Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0004162

Physical Location & Seq

Genomic Coordinates Forward (+)

25064400 .. 25069041

Gene Structure 4642 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002071

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2457 bp

ATGTTGGCCGCTGCGCCGCCCAGGACCTACCGCACCCCCACCACTCTCCCTTCCTCCTCCTCCTCCACTCGCAAATTAGCCTCGCCCTCCTCCGCCGCTACAGCCACCAACAACACCCGCGCCCTAATCGTCAAATGCTGCGGCGTCTCTCCCTCCTCCTCCTCCTTCTCGCCCCTTTCTCAAAACCCTAAACCCTCTTCGAATCTTCTCCAAAACGTCGCCAAAACCGTCGCTGGCGTCACCACCGTCACCCTCGTCTTGAACTTGAGCAATTTCCCCTCCTTCCTCGGAGGCGGCGGCGGCGGCGGCAATTCCGCCGGCGGAGGCGGAGGCGGCGGAGGAGGTGATGGTTCGAGCGGCGGCGGCGGCGGCGGAGGTTTTTGGAGGAGGCTGTTCGGGCCGCAGATGGTGGCGAATGCCGACGAGCCACAGTCTCAGGAGTGGGACTCTCACGGATTGCCGGCCAACATTGTGGTCCAGCTCAACAAGCTCAGTGGCTTCAAGAAATACAAGGTCTCCGAGATCTTGTTCTTCGATCGGAGGCGGTGGAGCACCGTCGGGACCGAGGACTCCTTCTTTGAAATGGTCTCCCTTAGACCCGGCGGAGTCTACACCAAGGCCCAGCTCCAGAAAGAGCTCGAAACCCTGGCCAATTGCGGAATGTTCGAGAAGGTCGATCTGGAAGGGAAGACCAACCCCGACGGCACCCTCGGCGTCACCATTTCCTTCACTGAGAGCACGTGGCAGTCGGCGGACAAGTTCCGGTGTATCAACGTGGGCCTGATGGCGCAGTCCAAGCCCATCGAAATGGACCCGGACATGACTGATAAGGAGAAGATGGAGTATTTCAGGAACCAGGAGAAGGATTACAAGAGGAGGATTGAGAGGGCCAGGCCGTGTTTGTTGCCGGCTCCGGTGCAGAGGGAGGTGTTGCTCATGTTGAGAGAGCAAGGGAAGGTGAGTGCTAGGCTGTTGCAGAAGATTCGGGACCGGGTTCAGAAATGGTACCAAGATGAGGGATACGCGTGTGCTCAAGTTGTCAATTTCGGGAATTTGAACACCAAAGAGGTTGTGTGTGAAGTGGTGGAAGGTGATATCACGCAGCTGGTTATTCAGTTTCAGGATAAGCTTGGCAATTTTGTGGAAGGGAACACTCAGATTCCTGTGGTGAAGAGAGAATTGCCCAAACAGCTCCGACCAGGTTATGTCTTTAATATAGAAGCAGGGAAACAAGCTCTGAGGAACATAAACTCCCTGGCATTATTTTCAAACATTGAAGTGAATCCACGACCGGATGAGAAGAATGAAGGAGGGATAATTGTTGAAATAAAGCTTAAAGAACTAGAACAAAAGACCGCCGAAGTTAGCACGGAATGGAGCATTGTTCCTGGACGTGGTGGTTATCCCACTTTGGCTTCACTGCAGCCTGGTGGGACAGTTACATTTGAACATCGAAATCTCAATGGGTTGAATAGGTCTATTCTCGGTTCAGTAACCACCAGCAACTTTTACAACCCTCAGGATGATCTTGCTTTTAAGCTTGAGTATGTGCATCCATATCTGGATGGTGTGTACAATCCCCGCAATCGCTCTCTCCGCGTAAGCTGCTTCAACAGTCGAAAATTGAGTCCAGTCTTTACTGGTGGGCCAGGGGCTGATGAAGTCCCCCCTATATGGGTTGACCGAGCGGGCATGAAGGCTAATATAACAGAGAATTTCAACCGACAGAGCAAATTCACTTATGGACTTGTAATGGAAGAGATAACAACACGTGATGAACGCAGCCATATCTGTTCAAATGGCCAAAGAGTGTTGCCCAGTGGTGGAGTCAGTGAAGATGGACCTCCAACAACTTTGAGTGGTACGGGCATTGATCGTATGGCATTTTTACAGTCAAATATCACACGTGATAACACCAAGTTCGTGAATGGAACTATAGTTGGTGAGAGGAATGTGTTTCAGGTTGACCAAGGCCTTGGCATTGGCAGCAAGTTTCCATTCTTCAACCGCCACCAGCTAACATTAACAAGATTTTTCCAGCTGAAGGAAGTGGAGGAAGGTGCTGGCAAACCACCACCACCTGTCCTTGTACTTCATGGTCACTATGGTGGCTGTGTTGGAGACCTTCCAAGTTATGATGCATTTACTCTTGGAGGTCCATATTCTGTGAGAGGTTACAACATGGGTGAAATAGGTGCTGCCAGGCAAATCCTTGAGCTTGCAGCTGAGCTACGGATACCAGTAAAAGGGACGCATGTATATGCATTTGCAGAACATGGCAATGATCTCGGAAGTTCAAAGGATGTCAAGGGTAACCCGACAGAGGTATACAGGCGATTGGGTCATGGGTCATCATATGGTGTTGGTGTCAAGTTAGGTCTAGTAAGAGCGGAATATGCTGTGGATCACAACTCAGGCTCAGGTTCAGTATTCTTCCGATTTGGTGAGAGATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006605 GO:0006810 GO:0006886 GO:0006996 GO:0007275 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009653 GO:0009657 GO:0009658 GO:0009662 GO:0009707 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009941 GO:0009987 GO:0010006 GO:0010033 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019867 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031350 GO:0031351 GO:0031354 GO:0031355 GO:0031358 GO:0031359 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0048598 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0061927 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072596 GO:0072598 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bac_surface_Ag

Protein Analysis

819

Amino Acids

89.19

Weight (kDa)

8.82

Isoelectric Point (pI)

46.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
POTRA1_3_Toc75	PF25282	154 - 245	8.5e-41	Toc75-like, POTRA domain
POTRA2_Toc75	PF25280	254 - 365	3.5e-59	Toc75-like, second POTRA domain
POTRA1_3_Toc75	PF25282	366 - 447	7e-31	Toc75-like, POTRA domain
Omp85	PF01103	486 - 815	4.6e-20	Omp85 superfamily domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0004162)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46740 AT4G09080 AT4G09080 AT4G09080
fragaria_vesca	FvH4_3g28760 FvH4_3g28760 FvH4_3g28760 FvH4_5g29410
malus_domestica	MD03G1086500.v1.1 MD11G1095600.v1.1
prunus_persica	Prupe.6G071100_v2.0.a1
pyrus_communis	pycom03g06860 pycom11g08100 pycom11g08110
rosa_chinensis	RchiOBHm_Chr5g0052291 RchiOBHm_Chr7g0222311
rosa_laevigata	RLG00000002071 RLG00000034828
rosa_multiflora	Rmu_sc0007069.1_g000009 Rmu_sc0028377.1_g000001 Rmu_sc0032875.1_g000001 Rmu_sc0032876.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028120 Rroxscaffold_3G00237120
