Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004162

Physical Location & Seq

Genomic Coordinates Reverse (-)

43663977 .. 43669030

Gene Structure 5054 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19896

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2436 bp

ATGTTGGCCGCAGCGCCGCCCAGGACCTACCGCACCCCCACCACTCTCCCTTCCTCCTCCTCCTCCGCTCGCAAATTAGCCTCGCCCTCCTCCGCCGCTACAGCCACCAACAACACCCGCCCCCTAATCGTCAAATGCTGCGCCGTCTCTCCCTCCTCCTCGCCCCTTTCTCAAAACCCTAAACCCTCTCCGAATCTCCTCCAAAACGTCGCCAAAACCGTCGCCGGCGTCACCACCGTCACCCTCGTCTTGAACTTGAGCAATTTTCCCGCCTTCCTCGGAGGCGGCGGCGGCGGCAATTCCGCCGGCGGAGGCGGAGGCGGAGGAGGCGATGGTTCGGGCGGCGGCGGCGGAGGTTTTTGGAGGAGGCTGTTCGGGCCGCAGCTGGTGGCGAATGCCGACGAGCCACAGTCGCAGGAGTGGGACTCTCACGGATTGCCGGCCAACATTGTGGTCCAGCTCAACAAGCTCAGTGGCTTCAAGAAATACAAGGTCTCCGAGATCTTGTTCTTCGATCGGAGGCGGTGGAGCACCGTCGGGACCGAGGACTCCTTCTTTGAAATGGTCTCCCTCAGACCCGGCGGAGTCTACACCAAGGCCCAGCTCCAGAAAGAGCTCGAAACCCTGGCCAATTGCGGAATGTTCGAGAAGGTCGATTTGGAAGGGAAGACCAACCCCGACGGCACCCTCGGCGTCACCATTTCCTTCACTGAGAGCACGTGGCAGTCGGCGGACAAGTTCCGGTGTATCAACGTCGGCCTGATGGCGCAGTCCAAGCCCATCGAAATGGACCCGGACATGACTGATAAGGAGAAGATGGAGTATTTCAGGAACCAGGAGAAGGATTACAAGAGGAGGATTGAGAGGGCCAGGCCGTGCTTGTTGCCGGCTCCGGTGCAGAGGGAGGTGTTGCTCATGTTAAGAGAGCAAGGGAAGGTGAGTGCTAGGCTGTTGCAGAAGATTCGGGACCGGGTTCAGAAATGGTACCAAGATGAGGGGTACGCGTGTGCTCAAGTTGTCAATTTCGGGAATTTGAACACCAAAGAGGTTGTGTGTGAAGTGGTGGAAGGTGATATCACACAGCTGGTTATTCAGTTTCAGGATAAGCTTGGCAATTTTGTGGAAGGGAACACTCAGATTCCTGTGGTGAAGAGAGAATTGCCCAAACAGCTCCGACCAGGTTATGTCTTTAATATAGAAGCAGGGAAACAAGCTCTGAGGAACATAAACTCCCTGGCATTGTTTTCAAACATTGAAGTGAATCCACGACCGGATGAGAAGAATGAAGGAGGGATAATTGTTGAAATAAAGCTTAAAGAACTAGAACAAAAGACCGCCGAAGTCAGCACGGAATGGAGCATTGTTCCTGGACGTGGTGGTTATCCCACTTTGGCTTCACTGCAGCCTGGTGGGACAGTTACATTTGAACATCGAAATCTCAATGGGTTGAATAGGTCTATTCTCGGTTCAGTAACCACCAGCAACTTCTACAACCCTCAGGATGATCTTGCTTTTAAGCTTGAGTATGTGCATCCATATCTGGATGGTGTGTACAATCCCCGCAATCGCTCTCTCCGCGTAAGCTGCTTCAACAGTCGAAAATTGAGTCCAGTCTTTACTGGTGGGCCAGGGGCTGATGAAGTCCCCCCTATATGGGTTGACCGAGCGGGCATGAAGGCTAATATAACAGAGAATTTCAACCGTCAGAGCAAATTCACTTATGGACTTGTAATGGAAGAGATAACAACACGTGATGAACGCAGCCATATCTGTTCAAATGGCCAAAGAGTGTTGCCCAGTGGTGGAGTCAGTGAAGATGGACCTCCAACAACTCTGAGTGGTACGGGCATTGATCGTGTGGCATTTTTACAGTCAAATATCACACGTGATAACACCAAGTTCGTGAATGGAACTATAGTTGGTGAGAGGAATGTGTTTCAGGTTGACCAAGGCCTTGGCGTTGGCAGCAAGTTTCCATTCTTCAACCGCCACCAGTTAACGTTAACAAGATTTTTCCAGCTGAAGGAAGTGGAGGAAGGTGCCGGCAAACCACCACCACCTGTCCTTGTACTTCATGGTCACTATGGTGGCTGTGTCGGAGACCTTCCAAGTTATGATGCATTTACTCTTGGAGGTCCATATTCGGTGAGAGGTTACAACATGGGTGAAATAGGCGCTGCCAGGCAAATCCTTGAGCTTGCAGCTGAGCTACGGATACCAGTAAAAGGGACACATGTATATGCATTTGCAGAGCATGGCAATGATCTCGGAAGTTCGAAGGATGTCAAGGGTAACCCGACAGAGGTATACAGGCGAGTGGGTCATGGGTCATCATATGGTGTTGGTGTCAAGTTAGGTCTAGTAAGAGCAGAATATGCTGTGGATCACAACTCAGGCTCCGGTTCAGTATTCTTCCGATTTGGTGAGAGATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006605 GO:0006810 GO:0006886 GO:0006996 GO:0007275 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009653 GO:0009657 GO:0009658 GO:0009662 GO:0009707 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009941 GO:0009987 GO:0010006 GO:0010033 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019867 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031350 GO:0031351 GO:0031354 GO:0031355 GO:0031358 GO:0031359 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0048598 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0061927 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072596 GO:0072598 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bac_surface_Ag

Protein Analysis

811

Amino Acids

88.54

Weight (kDa)

8.82

Isoelectric Point (pI)

46.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
POTRA1_3_Toc75	PF25282	147 - 238	8.4e-41	Toc75-like, POTRA domain
POTRA2_Toc75	PF25280	247 - 358	3.5e-59	Toc75-like, second POTRA domain
POTRA1_3_Toc75	PF25282	359 - 440	7e-31	Toc75-like, POTRA domain
Omp85	PF01103	479 - 808	5.7e-20	Omp85 superfamily domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0004162)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46740 AT4G09080 AT4G09080 AT4G09080
fragaria_vesca	FvH4_3g28760 FvH4_3g28760 FvH4_3g28760 FvH4_5g29410
malus_domestica	MD03G1086500.v1.1 MD11G1095600.v1.1
prunus_persica	Prupe.6G071100_v2.0.a1
pyrus_communis	pycom03g06860 pycom11g08100 pycom11g08110
rosa_chinensis	RchiOBHm_Chr5g0052291 RchiOBHm_Chr7g0222311
rosa_laevigata	RLG00000002071 RLG00000034828
rosa_multiflora	Rmu_sc0007069.1_g000009 Rmu_sc0028377.1_g000001 Rmu_sc0032875.1_g000001 Rmu_sc0032876.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028120 Rroxscaffold_3G00237120
rosa_rugosa	Rorug05G0273100 Rorug07G0207600
rosa_samantha	Rh5CG382000 Rh5DG371900 Rh7AG349900 Rh7DG346100
