Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0004162

Physical Location & Seq

Genomic Coordinates Forward (+)

49983099 .. 49988496

Gene Structure 5398 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG382000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2433 bp

ATGTTCGCAGCGTCCACCAGTATCTATACCCCCACCACCATCGCTCTCCTCCCTCCCTCCTCCGCTGATCGCAAATTAGCTTCTTTATCCACCGCCACCACCAACAACAGCACGCGCACGCGCCGCCGTCCAATCACCAAATGCCGCTTGTCCTCCTCCTCCTCGCCCCTTTCTCTAAACCCTAAACCCTCCTCTTCCAACCACCTCCTCAAAAGCCTCGCCAAAACATTGGCCGGCGCCACCGCCGTCACCCTCATCCTAAACCTAACCAATTTCCCCGCCTTCATCGGCGGAGGCGGAAGCGGAGGAGGTCATGGTTCCAATGGCGGCGGCGGCGGCGGAGGAGGGTTTTGGAGGAGGCTGTTTCGCCTGCATGCCGCGAAAGCCGACGAGCCGAACGAGTCGTGGGACTCTCACGGCTTGCCGGCCGACATTGTGGTCCAGCTCAGCAGGCTCAGCGGCTTCAAGAAGTACAAGGTCTCGGAGTCGGAGGTCTTGTTCTTCGACCGGAAGCGGTGGAGCACCGTCGGCGGCGACGACTCCATCTCCGACATGCTGTCCCTCAGGCCCGGCGGCGTCTACACCAAGGCCGAGCTCGAGAACGAGCTCCAATCCCTGGCCAATTGCGGAATGTTCGAGAAGGTCGACTTCGAAGGCAAGACCAAGCCGGACGGCACCCTCGCCGTCACCGTCTCGTTCACGGAGAGCACGTGGCAGGCGGCGGAGAGGTTCCGGTGCATTAACGTGGGCCTGATGGCGCAGCCCAAGCCCATTGAGATGGACCCGGACATGACCGAGAGGGAGAAGCTCCAGTATTTCAGGAACCAGGAGAGGGATTACAAGAGGAGGATGGAGAGGGCCAGGCCGTGTTTGCTGCCGGCTGCGGTGCAGAGGGAGGTGTTGCAGATGGTGAGAGAACATGGGAAGGTGAGTGCTAGGGTGTTGCAGAAGATTCAGGCCCGGGTTCTCAAGTGGTACCAAGATGAGGGGTATCTGTGTGCCAATGTTGTCAACTTTGGGAATTTGAATACAAAGGAGGTTGTGTGTGAGGTGGTGGAGGGCGATATTACTCGGCTGGTTATTCAGTTCCGGGATAAGCTTGGCAATGTTGTAGAGGGGAAGACTCAGAGTCTTGTGGTCAAGAGAGAATTGCCCAAACAGCTTCGACCAGGTAATGCGTTTAACATAGAAGCAGGGAAACAAGCTCTGAGGAACTTAACCTCCCTGGGATTGTTTTCAAACATTGAAGTGAATCCAGTACCGGACGAGAAGAATGAAGGGGGGATAGTTGTTGAAATAAATCTTAAAGAACAAGAGCACAAGACTGCTGAAGTAAGCACGGAATGGAACATTGTTCGTGGACATGGAGGCTATCCCACTTTGGCTTCACTGCTACCCGGTGGAACTGTTACATTTCAACATCGGAATATCAACGGATTGAATAGGTCTCTTATTGGTTCAGTAAGCAGTAGCAACCTTTACAACCCACAGCTTCAGGATGATCTTGAATTTAAGCTTGAGTACATCCATCCATATCTGGATGGTCTGGACAATCCCTGCGATCGCACTCTCCGGGTAAGCTGCTTTAATGGTCGAAAATTGAGTCCAGTCTTCACTGGTGGGCCAGGGGATGATGAAGTTCCCCCAGTATGGGTTGATCGAGCTGGCATGAAGGCTAATATAACAGAGAATTTGAGCCGTCAGAGCAAATTCACTTATGGTCTTGTGATGGAAGAGATAACCACACGTGATGAACAAAATCATATATGTTCAAATGGCCAAAGAGTGCTGCCCAGTGGAGGTGTCAGTGAAGATGGACCTCCAACAACTCTCAGCGGTACTGGCATTGACCATGTGGCATTTTTACAGTCAAATATCACACATGACAACACCAAGTTTGTGAATGGAACCTTAGTTGGTGAGAGGAATGTGTTTCAGGTTGACCAAGGCCTTGGCATTGGCAGCAAGTTTCCATTCTTCAACCGCCACCAGTTATCATTAACAAGATTTTTCCAGCTGAAGGAAGTGGAGGAAGGTGCTGGCAAACCACCACCACCTGTTCTTGTACTTCATGGTCACTATGGTGGCTGTGTTGGAGACCTTCCAAGTTATGATGCATTTACCCTTGGGGGTCCATATTCTGTGAGAGGTTACAACATGGGTGAGATAGGCGCCGCTAGACATATCCTCGAGCTTGCAGCTGAGCTACGGATACCGGTTAAAGGAAAAAATGTATATGCATTTGTAGAACATGGCAATGATCTCGGAAGTTCGAAGGATGTCAAGGGTAACCCAACAGAGGTATACAGGCGAGTGGGTCATGGGTCATCATATGGTGTTGGTGTCAAGTTAGGTCCAGTAAGAGTGGAATATGTTGTGGATCACAACTCTGGCACAGGTTTAACATTCTTCCGATTTGGTGACCGATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006605 GO:0006810 GO:0006886 GO:0006996 GO:0007275 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009653 GO:0009657 GO:0009658 GO:0009662 GO:0009707 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009941 GO:0009987 GO:0010006 GO:0010033 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019867 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031350 GO:0031351 GO:0031354 GO:0031355 GO:0031358 GO:0031359 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0048598 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0061927 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072596 GO:0072598 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bac_surface_Ag

Protein Analysis

810

Amino Acids

88.79

Weight (kDa)

8.68

Isoelectric Point (pI)

41.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
POTRA1_3_Toc75	PF25282	142 - 235	1e-28	Toc75-like, POTRA domain
POTRA2_Toc75	PF25280	244 - 355	1.3e-55	Toc75-like, second POTRA domain
POTRA1_3_Toc75	PF25282	356 - 437	3.2e-25	Toc75-like, POTRA domain
Omp85	PF01103	476 - 791	1.2e-17	Omp85 superfamily domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004162)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46740 AT4G09080 AT4G09080 AT4G09080
fragaria_vesca	FvH4_3g28760 FvH4_3g28760 FvH4_3g28760 FvH4_5g29410
malus_domestica	MD03G1086500.v1.1 MD11G1095600.v1.1
prunus_persica	Prupe.6G071100_v2.0.a1
pyrus_communis	pycom03g06860 pycom11g08100 pycom11g08110
rosa_chinensis	RchiOBHm_Chr5g0052291 RchiOBHm_Chr7g0222311
rosa_laevigata	RLG00000002071 RLG00000034828
rosa_multiflora	Rmu_sc0007069.1_g000009 Rmu_sc0028377.1_g000001 Rmu_sc0032875.1_g000001 Rmu_sc0032876.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028120 Rroxscaffold_3G00237120
rosa_rugosa	Rorug05G0273100 Rorug07G0207600
rosa_samantha	Rh5CG382000 Rh5DG371900 Rh7AG349900 Rh7DG346100
rosa_wichuraiana	Rw5G032630 Rw5G032670 Rw7G029530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	437