rosa_rugosa	Rorug05G0273100 Rorug07G0207600
rosa_samantha	Rh5CG382000 Rh5DG371900 Rh7AG349900 Rh7DG346100
rosa_wichuraiana	Rw5G032630 Rw5G032670 Rw7G029530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1005
AccB1I	GGYRCC	2 cut(s)	704, 1005
AccBSI	CCGCTC	3 cut(s)	357, 1688, 2390
AccI	GTMKAC	2 cut(s)	609, 2328
AccII	CGCG	3 cut(s)	120, 1025, 1599
AclWI	GGATC	1 cut(s)	2412
AcoI	YGGCCR	4 cut(s)	6, 462, 648, 1801
AcsI	RAATTY	3 cut(s)	1051, 1714, 1733
AcuI	CTGAAG	1 cut(s)	2063
AcvI	CACGTG	3 cut(s)	741, 1772, 1907
AcyI	GRCGYC	3 cut(s)	144, 237, 714
AfaI	GTAC	4 cut(s)	1007, 1574, 1864, 2091
AfiI	CCNNNNNNNGG	9 cut(s)	862, 1015, 1394, 1674, 1675, 1823, 2044, 2246, 2323
AflIII	ACRYGT	3 cut(s)	1023, 1769, 1904
AjiI	CACGTC	1 cut(s)	1394
AleI	CACNNNNGTG	1 cut(s)	2106
AloI	GAACNNNNNNTCC	2 cut(s)	1235, 1267
Alw21I	GWGCWC	4 cut(s)	554, 639, 740, 1033
Alw26I	GTCTC	5 cut(s)	151, 438, 520, 592, 2115
AlwI	GGATC	1 cut(s)	2412
AlwNI	CAGNNNCTG	1 cut(s)	1655
ApeKI	GCWGC	9 cut(s)	11, 138, 1102, 1423, 1605, 1782, 1986, 2198, 2222
ApoI	RAATTY	3 cut(s)	1051, 1714, 1733
ArsI	GACNNNNNNTTYG	4 cut(s)	560, 592, 1612, 1644
Asp718I	GGTACC	1 cut(s)	1005
AspLEI	GCGC	3 cut(s)	16, 122, 790
AsuC2I	CCSGG	3 cut(s)	600, 815, 992
AsuII	TTCGAA	1 cut(s)	200
AvaII	GGWCC	7 cut(s)	24, 475, 561, 811, 988, 1841, 2156
AxyI	CCTNAGG	1 cut(s)	1518
BaeI	ACNNNNGTAYC	2 cut(s)	1012, 1045
BalI	TGGCCA	2 cut(s)	650, 1803
BanI	GGYRCC	2 cut(s)	704, 1005
BanII	GRGCYC	1 cut(s)	639
BbrPI	CACGTG	3 cut(s)	741, 1772, 1907
BbsI	GAAGAC	1 cut(s)	695
Bbv12I	GWGCWC	4 cut(s)	554, 639, 740, 1033
BbvI	GCAGC	8 cut(s)	125, 1114, 1435, 1592, 1794, 1998, 2185, 2234
BccI	CCATC	7 cut(s)	341, 400, 778, 809, 832, 1559, 1832
BceAI	ACGGC	2 cut(s)	718, 880
BcgI	CGANNNNNNTGC	4 cut(s)	965, 999, 2269, 2303
BciVI	GTATCC	2 cut(s)	1013, 2229
BcnI	CCSGG	3 cut(s)	600, 815, 992
BcoDI	GTCTC	5 cut(s)	151, 438, 520, 592, 2115
BfaI	CTAG	3 cut(s)	966, 1343, 2381
BfmI	CTRYAG	3 cut(s)	99, 1421, 1935
BfuI	GTATCC	2 cut(s)	1013, 2229
BglII	AGATCT	1 cut(s)	522
BlpI	GCTNAGC	1 cut(s)	2226
Bme18I	GGWCC	7 cut(s)	24, 475, 561, 811, 988, 1841, 2156
BmgBI	CACGTC	1 cut(s)	1394
BmiI	GGNNCC	7 cut(s)	562, 706, 813, 854, 912, 989, 1007
BmrI	ACTGGG	1 cut(s)	1812
BmsI	GCATC	2 cut(s)	1561, 2128
BmuI	ACTGGG	1 cut(s)	1812