rosa_wichuraiana	Rw5G032630 Rw5G032670 Rw7G029530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	984
AccB1I	GGYRCC	3 cut(s)	683, 984, 2039
AccBSI	CCGCTC	2 cut(s)	68, 1667
AccI	GTMKAC	2 cut(s)	588, 2307
AccII	CGCG	2 cut(s)	1004, 1578
AclI	AACGTT	1 cut(s)	2000
AclWI	GGATC	1 cut(s)	2391
AcoI	YGGCCR	4 cut(s)	6, 441, 627, 1780
AcsI	RAATTY	3 cut(s)	1030, 1693, 1712
AcuI	CTGAAG	1 cut(s)	2042
AcvI	CACGTG	3 cut(s)	720, 1751, 1886
AcyI	GRCGYC	2 cut(s)	228, 693
AfaI	GTAC	5 cut(s)	986, 1001, 1553, 1843, 2070
AfiI	CCNNNNNNNGG	9 cut(s)	841, 994, 1373, 1653, 1654, 1802, 2023, 2225, 2302
AflIII	ACRYGT	4 cut(s)	1002, 1748, 1883, 2233
AjiI	CACGTC	1 cut(s)	1373
AjuI	GAANNNNNNNTTGG	2 cut(s)	641, 673
AleI	CACNNNNGTG	1 cut(s)	2085
AloI	GAACNNNNNNTCC	2 cut(s)	1214, 1246
Alw21I	GWGCWC	4 cut(s)	533, 618, 719, 1012
Alw26I	GTCTC	4 cut(s)	151, 499, 571, 2094
AlwI	GGATC	1 cut(s)	2391
AlwNI	CAGNNNCTG	1 cut(s)	1634
ApeKI	GCWGC	9 cut(s)	11, 138, 382, 1402, 1584, 1761, 1965, 2177, 2201
ApoI	RAATTY	3 cut(s)	1030, 1693, 1712
ArsI	GACNNNNNNTTYG	4 cut(s)	539, 571, 1591, 1623
Asp718I	GGTACC	1 cut(s)	984
AspLEI	GCGC	4 cut(s)	16, 143, 769, 2177
AsuC2I	CCSGG	3 cut(s)	579, 794, 971
AsuII	TTCGAA	1 cut(s)	2276
AvaII	GGWCC	7 cut(s)	24, 454, 540, 790, 967, 1820, 2135
AxyI	CCTNAGG	1 cut(s)	1497
BaeI	ACNNNNGTAYC	2 cut(s)	991, 1024
BalI	TGGCCA	2 cut(s)	629, 1782
BanI	GGYRCC	3 cut(s)	683, 984, 2039
BanII	GRGCYC	1 cut(s)	618
BbrPI	CACGTG	3 cut(s)	720, 1751, 1886
BbsI	GAAGAC	1 cut(s)	674
Bbv12I	GWGCWC	4 cut(s)	533, 618, 719, 1012
BbvI	GCAGC	9 cut(s)	23, 125, 394, 1414, 1571, 1773, 1977, 2164, 2213
BccI	CCATC	6 cut(s)	326, 757, 788, 811, 1538, 1811
BceAI	ACGGC	3 cut(s)	128, 697, 859
BcgI	CGANNNNNNTGC	4 cut(s)	944, 978, 2248, 2282
BciVI	GTATCC	1 cut(s)	2208
BcnI	CCSGG	3 cut(s)	579, 794, 971
BcoDI	GTCTC	4 cut(s)	151, 499, 571, 2094
BfaI	CTAG	3 cut(s)	945, 1322, 2360
BfmI	CTRYAG	3 cut(s)	99, 1400, 1914
BfoI	RGCGCY	2 cut(s)	17, 2178
BfuI	GTATCC	1 cut(s)	2208
BglII	AGATCT	1 cut(s)	501
BlpI	GCTNAGC	1 cut(s)	2205
Bme18I	GGWCC	7 cut(s)	24, 454, 540, 790, 967, 1820, 2135
BmgBI	CACGTC	1 cut(s)	1373
BmiI	GGNNCC	9 cut(s)	541, 685, 792, 833, 891, 968, 986, 2041, 2398
BmrI	ACTGGG	1 cut(s)	1791
BmsI	GCATC	2 cut(s)	1540, 2107
BmuI	ACTGGG	1 cut(s)	1791
BpiI	GAAGAC	1 cut(s)	674
BplI	GAGNNNNNCTC	2 cut(s)	410, 442
BpmI	CTGGAG	1 cut(s)	590
