Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0032876.1

Orthogroup ID

OG0004162

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1064

Gene Structure 1064 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0032876.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

aatttgagccgtcagagcaaattcacttatggtcttgtgatggaagagataaccacacgtgatgaacaaaatcatatatgttcaaatggccaaagagtgctgcccagtggaggtgtcagtgaagatggacctccaacaactctcagcggtactggcattgaccatgtggcatttttacagtcaaatatcacacatgacaacaccaagtttgtgaatggaaccttagttggtgagaggaatgtgtttcaggttgaccaaggccttggcattggcagcaagtttccattcttcaaccgccaccagttatcattaacaagatttttccagctgaaggaagtggaggaaggtgctggcaaaccaccaccacctgttcttgtacttcatggtcactatggtggctgtgttggagaccttccaagttatgatgcatttacccttgggggtccatattctgtgagaggttacaacatgggtgagataggcgccgctagacatatcctcgaggtaggagctactttagccacaatcctttgtttattcgctcattccctatttcattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006605 GO:0006810 GO:0006886 GO:0006996 GO:0007275 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009653 GO:0009657 GO:0009658 GO:0009662 GO:0009707 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009941 GO:0009987 GO:0010006 GO:0010033 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019867 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031350 GO:0031351 GO:0031354 GO:0031355 GO:0031358 GO:0031359 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0048598 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0061927 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072596 GO:0072598 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bac_surface_Ag

Protein Analysis

186

Amino Acids

20.16

Weight (kDa)

6.12

Isoelectric Point (pI)

