Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004162

Physical Location & Seq

Genomic Coordinates Reverse (-)

30823041 .. 30823670

Gene Structure 630 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0273100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGAATTCCTTGCGATGATGCTGAGGACATTCCCAACAGATCGAATCAAAAAATTCGGTTCAAACGTTTACAGAAAAGCCCCCAAAGGAGGTTTTTTCCATTTTGTGTGGGAAGCCTTCAGAGACCCAACAATACTAATCCTCTTAGGCTGTGCGGCACTTTCTCTTGGTTTTGACATCAATGAACATGGATTCAAAGAAGGTTGTACTAATGGTGGAACCATATTGCTCGCAGTCATTCAAATCATTTCCGTGTCTGCAGTAAGCGATTACAAGCAGAGCAGACCTTTGGTCCGTAACAATATCCAAATTGAGGCGTGGAGAGGTGGCAGGAGGCAAAAGATTTCTGTTTTTGAAATTGTGGTTGGGGATGTAATTCTCTTGAATATTGGAGATCGGGTGCCGGCTGATGGATTACTTGTACAAGGGCATTCCTTGCAAGTAGACGAATCAAGCATGACAGGAACTGATAGCCCTGTTGAAATTAGCCACCATCAGAATCCCTTCCTTTTTTCTGGGACAAAAATCACACATGGATATGGTCGAATGCTTGTCACATCCGTTGGGATGAACACAACGTGGGGTGAGAGGATGAGCCAAATGAGGCAAGACTCCACTGAAAAACCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006605 GO:0006810 GO:0006886 GO:0006996 GO:0007275 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009653 GO:0009657 GO:0009658 GO:0009662 GO:0009707 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009941 GO:0009987 GO:0010006 GO:0010033 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019867 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031350 GO:0031351 GO:0031354 GO:0031355 GO:0031358 GO:0031359 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0048598 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0061927 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072596 GO:0072598 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bac_surface_Ag

Protein Analysis

209

Amino Acids

23.25

Weight (kDa)

8.6

Isoelectric Point (pI)