Bpu1102I	GCTNAGC	1 cut(s)	2205
Bpu14I	TTCGAA	1 cut(s)	2276
BpuEI	CTTGAG	4 cut(s)	277, 996, 1541, 2213
BpuMI	CCSGG	3 cut(s)	579, 794, 971
BsaAI	YACGTR	3 cut(s)	720, 1751, 1886
BsaHI	GRCGYC	2 cut(s)	228, 693
BsaI	GGTCTC	3 cut(s)	499, 571, 2094
BsaWI	WCCGGW	4 cut(s)	741, 892, 1270, 2399
BsaXI	ACNNNNNCTCC	6 cut(s)	479, 509, 1214, 1244, 2381, 2411
Bsc4I	CCNNNNNNNGG	9 cut(s)	841, 994, 1373, 1653, 1654, 1802, 2023, 2225, 2302
Bse118I	RCCGGY	5 cut(s)	224, 305, 439, 886, 2042
Bse1I	ACTGG	5 cut(s)	1610, 1624, 1797, 1993, 2219
Bse21I	CCTNAGG	1 cut(s)	1497
Bse3DI	GCAATG	1 cut(s)	2266
BseGI	GGATG	5 cut(s)	1279, 1507, 1531, 1549, 2287
BseLI	CCNNNNNNNGG	9 cut(s)	841, 994, 1373, 1653, 1654, 1802, 2023, 2225, 2302
BseMI	GCAATG	1 cut(s)	2266
BseMII	CTCAG	9 cut(s)	484, 586, 702, 1148, 1208, 1511, 1826, 2196, 2406
BseNI	ACTGG	5 cut(s)	1610, 1624, 1797, 1993, 2219
BseXI	GCAGC	9 cut(s)	23, 125, 394, 1414, 1571, 1773, 1977, 2164, 2213
BseYI	CCCAGC	1 cut(s)	600
BsgI	GTGCAG	1 cut(s)	917
Bsh1236I	CGCG	2 cut(s)	1004, 1578
Bsh1285I	CGRYCG	2 cut(s)	517, 1271
BshNI	GGYRCC	3 cut(s)	683, 984, 2039
BsiEI	CGRYCG	2 cut(s)	517, 1271
BsiHKAI	GWGCWC	4 cut(s)	533, 618, 719, 1012
BslFI	GGGAC	6 cut(s)	437, 553, 980, 1426, 1628, 2242
BslI	CCNNNNNNNGG	9 cut(s)	841, 994, 1373, 1653, 1654, 1802, 2023, 2225, 2302
BsmAI	GTCTC	4 cut(s)	151, 499, 571, 2094
BsmBI	CGTCTC	1 cut(s)	151
BsmFI	GGGAC	6 cut(s)	437, 553, 980, 1426, 1628, 2242
BsmI	GAATGC	1 cut(s)	400
Bso31I	GGTCTC	3 cut(s)	499, 571, 2094
Bsp119I	TTCGAA	1 cut(s)	2276
Bsp1286I	GDGCHC	4 cut(s)	533, 618, 719, 1012
Bsp1407I	TGTACA	1 cut(s)	1551
Bsp143I	GATC	6 cut(s)	501, 514, 1504, 1852, 2263, 2383
Bsp1720I	GCTNAGC	1 cut(s)	2205
BspCNI	CTCAG	9 cut(s)	483, 585, 703, 1147, 1209, 1510, 1827, 2197, 2405
BspFNI	CGCG	2 cut(s)	1004, 1578
BspLI	GGNNCC	9 cut(s)	541, 685, 792, 833, 891, 968, 986, 2041, 2398
BspMAI	CTGCAG	1 cut(s)	1404
BspPI	GGATC	1 cut(s)	2391
BspT104I	TTCGAA	1 cut(s)	2276
BspT107I	GGYRCC	3 cut(s)	683, 984, 2039
BspTNI	GGTCTC	3 cut(s)	499, 571, 2094
BsrBI	CCGCTC	2 cut(s)	68, 1667
BsrDI	GCAATG	1 cut(s)	2266
BsrFI	RCCGGY	5 cut(s)	224, 305, 439, 886, 2042
BsrGI	TGTACA	1 cut(s)	1551
BsrI	ACTGG	5 cut(s)	1610, 1624, 1797, 1993, 2219
BssAI	RCCGGY	5 cut(s)	224, 305, 439, 886, 2042
BssMI	GATC	6 cut(s)	501, 514, 1504, 1852, 2263, 2383
BssNAI	GTATAC	1 cut(s)	2308