43.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004162)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46740 AT4G09080 AT4G09080 AT4G09080
fragaria_vesca	FvH4_3g28760 FvH4_3g28760 FvH4_3g28760 FvH4_5g29410
malus_domestica	MD03G1086500.v1.1 MD11G1095600.v1.1
prunus_persica	Prupe.6G071100_v2.0.a1
pyrus_communis	pycom03g06860 pycom11g08100 pycom11g08110
rosa_chinensis	RchiOBHm_Chr5g0052291 RchiOBHm_Chr7g0222311
rosa_laevigata	RLG00000002071 RLG00000034828
rosa_multiflora	Rmu_sc0007069.1_g000009 Rmu_sc0028377.1_g000001 Rmu_sc0032875.1_g000001 Rmu_sc0032876.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028120 Rroxscaffold_3G00237120
rosa_rugosa	Rorug05G0273100 Rorug07G0207600
rosa_samantha	Rh5CG382000 Rh5DG371900 Rh7AG349900 Rh7DG346100
rosa_wichuraiana	Rw5G032630 Rw5G032670 Rw7G029530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	500
AccB1I	GGYRCC	1 cut(s)	482
AciI	CCGC	3 cut(s)	147, 295, 486
AcoI	YGGCCR	1 cut(s)	88
AcsI	RAATTY	1 cut(s)	20
AcuI	CTGAAG	1 cut(s)	350
AcvI	CACGTG	1 cut(s)	59
AcyI	GRCGYC	1 cut(s)	483
AfaI	GTAC	2 cut(s)	151, 378
AfiI	CCNNNNNNNGG	2 cut(s)	110, 331
AflIII	ACRYGT	1 cut(s)	56
AgsI	TTSAA	2 cut(s)	84, 292
AleI	CACNNNNGTG	1 cut(s)	393
AluBI	AGCT	2 cut(s)	328, 512
AluI	AGCT	2 cut(s)	328, 512
Alw26I	GTCTC	1 cut(s)	402
Ama87I	CYCGRG	1 cut(s)	500
AoxI	GGCC	2 cut(s)	88, 259
ApeKI	GCWGC	2 cut(s)	100, 273
ApoI	RAATTY	1 cut(s)	20
AspLEI	GCGC	1 cut(s)	485
AspS9I	GGNCC	2 cut(s)	128, 443
AsuHPI	GGTGA	2 cut(s)	242, 485
AvaI	CYCGRG	1 cut(s)	500
AvaII	GGWCC	2 cut(s)	128, 443
BalI	TGGCCA	1 cut(s)	90
BanI	GGYRCC	1 cut(s)	482
BbrPI	CACGTG	1 cut(s)	59
BbvI	GCAGC	2 cut(s)	87, 285
BccI	CCATC	2 cut(s)	34, 119
BcoDI	GTCTC	1 cut(s)	402
BfaI	CTAG	1 cut(s)	489
BfoI	RGCGCY	1 cut(s)	486
BisI	GCNGC	3 cut(s)	101, 274, 486
BlsI	GCNGC	3 cut(s)	102, 275, 487
Bme18I	GGWCC	2 cut(s)	128, 443
BmeT110I	CYCGRG	1 cut(s)	500
BmgT120I	GGNCC	2 cut(s)	128, 443
BmiI	GGNNCC	3 cut(s)	220, 444, 484
BmrI	ACTGGG	1 cut(s)	99
BmsI	GCATC	1 cut(s)	415
BmuI	ACTGGG	1 cut(s)	99
BsaAI	YACGTR	1 cut(s)	59
BsaHI	GRCGYC	1 cut(s)	483
BsaI	GGTCTC	1 cut(s)	402
BsaJI	CCNNGG	3 cut(s)	256, 262, 436
Bsc4I	CCNNNNNNNGG	2 cut(s)	110, 331
Bse1I	ACTGG	3 cut(s)	105, 157, 301
BseDI	CCNNGG	3 cut(s)	256, 262, 436
BseLI	CCNNNNNNNGG	2 cut(s)	110, 331
BseMII	CTCAG	1 cut(s)	157
BseNI	ACTGG	3 cut(s)	105, 157, 301
BseXI	GCAGC	2 cut(s)	87, 285
BshFI	GGCC	2 cut(s)	90, 261
BshNI	GGYRCC	1 cut(s)	482
BsiHKCI	CYCGRG	1 cut(s)	500