BpiI	GAAGAC	1 cut(s)	695
BplI	GAGNNNNNCTC	2 cut(s)	431, 463
BpmI	CTGGAG	1 cut(s)	611
Bpu10I	CCTNAGC	1 cut(s)	2419
Bpu1102I	GCTNAGC	1 cut(s)	2226
Bpu14I	TTCGAA	1 cut(s)	200
BpuEI	CTTGAG	4 cut(s)	286, 1017, 1562, 2234
BpuMI	CCSGG	3 cut(s)	600, 815, 992
BsaAI	YACGTR	3 cut(s)	741, 1772, 1907
BsaHI	GRCGYC	3 cut(s)	144, 237, 714
BsaI	GGTCTC	3 cut(s)	520, 592, 2115
BsaWI	WCCGGW	3 cut(s)	762, 913, 1291
BsaXI	ACNNNNNCTCC	4 cut(s)	500, 530, 1235, 1265
Bsc4I	CCNNNNNNNGG	9 cut(s)	862, 1015, 1394, 1674, 1675, 1823, 2044, 2246, 2323
Bse118I	RCCGGY	3 cut(s)	317, 460, 907
Bse1I	ACTGG	4 cut(s)	1631, 1645, 1818, 2240
Bse21I	CCTNAGG	1 cut(s)	1518
Bse3DI	GCAATG	1 cut(s)	2287
BseGI	GGATG	5 cut(s)	1300, 1528, 1552, 1570, 2308
BseLI	CCNNNNNNNGG	9 cut(s)	862, 1015, 1394, 1674, 1675, 1823, 2044, 2246, 2323
BseMI	GCAATG	1 cut(s)	2287
BseMII	CTCAG	9 cut(s)	449, 505, 723, 1169, 1229, 1532, 2217, 2427, 2433
BseNI	ACTGG	4 cut(s)	1631, 1645, 1818, 2240
BseXI	GCAGC	8 cut(s)	125, 1114, 1435, 1592, 1794, 1998, 2185, 2234
BseYI	CCCAGC	1 cut(s)	621
BsgI	GTGCAG	1 cut(s)	938
Bsh1236I	CGCG	3 cut(s)	120, 1025, 1599
Bsh1285I	CGRYCG	2 cut(s)	538, 1292
BshNI	GGYRCC	2 cut(s)	704, 1005
BsiEI	CGRYCG	2 cut(s)	538, 1292
BsiHKAI	GWGCWC	4 cut(s)	554, 639, 740, 1033
BsiSI	CCGG	9 cut(s)	318, 461, 600, 763, 815, 908, 914, 991, 1292
BslFI	GGGAC	6 cut(s)	458, 574, 1001, 1447, 1649, 2263
BslI	CCNNNNNNNGG	9 cut(s)	862, 1015, 1394, 1674, 1675, 1823, 2044, 2246, 2323
BsmAI	GTCTC	5 cut(s)	151, 438, 520, 592, 2115
BsmBI	CGTCTC	1 cut(s)	151
BsmFI	GGGAC	6 cut(s)	458, 574, 1001, 1447, 1649, 2263
BsmI	GAATGC	1 cut(s)	421
Bso31I	GGTCTC	3 cut(s)	520, 592, 2115
Bsp119I	TTCGAA	1 cut(s)	200
Bsp1286I	GDGCHC	4 cut(s)	554, 639, 740, 1033
Bsp1407I	TGTACA	1 cut(s)	1572
Bsp143I	GATC	7 cut(s)	522, 535, 676, 1525, 1873, 2284, 2404
Bsp1720I	GCTNAGC	1 cut(s)	2226
BspCNI	CTCAG	9 cut(s)	448, 504, 724, 1168, 1230, 1531, 2218, 2426, 2432
BspFNI	CGCG	3 cut(s)	120, 1025, 1599
BspLI	GGNNCC	7 cut(s)	562, 706, 813, 854, 912, 989, 1007
BspMAI	CTGCAG	1 cut(s)	1425
BspPI	GGATC	1 cut(s)	2412
BspT104I	TTCGAA	1 cut(s)	200
BspT107I	GGYRCC	2 cut(s)	704, 1005
BspTNI	GGTCTC	3 cut(s)	520, 592, 2115
BsrBI	CCGCTC	3 cut(s)	357, 1688, 2390
BsrDI	GCAATG	1 cut(s)	2287
BsrFI	RCCGGY	3 cut(s)	317, 460, 907