Acc65I	GGTACC	1 cut(s)	975
AccB1I	GGYRCC	4 cut(s)	236, 674, 975, 2171
AccB7I	CCANNNNNTGG	1 cut(s)	616
AccI	GTMKAC	3 cut(s)	579, 645, 2304
AccII	CGCG	3 cut(s)	115, 121, 380
AclWI	GGATC	1 cut(s)	2388
AcoI	YGGCCR	4 cut(s)	231, 426, 618, 1777
AcsI	RAATTY	4 cut(s)	1021, 1508, 1690, 1709
AcuI	CTGAAG	3 cut(s)	1350, 1478, 2039
AcvI	CACGTG	2 cut(s)	711, 1748
AcyI	GRCGYC	3 cut(s)	237, 576, 2172
AfaI	GTAC	6 cut(s)	473, 977, 1260, 1523, 1840, 2067
AfiI	CCNNNNNNNGG	9 cut(s)	616, 832, 985, 1650, 1651, 1799, 2020, 2222, 2299
AflIII	ACRYGT	1 cut(s)	1745
AgeI	ACCGGT	1 cut(s)	2215
AhdI	GACNNNNNGTC	2 cut(s)	556, 1128
AjnI	CCWGG	6 cut(s)	615, 825, 860, 1168, 1224, 1624
AleI	CACNNNNGTG	1 cut(s)	2082
AloI	GAACNNNNNNTCC	4 cut(s)	482, 514, 1205, 1237
Alw21I	GWGCWC	5 cut(s)	524, 597, 609, 710, 1320
Alw26I	GTCTC	4 cut(s)	484, 697, 1452, 2091
AlwI	GGATC	1 cut(s)	2388
Ama87I	CYCGRG	3 cut(s)	596, 960, 2189
ApeKI	GCWGC	8 cut(s)	8, 760, 874, 881, 1581, 1789, 1962, 2198
ApoI	RAATTY	4 cut(s)	1021, 1508, 1690, 1709
ArsI	GACNNNNNNTTYG	2 cut(s)	1588, 1620
AsiGI	ACCGGT	1 cut(s)	2215
AsiSI	GCGATCGC	1 cut(s)	1564
Asp718I	GGTACC	1 cut(s)	975
AspLEI	GCGC	5 cut(s)	117, 123, 239, 760, 2174
AsuC2I	CCSGG	7 cut(s)	570, 785, 961, 962, 1091, 1398, 1574
AsuHPI	GGTGA	8 cut(s)	127, 241, 679, 922, 940, 1931, 2174, 2432
AsuII	TTCGAA	2 cut(s)	651, 2273
AvaI	CYCGRG	3 cut(s)	596, 960, 2189
AvaII	GGWCC	5 cut(s)	439, 781, 1817, 2132, 2354
AxyI	CCTNAGG	1 cut(s)	563
BalI	TGGCCA	2 cut(s)	620, 1779
BanI	GGYRCC	4 cut(s)	236, 674, 975, 2171
BanII	GRGCYC	2 cut(s)	597, 609
BbrPI	CACGTG	2 cut(s)	711, 1748
BbsI	GAAGAC	2 cut(s)	1127, 1603
Bbv12I	GWGCWC	5 cut(s)	524, 597, 609, 710, 1320
BbvI	GCAGC	8 cut(s)	20, 772, 861, 868, 1568, 1776, 1974, 2210
BceAI	ACGGC	7 cut(s)	111, 230, 433, 668, 688, 850, 1683
BcgI	CGANNNNNNTGC	2 cut(s)	2245, 2279
BciT130I	CCWGG	6 cut(s)	617, 827, 862, 1170, 1226, 1626
BciVI	GTATCC	1 cut(s)	2205
BcnI	CCSGG	7 cut(s)	570, 785, 961, 962, 1091, 1398, 1574
BcoDI	GTCTC	4 cut(s)	484, 697, 1452, 2091
BfaI	CTAG	2 cut(s)	936, 2178
BfoI	RGCGCY	2 cut(s)	240, 2175
BfuI	GTATCC	1 cut(s)	2205
BlpI	GCTNAGC	3 cut(s)	446, 455, 2202
Bme18I	GGWCC	5 cut(s)	439, 781, 1817, 2132, 2354
BmeRI	GACNNNNNGTC	2 cut(s)	556, 1128
BmeT110I	CYCGRG	3 cut(s)	596, 960, 2189
BmrI	ACTGGG	2 cut(s)	1640, 1788
BmsI	GCATC	1 cut(s)	2104
BmuI	ACTGGG	2 cut(s)	1640, 1788
BpiI	GAAGAC	2 cut(s)	1127, 1603