BssNI	GRCGYC	2 cut(s)	228, 693
BssT1I	CCWWGG	3 cut(s)	594, 1948, 1954
Bst1107I	GTATAC	1 cut(s)	2308
Bst4CI	ACNGT	8 cut(s)	220, 238, 411, 535, 1417, 1595, 1703, 1872
Bst6I	CTCTTC	2 cut(s)	1145, 1731
BstACI	GRCGYC	2 cut(s)	228, 693
BstAPI	GCANNNNNTGC	1 cut(s)	2375
BstAUI	TGTACA	1 cut(s)	1551
BstBAI	YACGTR	3 cut(s)	720, 1751, 1886
BstBI	TTCGAA	1 cut(s)	2276
BstC8I	GCNNGC	8 cut(s)	70, 226, 307, 441, 888, 1669, 2044, 2199
BstDEI	CTNAG	9 cut(s)	470, 572, 711, 1134, 1217, 1497, 1835, 2205, 2392
BstEII	GGTNACC	1 cut(s)	2291
BstF5I	GGATG	5 cut(s)	1279, 1507, 1531, 1549, 2287
BstFNI	CGCG	2 cut(s)	1004, 1578
BstH2I	RGCGCY	2 cut(s)	17, 2178
BstHHI	GCGC	4 cut(s)	16, 143, 769, 2177
BstKTI	GATC	6 cut(s)	504, 517, 1507, 1855, 2266, 2386
BstMAI	GTCTC	4 cut(s)	151, 499, 571, 2094
BstMBI	GATC	6 cut(s)	501, 514, 1504, 1852, 2263, 2383
BstMCI	CGRYCG	2 cut(s)	517, 1271
BstNSI	RCATGY	1 cut(s)	2237
BstPI	GGTNACC	1 cut(s)	2291
BstSFI	CTRYAG	3 cut(s)	99, 1400, 1914
BstUI	CGCG	2 cut(s)	1004, 1578
BstV1I	GCAGC	9 cut(s)	23, 125, 394, 1414, 1571, 1773, 1977, 2164, 2213
BstV2I	GAAGAC	1 cut(s)	674
BstX2I	RGATCY	1 cut(s)	501
BstXI	CCANNNNNNTGG	3 cut(s)	451, 787, 1955
BstYI	RGATCY	1 cut(s)	501
BstZ17I	GTATAC	1 cut(s)	2308
Bsu36I	CCTNAGG	1 cut(s)	1497
BsuI	GTATCC	1 cut(s)	2208
BtgZI	GCGATG	1 cut(s)	345
BtrI	CACGTC	1 cut(s)	1373
BtsCI	GGATG	5 cut(s)	1279, 1507, 1531, 1549, 2287
BtsI	GCAGTG	1 cut(s)	1397
BtsIMutI	CAGTG	5 cut(s)	478, 708, 1397, 1804, 1816
Cac8I	GCNNGC	8 cut(s)	70, 226, 307, 441, 888, 1669, 2044, 2199
CaiI	CAGNNNCTG	1 cut(s)	1634
CfoI	GCGC	4 cut(s)	16, 143, 769, 2177
Cfr10I	RCCGGY	5 cut(s)	224, 305, 439, 886, 2042
CseI	GACGC	2 cut(s)	217, 682
CsiI	ACCWGGT	1 cut(s)	1177
Csp6I	GTAC	5 cut(s)	985, 1000, 1552, 1842, 2069
CspCI	CAANNNNNGTGG	2 cut(s)	454, 489
CviAII	CATG	8 cut(s)	799, 916, 1672, 2075, 2161, 2234, 2255, 2324
CviQI	GTAC	5 cut(s)	985, 1000, 1552, 1842, 2069
DdeI	CTNAG	9 cut(s)	470, 572, 711, 1134, 1217, 1497, 1835, 2205, 2392
DpnI	GATC	6 cut(s)	503, 516, 1506, 1854, 2265, 2385
DpnII	GATC	6 cut(s)	501, 514, 1504, 1852, 2263, 2383
EaeI	YGGCCR	4 cut(s)	6, 441, 627, 1780
Eam1104I	CTCTTC	2 cut(s)	1145, 1731
EarI	CTCTTC	2 cut(s)	1145, 1731
EciI	GGCGGA	8 cut(s)	82, 292, 324, 330, 336, 366, 597, 746
Ecl136II	GAGCTC	1 cut(s)	616
Eco130I	CCWWGG	3 cut(s)	594, 1948, 1954
Eco147I	AGGCCT	1 cut(s)	1953