BslI	CCNNNNNNNGG	2 cut(s)	110, 331
BsmAI	GTCTC	1 cut(s)	402
BsnI	GGCC	2 cut(s)	90, 261
Bso31I	GGTCTC	1 cut(s)	402
BsoBI	CYCGRG	1 cut(s)	500
BspACI	CCGC	3 cut(s)	147, 295, 486
BspANI	GGCC	2 cut(s)	90, 261
BspCNI	CTCAG	1 cut(s)	156
BspLI	GGNNCC	3 cut(s)	220, 444, 484
BspT107I	GGYRCC	1 cut(s)	482
BspTNI	GGTCTC	1 cut(s)	402
BsrI	ACTGG	3 cut(s)	105, 157, 301
BssECI	CCNNGG	3 cut(s)	256, 262, 436
BssNI	GRCGYC	1 cut(s)	483
BssT1I	CCWWGG	3 cut(s)	256, 262, 436
Bst4CI	ACNGT	1 cut(s)	180
Bst6I	CTCTTC	1 cut(s)	39
BstACI	GRCGYC	1 cut(s)	483
BstBAI	YACGTR	1 cut(s)	59
BstC8I	GCNNGC	1 cut(s)	352
BstDEI	CTNAG	2 cut(s)	143, 223
BstH2I	RGCGCY	1 cut(s)	486
BstHHI	GCGC	1 cut(s)	485
BstMAI	GTCTC	1 cut(s)	402
BstMWI	GCNNNNNNNGC	4 cut(s)	15, 153, 273, 518
BstV1I	GCAGC	2 cut(s)	87, 285
BstXI	CCANNNNNNTGG	1 cut(s)	263
BsuRI	GGCC	2 cut(s)	90, 261
BtsIMutI	CAGTG	2 cut(s)	112, 124
Cac8I	GCNNGC	1 cut(s)	352
CfoI	GCGC	1 cut(s)	485
Cfr13I	GGNCC	2 cut(s)	128, 443
Csp6I	GTAC	2 cut(s)	150, 377
CviAII	CATG	4 cut(s)	164, 194, 383, 469
CviJI	RGCY	7 cut(s)	9, 90, 261, 328, 399, 512, 521
CviKI_1	RGCY	7 cut(s)	9, 90, 261, 328, 399, 512, 521
CviQI	GTAC	2 cut(s)	150, 377
DdeI	CTNAG	2 cut(s)	143, 223
DinI	GGCGCC	1 cut(s)	484
EaeI	YGGCCR	1 cut(s)	88
Eam1104I	CTCTTC	1 cut(s)	39
EarI	CTCTTC	1 cut(s)	39
Eco130I	CCWWGG	3 cut(s)	256, 262, 436
Eco147I	AGGCCT	1 cut(s)	261
Eco31I	GGTCTC	1 cut(s)	402
Eco47I	GGWCC	2 cut(s)	128, 443
Eco57I	CTGAAG	1 cut(s)	350
Eco72I	CACGTG	1 cut(s)	59
Eco88I	CYCGRG	1 cut(s)	500
EcoT14I	CCWWGG	3 cut(s)	256, 262, 436
EcoT22I	ATGCAT	1 cut(s)	430
EgeI	GGCGCC	1 cut(s)	484
EheI	GGCGCC	1 cut(s)	484
ErhI	CCWWGG	3 cut(s)	256, 262, 436
FaeI	CATG	4 cut(s)	167, 197, 386, 472
FatI	CATG	4 cut(s)	163, 193, 382, 468
Fnu4HI	GCNGC	3 cut(s)	101, 274, 486
Fsp4HI	GCNGC	3 cut(s)	101, 274, 486
FspBI	CTAG	1 cut(s)	489
GlaI	GCGC	1 cut(s)	484
GluI	GCNGC	3 cut(s)	101, 274, 486
HaeII	RGCGCY	1 cut(s)	486
HaeIII	GGCC	2 cut(s)	90, 261
HhaI	GCGC	1 cut(s)	485
Hin1I	GRCGYC	1 cut(s)	483
Hin1II	CATG	4 cut(s)	167, 197, 386, 472
Hin6I	GCGC	1 cut(s)	483
HinP1I	GCGC	1 cut(s)	483
HincII	GTYRAC	1 cut(s)	253
HindII	GTYRAC	1 cut(s)	253
HphI	GGTGA	2 cut(s)	242, 485
Hpy166II	GTNNAC	1 cut(s)	253
Hpy188I	TCNGA	1 cut(s)	15
Hpy8I	GTNNAC	1 cut(s)	253
HpyAV	CCTTC	3 cut(s)	325, 338, 422
HpyCH4III	ACNGT	1 cut(s)	180
HpyCH4IV	ACGT	1 cut(s)	58
HpyCH4V	TGCA	1 cut(s)	428
HpyF10VI	GCNNNNNNNGC	4 cut(s)	15, 153, 273, 518
HpyF3I	CTNAG	2 cut(s)	143, 223
HpySE526I	ACGT	1 cut(s)	58