BsrGI	TGTACA	1 cut(s)	1572
BsrI	ACTGG	4 cut(s)	1631, 1645, 1818, 2240
BssAI	RCCGGY	3 cut(s)	317, 460, 907
BssMI	GATC	7 cut(s)	522, 535, 676, 1525, 1873, 2284, 2404
BssNAI	GTATAC	1 cut(s)	2329
BssNI	GRCGYC	3 cut(s)	144, 237, 714
BssT1I	CCWWGG	3 cut(s)	615, 1969, 1975
Bst1107I	GTATAC	1 cut(s)	2329
Bst4CI	ACNGT	7 cut(s)	229, 247, 432, 556, 1438, 1616, 1893
Bst6I	CTCTTC	3 cut(s)	202, 1166, 1752
BstACI	GRCGYC	3 cut(s)	144, 237, 714
BstAUI	TGTACA	1 cut(s)	1572
BstBAI	YACGTR	3 cut(s)	741, 1772, 1907
BstBI	TTCGAA	1 cut(s)	200
BstC8I	GCNNGC	7 cut(s)	235, 319, 462, 909, 1690, 2065, 2220
BstEII	GGTNACC	1 cut(s)	2312
BstF5I	GGATG	5 cut(s)	1300, 1528, 1552, 1570, 2308
BstFNI	CGCG	3 cut(s)	120, 1025, 1599
BstHHI	GCGC	3 cut(s)	16, 122, 790
BstKTI	GATC	7 cut(s)	525, 538, 679, 1528, 1876, 2287, 2407
BstMAI	GTCTC	5 cut(s)	151, 438, 520, 592, 2115
BstMBI	GATC	7 cut(s)	522, 535, 676, 1525, 1873, 2284, 2404
BstMCI	CGRYCG	2 cut(s)	538, 1292
BstNSI	RCATGY	1 cut(s)	2258
BstPI	GGTNACC	1 cut(s)	2312
BstSFI	CTRYAG	3 cut(s)	99, 1421, 1935
BstUI	CGCG	3 cut(s)	120, 1025, 1599
BstV1I	GCAGC	8 cut(s)	125, 1114, 1435, 1592, 1794, 1998, 2185, 2234
BstV2I	GAAGAC	1 cut(s)	695
BstX2I	RGATCY	1 cut(s)	522
BstXI	CCANNNNNNTGG	3 cut(s)	472, 808, 1976
BstYI	RGATCY	1 cut(s)	522
BstZ17I	GTATAC	1 cut(s)	2329
Bsu36I	CCTNAGG	1 cut(s)	1518
BsuI	GTATCC	2 cut(s)	1013, 2229
BtrI	CACGTC	1 cut(s)	1394
BtsCI	GGATG	5 cut(s)	1300, 1528, 1552, 1570, 2308
BtsI	GCAGTG	1 cut(s)	1418
BtsIMutI	CAGTG	5 cut(s)	499, 729, 1418, 1825, 1837
Cac8I	GCNNGC	7 cut(s)	235, 319, 462, 909, 1690, 2065, 2220
CaiI	CAGNNNCTG	1 cut(s)	1655
CfoI	GCGC	3 cut(s)	16, 122, 790
Cfr10I	RCCGGY	3 cut(s)	317, 460, 907
CseI	GACGC	4 cut(s)	133, 226, 703, 2260
CsiI	ACCWGGT	1 cut(s)	1198
Csp6I	GTAC	4 cut(s)	1006, 1573, 1863, 2090
CspCI	CAANNNNNGTGG	2 cut(s)	475, 510
CviAII	CATG	8 cut(s)	820, 937, 1693, 2096, 2182, 2255, 2276, 2345
CviQI	GTAC	4 cut(s)	1006, 1573, 1863, 2090
DpnI	GATC	7 cut(s)	524, 537, 678, 1527, 1875, 2286, 2406
DpnII	GATC	7 cut(s)	522, 535, 676, 1525, 1873, 2284, 2404
EaeI	YGGCCR	4 cut(s)	6, 462, 648, 1801
Eam1104I	CTCTTC	3 cut(s)	202, 1166, 1752
EarI	CTCTTC	3 cut(s)	202, 1166, 1752
EciI	GGCGGA	8 cut(s)	82, 304, 336, 342, 351, 387, 618, 767
Ecl136II	GAGCTC	1 cut(s)	637
Eco130I	CCWWGG	3 cut(s)	615, 1969, 1975