BpmI	CTGGAG	1 cut(s)	794
Bpu1102I	GCTNAGC	3 cut(s)	446, 455, 2202
Bpu14I	TTCGAA	2 cut(s)	651, 2273
BpuEI	CTTGAG	2 cut(s)	953, 1538
BpuMI	CCSGG	7 cut(s)	570, 785, 961, 962, 1091, 1398, 1574
BsaAI	YACGTR	2 cut(s)	711, 1748
BsaHI	GRCGYC	3 cut(s)	237, 576, 2172
BsaI	GGTCTC	3 cut(s)	484, 1452, 2091
BsaJI	CCNNGG	9 cut(s)	585, 615, 960, 1224, 1225, 1625, 1945, 1951, 2125
BsaWI	WCCGGW	4 cut(s)	507, 732, 1261, 2215
Bsc4I	CCNNNNNNNGG	9 cut(s)	616, 832, 985, 1650, 1651, 1799, 2020, 2222, 2299
Bse118I	RCCGGY	4 cut(s)	233, 424, 877, 2215
Bse21I	CCTNAGG	1 cut(s)	563
Bse3DI	GCAATG	2 cut(s)	1111, 2263
BseBI	CCWGG	6 cut(s)	617, 827, 862, 1170, 1226, 1626
BseDI	CCNNGG	9 cut(s)	585, 615, 960, 1224, 1225, 1625, 1945, 1951, 2125
BseGI	GGATG	8 cut(s)	255, 855, 1504, 1524, 1528, 1546, 1636, 2284
BseLI	CCNNNNNNNGG	9 cut(s)	616, 832, 985, 1650, 1651, 1799, 2020, 2222, 2299
BseMI	GCAATG	2 cut(s)	1111, 2263
BseMII	CTCAG	7 cut(s)	460, 469, 577, 1139, 1199, 1846, 2193
BseX3I	CGGCCG	1 cut(s)	426
BseXI	GCAGC	8 cut(s)	20, 772, 861, 868, 1568, 1776, 1974, 2210
BsgI	GTGCAG	1 cut(s)	908
Bsh1236I	CGCG	3 cut(s)	115, 121, 380
Bsh1285I	CGRYCG	3 cut(s)	429, 508, 1564
BshNI	GGYRCC	4 cut(s)	236, 674, 975, 2171
BshTI	ACCGGT	1 cut(s)	2215
BsiEI	CGRYCG	3 cut(s)	429, 508, 1564
BsiHKAI	GWGCWC	5 cut(s)	524, 597, 609, 710, 1320
BsiHKCI	CYCGRG	3 cut(s)	596, 960, 2189
BslFI	GGGAC	2 cut(s)	422, 544
BslI	CCNNNNNNNGG	9 cut(s)	616, 832, 985, 1650, 1651, 1799, 2020, 2222, 2299
BsmAI	GTCTC	4 cut(s)	484, 697, 1452, 2091
BsmBI	CGTCTC	1 cut(s)	697
BsmFI	GGGAC	2 cut(s)	422, 544
Bso31I	GGTCTC	3 cut(s)	484, 1452, 2091
BsoBI	CYCGRG	3 cut(s)	596, 960, 2189
Bsp119I	TTCGAA	2 cut(s)	651, 2273
Bsp1286I	GDGCHC	5 cut(s)	524, 597, 609, 710, 1320
Bsp143I	GATC	6 cut(s)	67, 1501, 1561, 1657, 2260, 2380
Bsp1720I	GCTNAGC	3 cut(s)	446, 455, 2202
BspCNI	CTCAG	7 cut(s)	459, 468, 576, 1138, 1200, 1845, 2194
BspFNI	CGCG	3 cut(s)	115, 121, 380
BspPI	GGATC	1 cut(s)	2388
BspT104I	TTCGAA	2 cut(s)	651, 2273
BspT107I	GGYRCC	4 cut(s)	236, 674, 975, 2171
BspTNI	GGTCTC	3 cut(s)	484, 1452, 2091
BsrDI	GCAATG	2 cut(s)	1111, 2263
BsrFI	RCCGGY	4 cut(s)	233, 424, 877, 2215
BssAI	RCCGGY	4 cut(s)	233, 424, 877, 2215
BssECI	CCNNGG	9 cut(s)	585, 615, 960, 1224, 1225, 1625, 1945, 1951, 2125
BssMI	GATC	6 cut(s)	67, 1501, 1561, 1657, 2260, 2380
BssNAI	GTATAC	1 cut(s)	2305
BssNI	GRCGYC	3 cut(s)	237, 576, 2172
