGC	7 cut(s)	70, 232, 444, 891, 1672, 2047, 2202
BstEII	GGTNACC	1 cut(s)	2294
BstF5I	GGATG	4 cut(s)	1510, 1534, 1552, 2290
BstFNI	CGCG	3 cut(s)	120, 1007, 1581
BstH2I	RGCGCY	2 cut(s)	17, 2181
BstHHI	GCGC	5 cut(s)	16, 122, 143, 772, 2180
BstKTI	GATC	6 cut(s)	507, 520, 1510, 1858, 2269, 2389
BstMAI	GTCTC	4 cut(s)	151, 502, 574, 2097
BstMBI	GATC	6 cut(s)	504, 517, 1507, 1855, 2266, 2386
BstMCI	CGRYCG	1 cut(s)	520
BstNSI	RCATGY	1 cut(s)	2240
BstPI	GGTNACC	1 cut(s)	2294
BstSFI	CTRYAG	3 cut(s)	99, 1403, 1917
BstUI	CGCG	3 cut(s)	120, 1007, 1581
BstV1I	GCAGC	9 cut(s)	23, 125, 397, 1417, 1574, 1776, 1980, 2167, 2216
BstV2I	GAAGAC	1 cut(s)	677
BstX2I	RGATCY	1 cut(s)	504
BstXI	CCANNNNNNTGG	3 cut(s)	454, 790, 1958
BstYI	RGATCY	1 cut(s)	504
BstZ17I	GTATAC	1 cut(s)	2311
Bsu36I	CCTNAGG	1 cut(s)	1500
BsuI	GTATCC	2 cut(s)	995, 2211
BtrI	CACGTC	1 cut(s)	1376
BtsCI	GGATG	4 cut(s)	1510, 1534, 1552, 2290
BtsI	GCAGTG	1 cut(s)	1400
BtsIMutI	CAGTG	5 cut(s)	481, 711, 1400, 1807, 1819
Cac8I	GCNNGC	7 cut(s)	70, 232, 444, 891, 1672, 2047, 2202
CaiI	CAGNNNCTG	1 cut(s)	1637
CfoI	GCGC	5 cut(s)	16, 122, 143, 772, 2180
Cfr10I	RCCGGY	4 cut(s)	230, 442, 889, 2045
CseI	GACGC	3 cut(s)	223, 685, 1951
CsiI	ACCWGGT	1 cut(s)	1180
Csp6I	GTAC	4 cut(s)	988, 1555, 1845, 2072
CspCI	CAANNNNNGTGG	2 cut(s)	457, 492
CviAII	CATG	8 cut(s)	802, 919, 1675, 2078, 2164, 2237, 2258, 2327
CviQI	GTAC	4 cut(s)	988, 1555, 1845, 2072
DpnI	GATC	6 cut(s)	506, 519, 1509, 1857, 2268, 2388
DpnII	GATC	6 cut(s)	504, 517, 1507, 1855, 2266, 2386
EaeI	YGGCCR	4 cut(s)	6, 444, 630, 1783
Eam1104I	CTCTTC	2 cut(s)	1148, 1734
EarI	CTCTTC	2 cut(s)	1148, 1734
EciI	GGCGGA	6 cut(s)	82, 330, 339, 369, 600, 749
Ecl136II	GAGCTC	1 cut(s)	619
Eco130I	CCWWGG	3 cut(s)	597, 1951, 1957
Eco147I	AGGCCT	1 cut(s)	1956
Eco24I	GRGCYC	1 cut(s)	621
Eco31I	GGTCTC	3 cut(s)	502, 574, 2097
Eco32I	GATATC	1 cut(s)	1078
Eco47I	GGWCC	7 cut(s)	24, 457, 543, 793, 970, 1823, 2138
Eco53kI	GAGCTC	1 cut(s)	619
Eco57I	CTGAAG	1 cut(s)	2045
Eco72I	CACGTG	3 cut(s)	723, 1754, 1889
Eco81I	CCTNAGG	1 cut(s)	1500
Eco91I	GGTNACC	1 cut(s)	2294
EcoICRI	GAGCTC	1 cut(s)	619
EcoO109I	RGGNCCY	1 cut(s)	24
EcoO65I	GGTNACC	1 cut(s)	2294