Eco147I	AGGCCT	1 cut(s)	1974
Eco24I	GRGCYC	1 cut(s)	639
Eco31I	GGTCTC	3 cut(s)	520, 592, 2115
Eco32I	GATATC	1 cut(s)	1096
Eco47I	GGWCC	7 cut(s)	24, 475, 561, 811, 988, 1841, 2156
Eco53kI	GAGCTC	1 cut(s)	637
Eco57I	CTGAAG	1 cut(s)	2063
Eco72I	CACGTG	3 cut(s)	741, 1772, 1907
Eco81I	CCTNAGG	1 cut(s)	1518
Eco91I	GGTNACC	1 cut(s)	2312
EcoICRI	GAGCTC	1 cut(s)	637
EcoO109I	RGGNCCY	1 cut(s)	24
EcoO65I	GGTNACC	1 cut(s)	2312
EcoRV	GATATC	1 cut(s)	1096
EcoT14I	CCWWGG	3 cut(s)	615, 1969, 1975
EcoT22I	ATGCAT	2 cut(s)	2143, 2266
EcoT38I	GRGCYC	1 cut(s)	639
ErhI	CCWWGG	3 cut(s)	615, 1969, 1975
Esp3I	CGTCTC	1 cut(s)	151
FaeI	CATG	8 cut(s)	823, 940, 1696, 2099, 2185, 2258, 2279, 2348
FaqI	GGGAC	6 cut(s)	458, 574, 1001, 1447, 1649, 2263
FatI	CATG	8 cut(s)	819, 936, 1692, 2095, 2181, 2254, 2275, 2344
FauI	CCCGC	3 cut(s)	125, 1589, 1681
FauNDI	CATATG	1 cut(s)	2356
FblI	GTMKAC	2 cut(s)	609, 2328
FokI	GGATG	5 cut(s)	1307, 1535, 1539, 1577, 2315
FriOI	GRGCYC	1 cut(s)	639
FspBI	CTAG	3 cut(s)	966, 1343, 2381
GlaI	GCGC	3 cut(s)	15, 121, 789
GsaI	CCCAGC	1 cut(s)	625
GsuI	CTGGAG	1 cut(s)	611
HapII	CCGG	9 cut(s)	318, 461, 600, 763, 815, 908, 914, 991, 1292
HgaI	GACGC	4 cut(s)	133, 226, 703, 2260
HhaI	GCGC	3 cut(s)	16, 122, 790
Hin1I	GRCGYC	3 cut(s)	144, 237, 714
Hin1II	CATG	8 cut(s)	823, 940, 1696, 2099, 2185, 2258, 2279, 2348
Hin6I	GCGC	3 cut(s)	14, 120, 788
HinP1I	GCGC	3 cut(s)	14, 120, 788
HincII	GTYRAC	2 cut(s)	1681, 1966
HindII	GTYRAC	2 cut(s)	1681, 1966
HindIII	AAGCTT	3 cut(s)	1127, 1331, 1538
HinfI	GANTC	9 cut(s)	202, 446, 569, 606, 982, 1159, 1282, 1627, 1827
HpaII	CCGG	9 cut(s)	318, 461, 600, 763, 815, 908, 914, 991, 1292
Hpy166II	GTNNAC	5 cut(s)	610, 1573, 1681, 1966, 2329
Hpy188I	TCNGA	9 cut(s)	290, 520, 540, 999, 1158, 1196, 1239, 2291, 2438
Hpy8I	GTNNAC	5 cut(s)	610, 1573, 1681, 1966, 2329
Hpy99I	CGWCG	5 cut(s)	221, 233, 425, 560, 704
HpyCH4III	ACNGT	7 cut(s)	229, 247, 432, 556, 1438, 1616, 1893
HpyCH4IV	ACGT	6 cut(s)	216, 740, 774, 1393, 1771, 1906
HpyCH4V	TGCA	8 cut(s)	919, 976, 1423, 1552, 2141, 2222, 2264, 2270
HpySE526I	ACGT	6 cut(s)	216, 740, 774, 1393, 1771, 1906
Hsp92I	GRCGYC	3 cut(s)	144, 237, 714
Hsp92II	CATG	8 cut(s)	823, 940, 1696, 2099, 2185, 2258, 2279, 2348
HspAI	GCGC	3 cut(s)	14, 120, 788
KpnI	GGTACC	1 cut(s)	1009