BssT1I	CCWWGG	4 cut(s)	585, 1945, 1951, 2125
Bst1107I	GTATAC	1 cut(s)	2305
Bst2UI	CCWGG	6 cut(s)	617, 827, 862, 1170, 1226, 1626
Bst4CI	ACNGT	4 cut(s)	526, 691, 1408, 1869
Bst6I	CTCTTC	2 cut(s)	199, 1728
BstACI	GRCGYC	3 cut(s)	237, 576, 2172
BstBAI	YACGTR	2 cut(s)	711, 1748
BstBI	TTCGAA	2 cut(s)	651, 2273
BstDEI	CTNAG	8 cut(s)	446, 455, 563, 1125, 1208, 1832, 1912, 2202
BstEII	GGTNACC	2 cut(s)	2288, 2420
BstF5I	GGATG	8 cut(s)	255, 855, 1504, 1524, 1528, 1546, 1636, 2284
BstFNI	CGCG	3 cut(s)	115, 121, 380
BstH2I	RGCGCY	2 cut(s)	240, 2175
BstHHI	GCGC	5 cut(s)	117, 123, 239, 760, 2174
BstKTI	GATC	6 cut(s)	70, 1504, 1564, 1660, 2263, 2383
BstMAI	GTCTC	4 cut(s)	484, 697, 1452, 2091
BstMBI	GATC	6 cut(s)	67, 1501, 1561, 1657, 2260, 2380
BstMCI	CGRYCG	3 cut(s)	429, 508, 1564
BstNI	CCWGG	6 cut(s)	617, 827, 862, 1170, 1226, 1626
BstNSI	RCATGY	2 cut(s)	377, 556
BstPI	GGTNACC	2 cut(s)	2288, 2420
BstUI	CGCG	3 cut(s)	115, 121, 380
BstV1I	GCAGC	8 cut(s)	20, 772, 861, 868, 1568, 1776, 1974, 2210
BstV2I	GAAGAC	2 cut(s)	1127, 1603
BstXI	CCANNNNNNTGG	3 cut(s)	229, 778, 1952
BstZ17I	GTATAC	1 cut(s)	2305
BstZI	CGGCCG	1 cut(s)	426
Bsu36I	CCTNAGG	1 cut(s)	563
BsuI	GTATCC	1 cut(s)	2205
BtgZI	GCGATG	1 cut(s)	25
BtsCI	GGATG	8 cut(s)	255, 855, 1504, 1524, 1528, 1546, 1636, 2284
BtsI	GCAGTG	1 cut(s)	1388
BtsIMutI	CAGTG	4 cut(s)	1388, 1614, 1801, 1813
CfoI	GCGC	5 cut(s)	117, 123, 239, 760, 2174
Cfr10I	RCCGGY	4 cut(s)	233, 424, 877, 2215
Cfr9I	CCCGGG	1 cut(s)	960
CseI	GACGC	1 cut(s)	565
CsiI	ACCWGGT	1 cut(s)	1168
Csp6I	GTAC	6 cut(s)	472, 976, 1259, 1522, 1839, 2066
CspAI	ACCGGT	1 cut(s)	2215
CviQI	GTAC	6 cut(s)	472, 976, 1259, 1522, 1839, 2066
DdeI	CTNAG	8 cut(s)	446, 455, 563, 1125, 1208, 1832, 1912, 2202
DinI	GGCGCC	2 cut(s)	238, 2173
DpnI	GATC	6 cut(s)	69, 1503, 1563, 1659, 2262, 2382
DpnII	GATC	6 cut(s)	67, 1501, 1561, 1657, 2260, 2380
DrdI	GACNNNNNNGTC	1 cut(s)	437
DriI	GACNNNNNGTC	2 cut(s)	556, 1128
DseDI	GACNNNNNNGTC	1 cut(s)	437
EaeI	YGGCCR	4 cut(s)	231, 426, 618, 1777
EagI	CGGCCG	1 cut(s)	426
Eam1104I	CTCTTC	2 cut(s)	199, 1728
Eam1105I	GACNNNNNGTC	2 cut(s)	556, 1128
EarI	CTCTTC	2 cut(s)	199, 1728
EciI	GGCGGA	4 cut(s)	306, 312, 354, 737
Ecl136II	GAGCTC	2 cut(s)	595, 607
EclXI	CGGCCG	1 cut(s)	426
Eco130I	CCWWGG	4 cut(s)	585, 1945, 1951, 2125
Eco147I	AGGCCT	1 cut(s)	1950
Eco24I	GRGCYC	2 cut(s)	597, 609
Eco31I	GGTCTC	3 cut(s)	484, 1452, 2091