38.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_ATPase_N	PF00690	14 - 55	2.5e-09	Cation transporter/ATPase, N-terminus
E1-E2_ATPase	PF00122	107 - 201	6.3e-21	P-type ATPase actuator domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004162)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46740 AT4G09080 AT4G09080 AT4G09080
fragaria_vesca	FvH4_3g28760 FvH4_3g28760 FvH4_3g28760 FvH4_5g29410
malus_domestica	MD03G1086500.v1.1 MD11G1095600.v1.1
prunus_persica	Prupe.6G071100_v2.0.a1
pyrus_communis	pycom03g06860 pycom11g08100 pycom11g08110
rosa_chinensis	RchiOBHm_Chr5g0052291 RchiOBHm_Chr7g0222311
rosa_laevigata	RLG00000002071 RLG00000034828
rosa_multiflora	Rmu_sc0007069.1_g000009 Rmu_sc0028377.1_g000001 Rmu_sc0032875.1_g000001 Rmu_sc0032876.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028120 Rroxscaffold_3G00237120
rosa_rugosa	Rorug05G0273100 Rorug07G0207600
rosa_samantha	Rh5CG382000 Rh5DG371900 Rh7AG349900 Rh7DG346100
rosa_wichuraiana	Rw5G032630 Rw5G032670 Rw7G029530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	400
AccI	GTMKAC	1 cut(s)	444
AciI	CCGC	1 cut(s)	155
AclI	AACGTT	1 cut(s)	66
AcsI	RAATTY	2 cut(s)	5, 53
AcuI	CTGAAG	1 cut(s)	103
AdeI	CACNNNGTG	1 cut(s)	579
AfaI	GTAC	2 cut(s)	208, 423
AfiI	CCNNNNNNNGG	3 cut(s)	89, 313, 410
AgsI	TTSAA	6 cut(s)	63, 196, 242, 356, 385, 482
AhdI	GACNNNNNGTC	1 cut(s)	290
AjuI	GAANNNNNNNTTGG	2 cut(s)	348, 380
Alw26I	GTCTC	1 cut(s)	117
AlwNI	CAGNNNCTG	1 cut(s)	467
ApoI	RAATTY	2 cut(s)	5, 53
Asp700I	GAANNNNTTC	1 cut(s)	503
AspS9I	GGNCC	1 cut(s)	292
AsuHPI	GGTGA	1 cut(s)	596
AvaII	GGWCC	1 cut(s)	292
BanI	GGYRCC	1 cut(s)	400
BbvCI	CCTCAGC	1 cut(s)	23
BccI	CCATC	2 cut(s)	404, 501
BcoDI	GTCTC	1 cut(s)	117
BfmI	CTRYAG	1 cut(s)	258
BisI	GCNGC	1 cut(s)	156
BlsI	GCNGC	1 cut(s)	157
Bme18I	GGWCC	1 cut(s)	292
BmeRI	GACNNNNNGTC	1 cut(s)	290
BmgT120I	GGNCC	1 cut(s)	292
BmiI	GGNNCC	2 cut(s)	220, 402
BmsI	GCATC	1 cut(s)	9
Bpu10I	CCTNAGC	1 cut(s)	23
BsaI	GGTCTC	1 cut(s)	117
BsaXI	ACNNNNNCTCC	2 cut(s)	384, 414
Bsc4I	CCNNNNNNNGG	3 cut(s)	89, 313, 410
Bse118I	RCCGGY	1 cut(s)	403
BseGI	GGATG	4 cut(s)	376, 557, 573, 597
BseLI	CCNNNNNNNGG	3 cut(s)	89, 313, 410
BseMII	CTCAG	1 cut(s)	14
BshNI	GGYRCC	1 cut(s)	400
BsiSI	CCGG	1 cut(s)	404
BslFI	GGGAC	1 cut(s)	532
BslI	CCNNNNNNNGG	3 cut(s)	89, 313, 410
BsmAI	GTCTC	1 cut(s)	117
BsmFI	GGGAC	1 cut(s)	532
BsmI	GAATGC	2 cut(s)	430, 552
Bso31I	GGTCTC	1 cut(s)	117
Bsp1407I	TGTACA	1 cut(s)	421
Bsp143I	GATC	2 cut(s)	40, 394
BspACI	CCGC	1 cut(s)	155
BspCNI	CTCAG	1 cut(s)	15
BspLI	GGNNCC	2 cut(s)	220, 402
BspMAI	CTGCAG	1 cut(s)	262
BspT107I	GGYRCC	1 cut(s)	400
BspTNI	GGTCTC	1 cut(s)	117
BsrFI	RCCGGY	1 cut(s)	403
BsrGI	TGTACA	1 cut(s)	421
BssAI	RCCGGY	1 cut(s)	403
BssMI	GATC	2 cut(s)	40, 394
BstAPI	GCANNNNNTGC	1 cut(s)	436
BstAUI	TGTACA	1 cut(s)	421
BstC8I	GCNNGC	2 cut(s)	231, 405
BstDEI	CTNAG	2 cut(s)	23, 145
BstF5I	GGATG	4 cut(s)	376, 557, 573, 597
BstKTI	GATC	2 cut(s)	43, 397
BstMAI	GTCTC	1 cut(s)	117
BstMBI	GATC	2 cut(s)	40, 394
BstMWI	GCNNNNNNNGC	1 cut(s)	436
BstSFI	CTRYAG	1 cut(s)	258
BtgZI	GCGATG	1 cut(s)	29
BtsCI	GGATG	4 cut(s)	376, 557, 573, 597
BtsIMutI	CAGTG	1 cut(s)	615
Cac8I	GCNNGC	2 cut(s)	231, 405
CaiI	CAGNNNCTG	1 cut(s)	467
Cfr10I	RCCGGY	1 cut(s)	403
Cfr13I	GGNCC	1 cut(s)	292
Csp6I	GTAC	2 cut(s)	207, 422
CviAII	CATG	3 cut(s)	188, 457, 533