KroI	GCCGGC	3 cut(s)	317, 460, 907
KroNI	GCCGGC	3 cut(s)	319, 462, 909
Kzo9I	GATC	7 cut(s)	522, 535, 676, 1525, 1873, 2284, 2404
LmnI	GCTCC	5 cut(s)	549, 630, 916, 1197, 1377
Lsp1109I	GCAGC	8 cut(s)	125, 1114, 1435, 1592, 1794, 1998, 2185, 2234
LweI	GCATC	2 cut(s)	1561, 2128
MabI	ACCWGGT	1 cut(s)	1198
MaeI	CTAG	3 cut(s)	966, 1343, 2381
MaeII	ACGT	6 cut(s)	216, 740, 774, 1393, 1771, 1906
MaeIII	GTNAC	8 cut(s)	238, 247, 715, 1438, 1492, 2099, 2174, 2312
MalI	GATC	7 cut(s)	524, 537, 678, 1527, 1875, 2286, 2406
MbiI	CCGCTC	3 cut(s)	357, 1688, 2390
MboI	GATC	7 cut(s)	522, 535, 676, 1525, 1873, 2284, 2404
MfeI	CAATTG	1 cut(s)	652
MflI	RGATCY	1 cut(s)	522
MhlI	GDGCHC	4 cut(s)	554, 639, 740, 1033
MlsI	TGGCCA	2 cut(s)	650, 1803
MluI	ACGCGT	1 cut(s)	1023
MluNI	TGGCCA	2 cut(s)	650, 1803
MlyI	GAGTC	5 cut(s)	440, 563, 615, 1636, 1836
MmeI	TCCRAC	3 cut(s)	1219, 1871, 2098
Mox20I	TGGCCA	2 cut(s)	650, 1803
Mph1103I	ATGCAT	2 cut(s)	2143, 2266
MreI	CGCCGGCG	1 cut(s)	317
MroNI	GCCGGC	3 cut(s)	317, 460, 907
MscI	TGGCCA	2 cut(s)	650, 1803
MseI	TTAA	4 cut(s)	1212, 1335, 1536, 2024
MslI	CAYNNNNRTG	5 cut(s)	806, 1277, 2106, 2259, 2280
Msp20I	TGGCCA	2 cut(s)	650, 1803
MspA1I	CMGCKG	4 cut(s)	11, 1105, 2041, 2225
MspI	CCGG	9 cut(s)	318, 461, 600, 763, 815, 908, 914, 991, 1292
MunI	CAATTG	1 cut(s)	652
Mva1269I	GAATGC	1 cut(s)	421
MvnI	CGCG	3 cut(s)	120, 1025, 1599
NaeI	GCCGGC	3 cut(s)	319, 462, 909
NciI	CCSGG	3 cut(s)	600, 815, 992
NdeI	CATATG	1 cut(s)	2356
NdeII	GATC	7 cut(s)	522, 535, 676, 1525, 1873, 2284, 2404
NgoMIV	GCCGGC	3 cut(s)	317, 460, 907
NlaIII	CATG	8 cut(s)	823, 940, 1696, 2099, 2185, 2258, 2279, 2348
NlaIV	GGNNCC	7 cut(s)	562, 706, 813, 854, 912, 989, 1007
NmeAIII	GCCGAG	1 cut(s)	690
NmuCI	GTSAC	4 cut(s)	238, 247, 715, 2099
NsiI	ATGCAT	2 cut(s)	2143, 2266
NspI	RCATGY	1 cut(s)	2258
NspV	TTCGAA	1 cut(s)	200
OliI	CACNNNNGTG	1 cut(s)	2106
PceI	AGGCCT	1 cut(s)	1974
PcsI	WCGNNNNNNNCGW	2 cut(s)	225, 672
PctI	GAATGC	1 cut(s)	421
PdiI	GCCGGC	3 cut(s)	319, 462, 909
PfeI	GAWTC	4 cut(s)	202, 982, 1159, 1282
PfoI	TCCNGGA	1 cut(s)	1387
Ple19I	CGATCG	1 cut(s)	538
PleI	GAGTC	5 cut(s)	440, 563, 614, 1635, 1835
PmaCI	CACGTG	3 cut(s)	741, 1772, 1907
PmlI	CACGTG	3 cut(s)	741, 1772, 1907
PpsI	GAGTC	5 cut(s)	440, 563, 614, 1635, 1835