Eco47I	GGWCC	5 cut(s)	439, 781, 1817, 2132, 2354
Eco52I	CGGCCG	1 cut(s)	426
Eco53kI	GAGCTC	2 cut(s)	595, 607
Eco57I	CTGAAG	3 cut(s)	1350, 1478, 2039
Eco72I	CACGTG	2 cut(s)	711, 1748
Eco81I	CCTNAGG	1 cut(s)	563
Eco88I	CYCGRG	3 cut(s)	596, 960, 2189
Eco91I	GGTNACC	2 cut(s)	2288, 2420
EcoICRI	GAGCTC	2 cut(s)	595, 607
EcoO65I	GGTNACC	2 cut(s)	2288, 2420
EcoRII	CCWGG	6 cut(s)	615, 825, 860, 1168, 1224, 1624
EcoT14I	CCWWGG	4 cut(s)	585, 1945, 1951, 2125
EcoT22I	ATGCAT	2 cut(s)	2119, 2242
EcoT38I	GRGCYC	2 cut(s)	597, 609
EgeI	GGCGCC	2 cut(s)	238, 2173
EheI	GGCGCC	2 cut(s)	238, 2173
ErhI	CCWWGG	4 cut(s)	585, 1945, 1951, 2125
Esp3I	CGTCTC	1 cut(s)	697
FalI	AAGNNNNNCTT	2 cut(s)	632, 664
FaqI	GGGAC	2 cut(s)	422, 544
FauI	CCCGC	1 cut(s)	286
FauNDI	CATATG	1 cut(s)	2332
FblI	GTMKAC	3 cut(s)	579, 645, 2304
FokI	GGATG	8 cut(s)	242, 862, 1511, 1511, 1515, 1553, 1643, 2291
FriOI	GRGCYC	2 cut(s)	597, 609
FspBI	CTAG	2 cut(s)	936, 2178
GlaI	GCGC	5 cut(s)	116, 122, 238, 759, 2173
GsuI	CTGGAG	1 cut(s)	794
HaeII	RGCGCY	2 cut(s)	240, 2175
HgaI	GACGC	1 cut(s)	565
HhaI	GCGC	5 cut(s)	117, 123, 239, 760, 2174
Hin1I	GRCGYC	3 cut(s)	237, 576, 2172
Hin6I	GCGC	5 cut(s)	115, 121, 237, 758, 2172
HinP1I	GCGC	5 cut(s)	115, 121, 237, 758, 2172
HincII	GTYRAC	3 cut(s)	646, 1012, 1942
HindII	GTYRAC	3 cut(s)	646, 1012, 1942
HindIII	AAGCTT	2 cut(s)	1097, 1514
HinfI	GANTC	9 cut(s)	401, 410, 485, 539, 952, 1123, 1129, 1252, 1603
HphI	GGTGA	8 cut(s)	127, 241, 679, 922, 940, 1931, 2174, 2432
Hpy166II	GTNNAC	8 cut(s)	15, 580, 646, 699, 1012, 1361, 1942, 2305
Hpy188I	TCNGA	9 cut(s)	484, 490, 550, 1128, 1209, 1425, 1704, 2267, 2414
Hpy188III	TCNNGA	9 cut(s)	466, 598, 637, 820, 1141, 1496, 1505, 1538, 1547
Hpy8I	GTNNAC	8 cut(s)	15, 580, 646, 699, 1012, 1361, 1942, 2305
Hpy99I	CGWCG	3 cut(s)	392, 530, 539
HpyCH4III	ACNGT	4 cut(s)	526, 691, 1408, 1869
HpyCH4IV	ACGT	3 cut(s)	710, 744, 1747
HpyCH4V	TGCA	8 cut(s)	373, 738, 889, 904, 946, 2117, 2198, 2240
HpyF3I	CTNAG	8 cut(s)	446, 455, 563, 1125, 1208, 1832, 1912, 2202
HpySE526I	ACGT	3 cut(s)	710, 744, 1747
Hsp92I	GRCGYC	3 cut(s)	237, 576, 2172
HspAI	GCGC	5 cut(s)	115, 121, 237, 758, 2172
KasI	GGCGCC	2 cut(s)	236, 2171
KpnI	GGTACC	1 cut(s)	979
KroI	GCCGGC	3 cut(s)	233, 424, 877
KroNI	GCCGGC	3 cut(s)	235, 426, 879
Kzo9I	GATC	6 cut(s)	67, 1501, 1561, 1657, 2260, 2380
LmnI	GCTCC	3 cut(s)	519, 612, 813
Lsp1109I	GCAGC	8 cut(s)	20, 772, 861, 868, 1568, 1776, 1974, 2210