CviJI	RGCY	7 cut(s)	80, 116, 150, 407, 474, 489, 597
CviKI_1	RGCY	7 cut(s)	80, 116, 150, 407, 474, 489, 597
CviQI	GTAC	2 cut(s)	207, 422
DdeI	CTNAG	2 cut(s)	23, 145
DpnI	GATC	2 cut(s)	42, 396
DpnII	GATC	2 cut(s)	40, 394
DraIII	CACNNNGTG	1 cut(s)	579
DriI	GACNNNNNGTC	1 cut(s)	290
Eam1105I	GACNNNNNGTC	1 cut(s)	290
Eco31I	GGTCTC	1 cut(s)	117
Eco47I	GGWCC	1 cut(s)	292
Eco57I	CTGAAG	1 cut(s)	103
EcoRI	GAATTC	1 cut(s)	5
FaeI	CATG	3 cut(s)	191, 460, 536
FaiI	YATR	6 cut(s)	189, 224, 458, 534, 540, 628
FaqI	GGGAC	1 cut(s)	532
FatI	CATG	3 cut(s)	187, 456, 532
FblI	GTMKAC	1 cut(s)	444
Fnu4HI	GCNGC	1 cut(s)	156
FokI	GGATG	4 cut(s)	383, 544, 580, 604
Fsp4HI	GCNGC	1 cut(s)	156
GluI	GCNGC	1 cut(s)	156
HapII	CCGG	1 cut(s)	404
Hin1II	CATG	3 cut(s)	191, 460, 536
HinfI	GANTC	5 cut(s)	45, 192, 449, 499, 611
HpaII	CCGG	1 cut(s)	404
HphI	GGTGA	1 cut(s)	596
Hpy166II	GTNNAC	2 cut(s)	70, 445
Hpy188I	TCNGA	2 cut(s)	122, 498
Hpy188III	TCNNGA	1 cut(s)	382
Hpy8I	GTNNAC	2 cut(s)	70, 445
HpyAV	CCTTC	3 cut(s)	127, 194, 514
HpyCH4IV	ACGT	2 cut(s)	66, 578
HpyCH4V	TGCA	2 cut(s)	260, 439
HpyF10VI	GCNNNNNNNGC	1 cut(s)	436
HpyF3I	CTNAG	2 cut(s)	23, 145
HpySE526I	ACGT	2 cut(s)	66, 578
Hsp92II	CATG	3 cut(s)	191, 460, 536
KroI	GCCGGC	1 cut(s)	403
KroNI	GCCGGC	1 cut(s)	405
Kzo9I	GATC	2 cut(s)	40, 394
LpnPI	CCDG	5 cut(s)	316, 417, 447, 489, 501
LweI	GCATC	1 cut(s)	9
MaeII	ACGT	2 cut(s)	66, 578
MaeIII	GTNAC	2 cut(s)	296, 553
MalI	GATC	2 cut(s)	42, 396
MboI	GATC	2 cut(s)	40, 394
MluCI	AATT	6 cut(s)	5, 53, 309, 357, 375, 483
MlyI	GAGTC	1 cut(s)	605
MnlI	CCTC	8 cut(s)	18, 83, 152, 307, 317, 327, 582, 597
MroNI	GCCGGC	1 cut(s)	403
MroXI	GAANNNNTTC	1 cut(s)	503
MslI	CAYNNNNRTG	2 cut(s)	251, 537
MspI	CCGG	1 cut(s)	404
Mva1269I	GAATGC	2 cut(s)	430, 552
MwoI	GCNNNNNNNGC	1 cut(s)	436
NaeI	GCCGGC	1 cut(s)	405
NdeII	GATC	2 cut(s)	40, 394
NgoMIV	GCCGGC	1 cut(s)	403
NlaIII	CATG	3 cut(s)	191, 460, 536
NlaIV	GGNNCC	2 cut(s)	220, 402
NmuCI	GTSAC	1 cut(s)	553
PcsI	WCGNNNNNNNCGW	1 cut(s)	63
PctI	GAATGC	2 cut(s)	430, 552
PdiI	GCCGGC	1 cut(s)	405
PdmI	GAANNNNTTC	1 cut(s)	503
PfeI	GAWTC	4 cut(s)	45, 192, 449, 499
PkrI	GCNGC	1 cut(s)	157
PleI	GAGTC	1 cut(s)	605
PpsI	GAGTC	1 cut(s)	605
Psp1406I	AACGTT	1 cut(s)	66
PspN4I	GGNNCC	2 cut(s)	220, 402
PspPI	GGNCC	1 cut(s)	292
PstI	CTGCAG	1 cut(s)	262
PstNI	CAGNNNCTG	1 cut(s)	467
RsaI	GTAC	2 cut(s)	208, 423
RsaNI	GTAC	2 cut(s)	207, 422
RseI	CAYNNNNRTG	2 cut(s)	251, 537
SatI	GCNGC	1 cut(s)	156
Sau3AI	GATC	2 cut(s)	40, 394
Sau96I	GGNCC	1 cut(s)	292
SchI	GAGTC	1 cut(s)	605
SetI	ASST	6 cut(s)	69, 94, 205, 289, 328, 581
SfaNI	GCATC	1 cut(s)	9
SfcI	CTRYAG	1 cut(s)	258
SinI	GGWCC	1 cut(s)	292
SmiMI	CAYNNNNRTG	2 cut(s)	251, 537
Sse9I	AATT	6 cut(s)	5, 53, 309, 357, 375, 483
SsiI	CCGC	1 cut(s)	155
SspI	AATATT	1 cut(s)	388
TaiI	ACGT	2 cut(s)	69, 581
TaqI	TCGA	2 cut(s)	43, 544
TasI	AATT	6 cut(s)	5, 53, 309, 357, 375, 483
TatI	WGTACW	2 cut(s)	206, 421
TauI	GCSGC	1 cut(s)	158
TfiI	GAWTC	4 cut(s)	45, 192, 449, 499
TscAI	CASTG	1 cut(s)	622
TseFI	GTSAC	1 cut(s)	553
Tsp45I	GTSAC	1 cut(s)	553
TspDTI	ATGAA	2 cut(s)	198, 584
TspGWI	ACGGA	3 cut(s)	241, 284, 550
TspRI	CASTG	1 cut(s)	622
VpaK11BI	GGWCC	1 cut(s)	292
XapI	RAATTY	2 cut(s)	5, 53
XmiI	GTMKAC	1 cut(s)	444
XmnI	GAANNNNTTC	1 cut(s)	503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.