Ppu21I	YACGTR	3 cut(s)	741, 1772, 1907
PpuMI	RGGWCCY	1 cut(s)	24
Psp124BI	GAGCTC	1 cut(s)	639
Psp5II	RGGWCCY	1 cut(s)	24
PspCI	CACGTG	3 cut(s)	741, 1772, 1907
PspEI	GGTNACC	1 cut(s)	2312
PspFI	CCCAGC	1 cut(s)	621
PspN4I	GGNNCC	7 cut(s)	562, 706, 813, 854, 912, 989, 1007
PspPPI	RGGWCCY	1 cut(s)	24
PstI	CTGCAG	1 cut(s)	1425
PstNI	CAGNNNCTG	1 cut(s)	1655
PsuI	RGATCY	1 cut(s)	522
PvuI	CGATCG	1 cut(s)	538
PvuII	CAGCTG	3 cut(s)	1105, 2041, 2225
RsaI	GTAC	4 cut(s)	1007, 1574, 1864, 2091
RsaNI	GTAC	4 cut(s)	1006, 1573, 1863, 2090
RseI	CAYNNNNRTG	5 cut(s)	806, 1277, 2106, 2259, 2280
SacI	GAGCTC	1 cut(s)	639
SaqAI	TTAA	4 cut(s)	1212, 1335, 1536, 2024
Sau3AI	GATC	7 cut(s)	522, 535, 676, 1525, 1873, 2284, 2404
SchI	GAGTC	5 cut(s)	440, 563, 615, 1636, 1836
SduI	GDGCHC	4 cut(s)	554, 639, 740, 1033
SexAI	ACCWGGT	1 cut(s)	1198
SfaNI	GCATC	2 cut(s)	1561, 2128
SfcI	CTRYAG	3 cut(s)	99, 1421, 1935
SfuI	TTCGAA	1 cut(s)	200
SgrAI	CRCCGGYG	1 cut(s)	317
SinI	GGWCC	7 cut(s)	24, 475, 561, 811, 988, 1841, 2156
SmiMI	CAYNNNNRTG	5 cut(s)	806, 1277, 2106, 2259, 2280
SmlI	CTYRAG	4 cut(s)	265, 1032, 1541, 2213
SmoI	CTYRAG	4 cut(s)	265, 1032, 1541, 2213
SseBI	AGGCCT	1 cut(s)	1974
SspMI	CTAG	3 cut(s)	966, 1343, 2381
SstI	GAGCTC	1 cut(s)	639
StuI	AGGCCT	1 cut(s)	1974
StyI	CCWWGG	3 cut(s)	615, 1969, 1975
TaaI	ACNGT	7 cut(s)	229, 247, 432, 556, 1438, 1616, 1893
TaiI	ACGT	6 cut(s)	219, 743, 777, 1396, 1774, 1909
TaqI	TCGA	9 cut(s)	200, 353, 534, 639, 666, 675, 804, 1453, 1618
TaqII	GACCGA	2 cut(s)	578, 1698
TatI	WGTACW	2 cut(s)	1572, 2089
TfiI	GAWTC	4 cut(s)	202, 982, 1159, 1282
Tru1I	TTAA	4 cut(s)	1212, 1335, 1536, 2024
Tru9I	TTAA	4 cut(s)	1212, 1335, 1536, 2024
TscAI	CASTG	5 cut(s)	499, 736, 1425, 1825, 1837
TseFI	GTSAC	4 cut(s)	238, 247, 715, 2099
TseI	GCWGC	9 cut(s)	11, 138, 1102, 1423, 1605, 1782, 1986, 2198, 2222
Tsp45I	GTSAC	4 cut(s)	238, 247, 715, 2099
TspDTI	ATGAA	5 cut(s)	1320, 1674, 1709, 1791, 2084
TspGWI	ACGGA	3 cut(s)	468, 1385, 2248
TspRI	CASTG	5 cut(s)	499, 736, 1425, 1825, 1837
VpaK11BI	GGWCC	7 cut(s)	24, 475, 561, 811, 988, 1841, 2156
XapI	RAATTY	3 cut(s)	1051, 1714, 1733
XceI	RCATGY	1 cut(s)	2258
XmiI	GTMKAC	2 cut(s)	609, 2328
XspI	CTAG	3 cut(s)	966, 1343, 2381
Zsp2I	ATGCAT	2 cut(s)	2143, 2266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.