LweI	GCATC	1 cut(s)	2104
MabI	ACCWGGT	1 cut(s)	1168
MaeI	CTAG	2 cut(s)	936, 2178
MaeII	ACGT	3 cut(s)	710, 744, 1747
MaeIII	GTNAC	7 cut(s)	247, 685, 1408, 2075, 2150, 2288, 2420
MalI	GATC	6 cut(s)	69, 1503, 1563, 1659, 2262, 2382
MboI	GATC	6 cut(s)	67, 1501, 1561, 1657, 2260, 2380
MfeI	CAATTG	1 cut(s)	622
MhlI	GDGCHC	5 cut(s)	524, 597, 609, 710, 1320
MlsI	TGGCCA	2 cut(s)	620, 1779
MluCI	AATT	9 cut(s)	74, 271, 622, 1021, 1148, 1508, 1598, 1690, 1709
MluNI	TGGCCA	2 cut(s)	620, 1779
Mly113I	GGCGCC	2 cut(s)	237, 2172
MlyI	GAGTC	7 cut(s)	404, 410, 494, 533, 1117, 1138, 1612
MmeI	TCCRAC	5 cut(s)	222, 468, 573, 1847, 2074
Mox20I	TGGCCA	2 cut(s)	620, 1779
Mph1103I	ATGCAT	2 cut(s)	2119, 2242
MroNI	GCCGGC	3 cut(s)	233, 424, 877
MscI	TGGCCA	2 cut(s)	620, 1779
MseI	TTAA	9 cut(s)	741, 1182, 1217, 1305, 1512, 1587, 2000, 2220, 2402
MslI	CAYNNNNRTG	5 cut(s)	743, 776, 1247, 2082, 2256
Msp20I	TGGCCA	2 cut(s)	620, 1779
MspA1I	CMGCKG	5 cut(s)	65, 459, 1836, 2017, 2201
MunI	CAATTG	1 cut(s)	622
MvaI	CCWGG	6 cut(s)	617, 827, 862, 1170, 1226, 1626
MvnI	CGCG	3 cut(s)	115, 121, 380
NaeI	GCCGGC	3 cut(s)	235, 426, 879
NarI	GGCGCC	2 cut(s)	237, 2172
NciI	CCSGG	7 cut(s)	570, 785, 961, 962, 1091, 1398, 1574
NdeI	CATATG	1 cut(s)	2332
NdeII	GATC	6 cut(s)	67, 1501, 1561, 1657, 2260, 2380
NgoMIV	GCCGGC	3 cut(s)	233, 424, 877
NmeAIII	GCCGAG	2 cut(s)	616, 1051
NmuCI	GTSAC	4 cut(s)	247, 685, 2075, 2420
NsiI	ATGCAT	2 cut(s)	2119, 2242
NspI	RCATGY	2 cut(s)	377, 556
NspV	TTCGAA	2 cut(s)	651, 2273
OliI	CACNNNNGTG	1 cut(s)	2082
PaeI	GCATGC	1 cut(s)	377
PaeR7I	CTCGAG	2 cut(s)	596, 2189
PasI	CCCWGGG	1 cut(s)	1225
PceI	AGGCCT	1 cut(s)	1950
PcsI	WCGNNNNNNNCGW	5 cut(s)	396, 534, 642, 687, 707
PdiI	GCCGGC	3 cut(s)	235, 426, 879
PfeI	GAWTC	2 cut(s)	952, 1252
PflMI	CCANNNNNTGG	1 cut(s)	616
PfoI	TCCNGGA	1 cut(s)	1089
PinAI	ACCGGT	1 cut(s)	2215
Ple19I	CGATCG	1 cut(s)	1564
PleI	GAGTC	7 cut(s)	404, 409, 493, 533, 1117, 1137, 1611
PluTI	GGCGCC	2 cut(s)	240, 2175
PmaCI	CACGTG	2 cut(s)	711, 1748
PmlI	CACGTG	2 cut(s)	711, 1748
PpsI	GAGTC	7 cut(s)	404, 409, 493, 533, 1117, 1137, 1611
Ppu21I	YACGTR	2 cut(s)	711, 1748
Psp124BI	GAGCTC	2 cut(s)	597, 609
Psp6I	CCWGG	6 cut(s)	615, 825, 860, 1168, 1224, 1624
PspCI	CACGTG	2 cut(s)	711, 1748
PspEI	GGTNACC	2 cut(s)	2288, 2420
PspGI	CCWGG	6 cut(s)	615, 825, 860, 1168, 1224, 1624
PspXI	VCTCGAGB	1 cut(s)	2189