EcoRV	GATATC	1 cut(s)	1078
EcoT14I	CCWWGG	3 cut(s)	597, 1951, 1957
EcoT22I	ATGCAT	2 cut(s)	2125, 2248
EcoT38I	GRGCYC	1 cut(s)	621
ErhI	CCWWGG	3 cut(s)	597, 1951, 1957
Esp3I	CGTCTC	1 cut(s)	151
FaeI	CATG	8 cut(s)	805, 922, 1678, 2081, 2167, 2240, 2261, 2330
FaqI	GGGAC	6 cut(s)	440, 556, 983, 1429, 1631, 2245
FatI	CATG	8 cut(s)	801, 918, 1674, 2077, 2163, 2236, 2257, 2326
FauI	CCCGC	4 cut(s)	125, 283, 1571, 1663
FauNDI	CATATG	1 cut(s)	2338
FblI	GTMKAC	2 cut(s)	591, 2310
FokI	GGATG	4 cut(s)	1517, 1521, 1559, 2297
FriOI	GRGCYC	1 cut(s)	621
FspBI	CTAG	3 cut(s)	948, 1325, 2363
GlaI	GCGC	5 cut(s)	15, 121, 142, 771, 2179
GsaI	CCCAGC	1 cut(s)	607
GsuI	CTGGAG	1 cut(s)	593
HaeII	RGCGCY	2 cut(s)	17, 2181
HgaI	GACGC	3 cut(s)	223, 685, 1951
HhaI	GCGC	5 cut(s)	16, 122, 143, 772, 2180
Hin1I	GRCGYC	3 cut(s)	234, 696, 1962
Hin1II	CATG	8 cut(s)	805, 922, 1678, 2081, 2167, 2240, 2261, 2330
Hin6I	GCGC	5 cut(s)	14, 120, 141, 770, 2178
HinP1I	GCGC	5 cut(s)	14, 120, 141, 770, 2178
HincII	GTYRAC	3 cut(s)	1663, 1948, 2007
HindII	GTYRAC	3 cut(s)	1663, 1948, 2007
HindIII	AAGCTT	2 cut(s)	1313, 1520
HinfI	GANTC	9 cut(s)	199, 428, 551, 588, 964, 1141, 1264, 1609, 1809
HpaI	GTTAAC	1 cut(s)	2007
Hpy166II	GTNNAC	6 cut(s)	592, 1555, 1663, 1948, 2007, 2311
Hpy8I	GTNNAC	6 cut(s)	592, 1555, 1663, 1948, 2007, 2311
Hpy99I	CGWCG	7 cut(s)	218, 230, 407, 542, 686, 761, 1967
HpyCH4III	ACNGT	8 cut(s)	226, 244, 414, 538, 1420, 1598, 1706, 1875
HpyCH4IV	ACGT	7 cut(s)	213, 722, 756, 1375, 1753, 1888, 2003
HpyCH4V	TGCA	7 cut(s)	901, 1405, 1534, 2123, 2204, 2246, 2252
HpySE526I	ACGT	7 cut(s)	213, 722, 756, 1375, 1753, 1888, 2003
Hsp92I	GRCGYC	3 cut(s)	234, 696, 1962
Hsp92II	CATG	8 cut(s)	805, 922, 1678, 2081, 2167, 2240, 2261, 2330
HspAI	GCGC	5 cut(s)	14, 120, 141, 770, 2178
KpnI	GGTACC	1 cut(s)	991
KroI	GCCGGC	4 cut(s)	230, 442, 889, 2045
KroNI	GCCGGC	4 cut(s)	232, 444, 891, 2047
KspAI	GTTAAC	1 cut(s)	2007
Kzo9I	GATC	6 cut(s)	504, 517, 1507, 1855, 2266, 2386
LmnI	GCTCC	5 cut(s)	531, 612, 898, 1179, 1359
Lsp1109I	GCAGC	9 cut(s)	23, 125, 397, 1417, 1574, 1776, 1980, 2167, 2216
LweI	GCATC	2 cut(s)	1543, 2110
MabI	ACCWGGT	1 cut(s)	1180