Hsp92I	GRCGYC	1 cut(s)	483
Hsp92II	CATG	4 cut(s)	167, 197, 386, 472
HspAI	GCGC	1 cut(s)	483
KasI	GGCGCC	1 cut(s)	482
LmnI	GCTCC	1 cut(s)	509
LpnPI	CCDG	7 cut(s)	118, 138, 233, 314, 336, 338, 381
Lsp1109I	GCAGC	2 cut(s)	87, 285
LweI	GCATC	1 cut(s)	415
MaeI	CTAG	1 cut(s)	489
MaeII	ACGT	1 cut(s)	58
MaeIII	GTNAC	2 cut(s)	386, 461
MboII	GAAGA	3 cut(s)	56, 134, 280
MlsI	TGGCCA	1 cut(s)	90
MluCI	AATT	1 cut(s)	20
MluNI	TGGCCA	1 cut(s)	90
Mly113I	GGCGCC	1 cut(s)	483
MmeI	TCCRAC	2 cut(s)	158, 385
MnlI	CCTC	7 cut(s)	104, 141, 228, 334, 452, 496, 509
Mox20I	TGGCCA	1 cut(s)	90
Mph1103I	ATGCAT	1 cut(s)	430
MscI	TGGCCA	1 cut(s)	90
MseI	TTAA	1 cut(s)	311
MslI	CAYNNNNRTG	1 cut(s)	393
Msp20I	TGGCCA	1 cut(s)	90
MspA1I	CMGCKG	2 cut(s)	147, 328
MwoI	GCNNNNNNNGC	4 cut(s)	15, 153, 273, 518
NarI	GGCGCC	1 cut(s)	483
NlaIII	CATG	4 cut(s)	167, 197, 386, 472
NlaIV	GGNNCC	3 cut(s)	220, 444, 484
NmuCI	GTSAC	1 cut(s)	386
NsiI	ATGCAT	1 cut(s)	430
OliI	CACNNNNGTG	1 cut(s)	393
PaeR7I	CTCGAG	1 cut(s)	500
PceI	AGGCCT	1 cut(s)	261
PkrI	GCNGC	3 cut(s)	102, 275, 487
PluTI	GGCGCC	1 cut(s)	486
PmaCI	CACGTG	1 cut(s)	59
PmlI	CACGTG	1 cut(s)	59
Ppu21I	YACGTR	1 cut(s)	59
PspCI	CACGTG	1 cut(s)	59
PspN4I	GGNNCC	3 cut(s)	220, 444, 484
PspPI	GGNCC	2 cut(s)	128, 443
PspXI	VCTCGAGB	1 cut(s)	500
PvuII	CAGCTG	1 cut(s)	328
RsaI	GTAC	2 cut(s)	151, 378
RsaNI	GTAC	2 cut(s)	150, 377
RseI	CAYNNNNRTG	1 cut(s)	393
SaqAI	TTAA	1 cut(s)	311
SatI	GCNGC	3 cut(s)	101, 274, 486
Sau96I	GGNCC	2 cut(s)	128, 443
SfaNI	GCATC	1 cut(s)	415
SfoI	GGCGCC	1 cut(s)	484
Sfr274I	CTCGAG	1 cut(s)	500
SinI	GGWCC	2 cut(s)	128, 443
SlaI	CTCGAG	1 cut(s)	500
SmiMI	CAYNNNNRTG	1 cut(s)	393
SmlI	CTYRAG	1 cut(s)	500
SmoI	CTYRAG	1 cut(s)	500
Sse9I	AATT	1 cut(s)	20
SseBI	AGGCCT	1 cut(s)	261
SsiI	CCGC	3 cut(s)	147, 295, 486
SspDI	GGCGCC	1 cut(s)	482
SspMI	CTAG	1 cut(s)	489
StuI	AGGCCT	1 cut(s)	261
StyI	CCWWGG	3 cut(s)	256, 262, 436
TaaI	ACNGT	1 cut(s)	180
TaiI	ACGT	1 cut(s)	61
TaqI	TCGA	1 cut(s)	501
TasI	AATT	1 cut(s)	20
TatI	WGTACW	1 cut(s)	376
TauI	GCSGC	1 cut(s)	488
Tru1I	TTAA	1 cut(s)	311
Tru9I	TTAA	1 cut(s)	311
TscAI	CASTG	2 cut(s)	112, 124
TseFI	GTSAC	1 cut(s)	386
TseI	GCWGC	2 cut(s)	100, 273
Tsp45I	GTSAC	1 cut(s)	386
TspDTI	ATGAA	3 cut(s)	78, 371, 545
TspRI	CASTG	2 cut(s)	112, 124
VpaK11BI	GGWCC	2 cut(s)	128, 443
XapI	RAATTY	1 cut(s)	20
XhoI	CTCGAG	1 cut(s)	500
XspI	CTAG	1 cut(s)	489
Zsp2I	ATGCAT	1 cut(s)	430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.