Eco24I	GRGCYC	1 cut(s)	618
Eco31I	GGTCTC	3 cut(s)	499, 571, 2094
Eco32I	GATATC	1 cut(s)	1075
Eco47I	GGWCC	7 cut(s)	24, 454, 540, 790, 967, 1820, 2135
Eco53kI	GAGCTC	1 cut(s)	616
Eco57I	CTGAAG	1 cut(s)	2042
Eco72I	CACGTG	3 cut(s)	720, 1751, 1886
Eco81I	CCTNAGG	1 cut(s)	1497
Eco91I	GGTNACC	1 cut(s)	2291
EcoICRI	GAGCTC	1 cut(s)	616
EcoO109I	RGGNCCY	1 cut(s)	24
EcoO65I	GGTNACC	1 cut(s)	2291
EcoRV	GATATC	1 cut(s)	1075
EcoT14I	CCWWGG	3 cut(s)	594, 1948, 1954
EcoT22I	ATGCAT	2 cut(s)	2122, 2245
EcoT38I	GRGCYC	1 cut(s)	618
ErhI	CCWWGG	3 cut(s)	594, 1948, 1954
Esp3I	CGTCTC	1 cut(s)	151
FaeI	CATG	8 cut(s)	802, 919, 1675, 2078, 2164, 2237, 2258, 2327
FaqI	GGGAC	6 cut(s)	437, 553, 980, 1426, 1628, 2242
FatI	CATG	8 cut(s)	798, 915, 1671, 2074, 2160, 2233, 2254, 2323
FauI	CCCGC	4 cut(s)	125, 277, 1568, 1660
FauNDI	CATATG	1 cut(s)	2335
FblI	GTMKAC	2 cut(s)	588, 2307
FokI	GGATG	5 cut(s)	1286, 1514, 1518, 1556, 2294
FriOI	GRGCYC	1 cut(s)	618
FspBI	CTAG	3 cut(s)	945, 1322, 2360
GlaI	GCGC	4 cut(s)	15, 142, 768, 2176
GsaI	CCCAGC	1 cut(s)	604
GsuI	CTGGAG	1 cut(s)	590
HaeII	RGCGCY	2 cut(s)	17, 2178
HgaI	GACGC	2 cut(s)	217, 682
HhaI	GCGC	4 cut(s)	16, 143, 769, 2177
Hin1I	GRCGYC	2 cut(s)	228, 693
Hin1II	CATG	8 cut(s)	802, 919, 1675, 2078, 2164, 2237, 2258, 2327
Hin6I	GCGC	4 cut(s)	14, 141, 767, 2175
HinP1I	GCGC	4 cut(s)	14, 141, 767, 2175
HincII	GTYRAC	4 cut(s)	1660, 1945, 1998, 2004
HindII	GTYRAC	4 cut(s)	1660, 1945, 1998, 2004
HindIII	AAGCTT	3 cut(s)	1106, 1310, 1517
HinfI	GANTC	9 cut(s)	193, 425, 548, 585, 961, 1138, 1261, 1606, 1806
HpaI	GTTAAC	2 cut(s)	1998, 2004
Hpy166II	GTNNAC	7 cut(s)	589, 1552, 1660, 1945, 1998, 2004, 2308
Hpy8I	GTNNAC	7 cut(s)	589, 1552, 1660, 1945, 1998, 2004, 2308
Hpy99I	CGWCG	6 cut(s)	212, 224, 404, 539, 683, 758
HpyCH4III	ACNGT	8 cut(s)	220, 238, 411, 535, 1417, 1595, 1703, 1872
HpyCH4IV	ACGT	7 cut(s)	207, 719, 753, 1372, 1750, 1885, 2000
HpyCH4V	TGCA	8 cut(s)	898, 955, 1402, 1531, 2120, 2201, 2243, 2249
HpyF3I	CTNAG	9 cut(s)	470, 572, 711, 1134, 1217, 1497, 1835, 2205, 2392
HpySE526I	ACGT	7 cut(s)	207, 719, 753, 1372, 1750, 1885, 2000
Hsp92I	GRCGYC	2 cut(s)	228, 693
Hsp92II	CATG	8 cut(s)	802, 919, 1675, 2078, 2164, 2237, 2258, 2327
HspAI	GCGC	4 cut(s)	14, 141, 767, 2175
KpnI	GGTACC	1 cut(s)	988
KroI	GCCGGC	5 cut(s)	224, 305, 439, 886, 2042
KroNI	GCCGGC	5 cut(s)	226, 307, 441, 888, 2044