MaeI	CTAG	3 cut(s)	948, 1325, 2363
MaeII	ACGT	7 cut(s)	213, 722, 756, 1375, 1753, 1888, 2003
MaeIII	GTNAC	9 cut(s)	235, 244, 697, 954, 1420, 1474, 2081, 2156, 2294
MalI	GATC	6 cut(s)	506, 519, 1509, 1857, 2268, 2388
MbiI	CCGCTC	2 cut(s)	68, 1670
MboI	GATC	6 cut(s)	504, 517, 1507, 1855, 2266, 2386
MfeI	CAATTG	1 cut(s)	634
MflI	RGATCY	1 cut(s)	504
MhlI	GDGCHC	4 cut(s)	536, 621, 722, 1015
MlsI	TGGCCA	2 cut(s)	632, 1785
MluI	ACGCGT	1 cut(s)	1005
MluNI	TGGCCA	2 cut(s)	632, 1785
MlyI	GAGTC	5 cut(s)	422, 545, 597, 1618, 1818
MmeI	TCCRAC	3 cut(s)	1201, 1853, 2080
Mox20I	TGGCCA	2 cut(s)	632, 1785
Mph1103I	ATGCAT	2 cut(s)	2125, 2248
MreI	CGCCGGCG	1 cut(s)	230
MroNI	GCCGGC	4 cut(s)	230, 442, 889, 2045
MscI	TGGCCA	2 cut(s)	632, 1785
MseI	TTAA	4 cut(s)	1194, 1317, 1518, 2006
MslI	CAYNNNNRTG	5 cut(s)	788, 1259, 2088, 2241, 2262
Msp20I	TGGCCA	2 cut(s)	632, 1785
MspA1I	CMGCKG	4 cut(s)	388, 1087, 2023, 2207
MunI	CAATTG	1 cut(s)	634
Mva1269I	GAATGC	1 cut(s)	403
MvnI	CGCG	3 cut(s)	120, 1007, 1581
NaeI	GCCGGC	4 cut(s)	232, 444, 891, 2047
NciI	CCSGG	3 cut(s)	582, 797, 974
NdeI	CATATG	1 cut(s)	2338
NdeII	GATC	6 cut(s)	504, 517, 1507, 1855, 2266, 2386
NgoMIV	GCCGGC	4 cut(s)	230, 442, 889, 2045
NlaIII	CATG	8 cut(s)	805, 922, 1678, 2081, 2167, 2240, 2261, 2330
NlaIV	GGNNCC	8 cut(s)	544, 688, 795, 836, 894, 971, 989, 2044
NmeAIII	GCCGAG	3 cut(s)	264, 672, 1092
NmuCI	GTSAC	4 cut(s)	235, 244, 697, 2081
NsiI	ATGCAT	2 cut(s)	2125, 2248
NspI	RCATGY	1 cut(s)	2240
NspV	TTCGAA	1 cut(s)	2279
OliI	CACNNNNGTG	1 cut(s)	2088
PceI	AGGCCT	1 cut(s)	1956
PciI	ACATGT	1 cut(s)	2236
PcsI	WCGNNNNNNNCGW	2 cut(s)	222, 654
PctI	GAATGC	1 cut(s)	403
PdiI	GCCGGC	4 cut(s)	232, 444, 891, 2047
PfeI	GAWTC	4 cut(s)	199, 964, 1141, 1264
PfoI	TCCNGGA	2 cut(s)	1101, 1369
Ple19I	CGATCG	1 cut(s)	520
PleI	GAGTC	5 cut(s)	422, 545, 596, 1617, 1817
PmaCI	CACGTG	3 cut(s)	723, 1754, 1889
PmlI	CACGTG	3 cut(s)	723, 1754, 1889
PpsI	GAGTC	5 cut(s)	422, 545, 596, 1617, 1817
Ppu21I	YACGTR	3 cut(s)	723, 1754, 1889
PpuMI	RGGWCCY	1 cut(s)	24
PscI	ACATGT	1 cut(s)	2236
Psp124BI	GAGCTC	1 cut(s)	621
Psp1406I	AACGTT	1 cut(s)	2003
Psp5II	RGGWCCY	1 cut(s)	24
PspCI	CACGTG	3 cut(s)	723, 1754, 1889