PvuI	CGATCG	1 cut(s)	1564
PvuII	CAGCTG	2 cut(s)	2017, 2201
RgaI	GCGATCGC	1 cut(s)	1564
RsaI	GTAC	6 cut(s)	473, 977, 1260, 1523, 1840, 2067
RsaNI	GTAC	6 cut(s)	472, 976, 1259, 1522, 1839, 2066
RseI	CAYNNNNRTG	5 cut(s)	743, 776, 1247, 2082, 2256
SacI	GAGCTC	2 cut(s)	597, 609
SalI	GTCGAC	1 cut(s)	644
SaqAI	TTAA	9 cut(s)	741, 1182, 1217, 1305, 1512, 1587, 2000, 2220, 2402
Sau3AI	GATC	6 cut(s)	67, 1501, 1561, 1657, 2260, 2380
SchI	GAGTC	7 cut(s)	404, 410, 494, 533, 1117, 1138, 1612
SduI	GDGCHC	5 cut(s)	524, 597, 609, 710, 1320
SexAI	ACCWGGT	1 cut(s)	1168
SfaAI	GCGATCGC	1 cut(s)	1564
SfaNI	GCATC	1 cut(s)	2104
SfoI	GGCGCC	2 cut(s)	238, 2173
Sfr274I	CTCGAG	2 cut(s)	596, 2189
SfuI	TTCGAA	2 cut(s)	651, 2273
SgfI	GCGATCGC	1 cut(s)	1564
SinI	GGWCC	5 cut(s)	439, 781, 1817, 2132, 2354
SlaI	CTCGAG	2 cut(s)	596, 2189
SmaI	CCCGGG	1 cut(s)	962
SmiMI	CAYNNNNRTG	5 cut(s)	743, 776, 1247, 2082, 2256
SmlI	CTYRAG	4 cut(s)	596, 968, 1517, 2189
SmoI	CTYRAG	4 cut(s)	596, 968, 1517, 2189
SphI	GCATGC	1 cut(s)	377
Sse9I	AATT	9 cut(s)	74, 271, 622, 1021, 1148, 1508, 1598, 1690, 1709
SseBI	AGGCCT	1 cut(s)	1950
SspDI	GGCGCC	2 cut(s)	236, 2171
SspMI	CTAG	2 cut(s)	936, 2178
SstI	GAGCTC	2 cut(s)	597, 609
StuI	AGGCCT	1 cut(s)	1950
StyI	CCWWGG	4 cut(s)	585, 1945, 1951, 2125
TaaI	ACNGT	4 cut(s)	526, 691, 1408, 1869
TaiI	ACGT	3 cut(s)	713, 747, 1750
TaqII	GACCGA	1 cut(s)	809
TasI	AATT	9 cut(s)	74, 271, 622, 1021, 1148, 1508, 1598, 1690, 1709
TatI	WGTACW	3 cut(s)	471, 1521, 2065
TfiI	GAWTC	2 cut(s)	952, 1252
Tru1I	TTAA	9 cut(s)	741, 1182, 1217, 1305, 1512, 1587, 2000, 2220, 2402
Tru9I	TTAA	9 cut(s)	741, 1182, 1217, 1305, 1512, 1587, 2000, 2220, 2402
TscAI	CASTG	4 cut(s)	1395, 1621, 1801, 1813
TseFI	GTSAC	4 cut(s)	247, 685, 2075, 2420
TseI	GCWGC	8 cut(s)	8, 760, 874, 881, 1581, 1789, 1962, 2198
Tsp45I	GTSAC	4 cut(s)	247, 685, 2075, 2420
TspDTI	ATGAA	6 cut(s)	274, 1290, 1650, 1685, 1767, 2060
TspGWI	ACGGA	4 cut(s)	716, 1355, 1449, 2224
TspMI	CCCGGG	1 cut(s)	960
TspRI	CASTG	4 cut(s)	1395, 1621, 1801, 1813
Van91I	CCANNNNNTGG	1 cut(s)	616
VpaK11BI	GGWCC	5 cut(s)	439, 781, 1817, 2132, 2354
XapI	RAATTY	4 cut(s)	1021, 1508, 1690, 1709
XceI	RCATGY	2 cut(s)	377, 556
XhoI	CTCGAG	2 cut(s)	596, 2189
XmaI	CCCGGG	1 cut(s)	960
XmiI	GTMKAC	3 cut(s)	579, 645, 2304
XspI	CTAG	2 cut(s)	936, 2178
Zsp2I	ATGCAT	2 cut(s)	2119, 2242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.