KspAI	GTTAAC	2 cut(s)	1998, 2004
Kzo9I	GATC	6 cut(s)	501, 514, 1504, 1852, 2263, 2383
LmnI	GCTCC	6 cut(s)	528, 609, 895, 1176, 1356, 2402
Lsp1109I	GCAGC	9 cut(s)	23, 125, 394, 1414, 1571, 1773, 1977, 2164, 2213
LweI	GCATC	2 cut(s)	1540, 2107
MabI	ACCWGGT	1 cut(s)	1177
MaeI	CTAG	3 cut(s)	945, 1322, 2360
MaeII	ACGT	7 cut(s)	207, 719, 753, 1372, 1750, 1885, 2000
MaeIII	GTNAC	8 cut(s)	229, 238, 694, 1417, 1471, 2078, 2153, 2291
MalI	GATC	6 cut(s)	503, 516, 1506, 1854, 2265, 2385
MbiI	CCGCTC	2 cut(s)	68, 1667
MboI	GATC	6 cut(s)	501, 514, 1504, 1852, 2263, 2383
MfeI	CAATTG	1 cut(s)	631
MflI	RGATCY	1 cut(s)	501
MhlI	GDGCHC	4 cut(s)	533, 618, 719, 1012
MlsI	TGGCCA	2 cut(s)	629, 1782
MluI	ACGCGT	1 cut(s)	1002
MluNI	TGGCCA	2 cut(s)	629, 1782
MlyI	GAGTC	5 cut(s)	419, 542, 594, 1615, 1815
MmeI	TCCRAC	3 cut(s)	1198, 1850, 2077
Mox20I	TGGCCA	2 cut(s)	629, 1782
Mph1103I	ATGCAT	2 cut(s)	2122, 2245
MreI	CGCCGGCG	2 cut(s)	224, 305
MroNI	GCCGGC	5 cut(s)	224, 305, 439, 886, 2042
MscI	TGGCCA	2 cut(s)	629, 1782
MseI	TTAA	6 cut(s)	920, 1191, 1314, 1515, 1997, 2003
MslI	CAYNNNNRTG	5 cut(s)	785, 1256, 2085, 2238, 2259
Msp20I	TGGCCA	2 cut(s)	629, 1782
MspA1I	CMGCKG	4 cut(s)	385, 1084, 2020, 2204
MunI	CAATTG	1 cut(s)	631
Mva1269I	GAATGC	1 cut(s)	400
MvnI	CGCG	2 cut(s)	1004, 1578
NaeI	GCCGGC	5 cut(s)	226, 307, 441, 888, 2044
NciI	CCSGG	3 cut(s)	579, 794, 971
NdeI	CATATG	1 cut(s)	2335
NdeII	GATC	6 cut(s)	501, 514, 1504, 1852, 2263, 2383
NgoMIV	GCCGGC	5 cut(s)	224, 305, 439, 886, 2042
NlaIII	CATG	8 cut(s)	802, 919, 1675, 2078, 2164, 2237, 2258, 2327
NlaIV	GGNNCC	9 cut(s)	541, 685, 792, 833, 891, 968, 986, 2041, 2398
NmeAIII	GCCGAG	1 cut(s)	669
NmuCI	GTSAC	4 cut(s)	229, 238, 694, 2078
NsiI	ATGCAT	2 cut(s)	2122, 2245
NspI	RCATGY	1 cut(s)	2237
NspV	TTCGAA	1 cut(s)	2276
OliI	CACNNNNGTG	1 cut(s)	2085
PceI	AGGCCT	1 cut(s)	1953
PciI	ACATGT	1 cut(s)	2233
PcsI	WCGNNNNNNNCGW	2 cut(s)	216, 651
PctI	GAATGC	1 cut(s)	400
PdiI	GCCGGC	5 cut(s)	226, 307, 441, 888, 2044
PfeI	GAWTC	4 cut(s)	193, 961, 1138, 1261
PfoI	TCCNGGA	1 cut(s)	1366
Ple19I	CGATCG	1 cut(s)	517
PleI	GAGTC	5 cut(s)	419, 542, 593, 1614, 1814
PmaCI	CACGTG	3 cut(s)	720, 1751, 1886
PmlI	CACGTG	3 cut(s)	720, 1751, 1886
PpsI	GAGTC	5 cut(s)	419, 542, 593, 1614, 1814
Ppu21I	YACGTR	3 cut(s)	720, 1751, 1886
PpuMI	RGGWCCY	1 cut(s)	24
PscI	ACATGT	1 cut(s)	2233