PspEI	GGTNACC	1 cut(s)	2294
PspFI	CCCAGC	1 cut(s)	603
PspN4I	GGNNCC	8 cut(s)	544, 688, 795, 836, 894, 971, 989, 2044
PspPPI	RGGWCCY	1 cut(s)	24
PstI	CTGCAG	1 cut(s)	1407
PstNI	CAGNNNCTG	1 cut(s)	1637
PsuI	RGATCY	1 cut(s)	504
PvuI	CGATCG	1 cut(s)	520
PvuII	CAGCTG	4 cut(s)	388, 1087, 2023, 2207
RsaI	GTAC	4 cut(s)	989, 1556, 1846, 2073
RsaNI	GTAC	4 cut(s)	988, 1555, 1845, 2072
RseI	CAYNNNNRTG	5 cut(s)	788, 1259, 2088, 2241, 2262
SacI	GAGCTC	1 cut(s)	621
SaqAI	TTAA	4 cut(s)	1194, 1317, 1518, 2006
Sau3AI	GATC	6 cut(s)	504, 517, 1507, 1855, 2266, 2386
SchI	GAGTC	5 cut(s)	422, 545, 597, 1618, 1818
SduI	GDGCHC	4 cut(s)	536, 621, 722, 1015
SexAI	ACCWGGT	1 cut(s)	1180
SfaNI	GCATC	2 cut(s)	1543, 2110
SfcI	CTRYAG	3 cut(s)	99, 1403, 1917
SfuI	TTCGAA	1 cut(s)	2279
SgrAI	CRCCGGYG	1 cut(s)	230
SinI	GGWCC	7 cut(s)	24, 457, 543, 793, 970, 1823, 2138
SmiMI	CAYNNNNRTG	5 cut(s)	788, 1259, 2088, 2241, 2262
SmlI	CTYRAG	4 cut(s)	262, 1014, 1523, 2195
SmoI	CTYRAG	4 cut(s)	262, 1014, 1523, 2195
SseBI	AGGCCT	1 cut(s)	1956
SspMI	CTAG	3 cut(s)	948, 1325, 2363
SstI	GAGCTC	1 cut(s)	621
StuI	AGGCCT	1 cut(s)	1956
StyI	CCWWGG	3 cut(s)	597, 1951, 1957
TaaI	ACNGT	8 cut(s)	226, 244, 414, 538, 1420, 1598, 1706, 1875
TaiI	ACGT	7 cut(s)	216, 725, 759, 1378, 1756, 1891, 2006
TaqI	TCGA	8 cut(s)	516, 621, 648, 657, 786, 1435, 1600, 2279
TaqII	GACCGA	2 cut(s)	560, 1680
TatI	WGTACW	2 cut(s)	1554, 2071
TfiI	GAWTC	4 cut(s)	199, 964, 1141, 1264
Tru1I	TTAA	4 cut(s)	1194, 1317, 1518, 2006
Tru9I	TTAA	4 cut(s)	1194, 1317, 1518, 2006
TscAI	CASTG	5 cut(s)	481, 718, 1407, 1807, 1819
TseFI	GTSAC	4 cut(s)	235, 244, 697, 2081
TseI	GCWGC	9 cut(s)	11, 138, 385, 1405, 1587, 1764, 1968, 2180, 2204
Tsp45I	GTSAC	4 cut(s)	235, 244, 697, 2081
TspDTI	ATGAA	5 cut(s)	1302, 1656, 1691, 1773, 2066
TspGWI	ACGGA	3 cut(s)	450, 1367, 2230
TspRI	CASTG	5 cut(s)	481, 718, 1407, 1807, 1819
VpaK11BI	GGWCC	7 cut(s)	24, 457, 543, 793, 970, 1823, 2138
XapI	RAATTY	3 cut(s)	1033, 1696, 1715
XceI	RCATGY	1 cut(s)	2240
XmiI	GTMKAC	2 cut(s)	591, 2310
XspI	CTAG	3 cut(s)	948, 1325, 2363
Zsp2I	ATGCAT	2 cut(s)	2125, 2248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.