Psp124BI	GAGCTC	1 cut(s)	618
Psp1406I	AACGTT	1 cut(s)	2000
Psp5II	RGGWCCY	1 cut(s)	24
PspCI	CACGTG	3 cut(s)	720, 1751, 1886
PspEI	GGTNACC	1 cut(s)	2291
PspFI	CCCAGC	1 cut(s)	600
PspN4I	GGNNCC	9 cut(s)	541, 685, 792, 833, 891, 968, 986, 2041, 2398
PspPPI	RGGWCCY	1 cut(s)	24
PstI	CTGCAG	1 cut(s)	1404
PstNI	CAGNNNCTG	1 cut(s)	1634
PsuI	RGATCY	1 cut(s)	501
PvuI	CGATCG	1 cut(s)	517
PvuII	CAGCTG	4 cut(s)	385, 1084, 2020, 2204
RsaI	GTAC	5 cut(s)	986, 1001, 1553, 1843, 2070
RsaNI	GTAC	5 cut(s)	985, 1000, 1552, 1842, 2069
RseI	CAYNNNNRTG	5 cut(s)	785, 1256, 2085, 2238, 2259
SacI	GAGCTC	1 cut(s)	618
SaqAI	TTAA	6 cut(s)	920, 1191, 1314, 1515, 1997, 2003
Sau3AI	GATC	6 cut(s)	501, 514, 1504, 1852, 2263, 2383
SchI	GAGTC	5 cut(s)	419, 542, 594, 1615, 1815
SduI	GDGCHC	4 cut(s)	533, 618, 719, 1012
SexAI	ACCWGGT	1 cut(s)	1177
SfaNI	GCATC	2 cut(s)	1540, 2107
SfcI	CTRYAG	3 cut(s)	99, 1400, 1914
SfuI	TTCGAA	1 cut(s)	2276
SgrAI	CRCCGGYG	2 cut(s)	224, 305
SinI	GGWCC	7 cut(s)	24, 454, 540, 790, 967, 1820, 2135
SmiMI	CAYNNNNRTG	5 cut(s)	785, 1256, 2085, 2238, 2259
SmlI	CTYRAG	4 cut(s)	256, 1011, 1520, 2192
SmoI	CTYRAG	4 cut(s)	256, 1011, 1520, 2192
SseBI	AGGCCT	1 cut(s)	1953
SspMI	CTAG	3 cut(s)	945, 1322, 2360
SstI	GAGCTC	1 cut(s)	618
StuI	AGGCCT	1 cut(s)	1953
StyI	CCWWGG	3 cut(s)	594, 1948, 1954
TaaI	ACNGT	8 cut(s)	220, 238, 411, 535, 1417, 1595, 1703, 1872
TaiI	ACGT	7 cut(s)	210, 722, 756, 1375, 1753, 1888, 2003
TaqI	TCGA	8 cut(s)	513, 618, 645, 654, 783, 1432, 1597, 2276
TaqII	GACCGA	2 cut(s)	557, 1677
TatI	WGTACW	2 cut(s)	1551, 2068
TfiI	GAWTC	4 cut(s)	193, 961, 1138, 1261
Tru1I	TTAA	6 cut(s)	920, 1191, 1314, 1515, 1997, 2003
Tru9I	TTAA	6 cut(s)	920, 1191, 1314, 1515, 1997, 2003
TscAI	CASTG	5 cut(s)	478, 715, 1404, 1804, 1816
TseFI	GTSAC	4 cut(s)	229, 238, 694, 2078
TseI	GCWGC	9 cut(s)	11, 138, 382, 1402, 1584, 1761, 1965, 2177, 2201
Tsp45I	GTSAC	4 cut(s)	229, 238, 694, 2078
TspDTI	ATGAA	5 cut(s)	1299, 1653, 1688, 1770, 2063
TspGWI	ACGGA	3 cut(s)	447, 1364, 2227
TspRI	CASTG	5 cut(s)	478, 715, 1404, 1804, 1816
VpaK11BI	GGWCC	7 cut(s)	24, 454, 540, 790, 967, 1820, 2135
XapI	RAATTY	3 cut(s)	1030, 1693, 1712
XceI	RCATGY	1 cut(s)	2237
XmiI	GTMKAC	2 cut(s)	588, 2307
XspI	CTAG	3 cut(s)	945, 1322, 2360
Zsp2I	ATGCAT	2 cut(s)	2122, 2245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.