Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0004162

Physical Location & Seq

Genomic Coordinates Forward (+)

20388930 .. 20393986

Gene Structure 5057 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g29410.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2436 bp

ATGTTGGCAGCAGCGCCGCCCAGGACCTACCGCACCCCCACCAGTCTCTCCTCCTCCTCCTCCCCATCCGCCGCTCGCAAATTAGCCACGCCTTCCTCCTCCGCCGCAGCACCAGCCACCAACAACACCCGCGCCCTAATCGTCAAATGCTGCGCCGTCTCTCCCTCCTCCCAAAACCCTAAACCCTCTCCCAATCTCCTCCAAAACGTCGCCAAAACCATCGCCGGGGTCACCACCGTCTCCCTCGTCTTGAACCTCAGCAACTTCCCCGCCCTCATCGGCTCCGGCGGCGGTAATTCCGGCGGCGGAGGTGGCGGCGGCGGAGGAGGTGGAGGTGGAGATGGTTCCAGCGGAGGGTTCTGGAGGAGTCTGTTCGGGCCGCAGCTGGTGGCGAATGCTGACGAGGCACAGTCGCCGGAGTGGGACTCTCACGGATTGCCGGCCAATATTGTGGTCCAGCTCAACAAGCTCAGTGGCTTCAAGAAGTACAAGGTCTCCGAGATCTTGTTCTTCGATCGGAGGCGGTGGAGCACCGTCGGCACGGAGGACTCGTTTTTCGAAATGGTCTCCCTCAGACCCGGCGGAGTCTACACCAAGGCTCAGCTGCAGAAAGAGCTCGAGACCTTGGCCAATTGCGGAATGTTCGAGAAGGTTGATCTGGAAGGGAAGACCAACCCGGACGGCACCCTCGGCGTCACCATTTCCTTCACGGAGAGCACGTGGCAGTCGGCGGACAAGTTCCGGTGCATTAATGTAGGCCTCATGGCGCAGTCCAAGCCTATTGAAATGGACCCGGACATGACTGATAAGGAGAAGATGGAGTATTTCAGGAACCAGGAGAAGGATTACAAGAGGAGGATCGATAGGGCCAGGCCGTGTTTGTTGCCCCCTCCCGTGCAGAGGGAGGTCTTGCTTATGTTGAGAGAGCAAGGGAAGGTGAGTGCCAGGCTGTTGCAGAAGATTCGGGACCGGGTTCAGAGATGGTACCAAGATGAGGGATATGCGTGTGCTCAAGTTGTCAATTTCGGGAATTTGAACACTAAGGAGGTTGTGTGTGAAGTGGTCGAAGGAGATATCACACAGCTGGTTATTCAGTTCCAGGATAAGCTTGGCAATTTTGTGGAGGGGAACACTCAGATTCCTGTGGTGAAGAGAGAATTGCCCAGACAGCTCCGACCAGGTTATGTCTTTAATATAGAAGCAGGGAAACAAGCTCTGAGGAACATAAACTCCCTGGCACTGTTTTCAAACATTGAAGTGAATCCACGACCGGACGAGAAGAATGAAGGAGGGATAATTGTTGAAATAAAGCTTAAAGAACTAGAACAGAAAACCGCGGAAGTCAGCACAGAATGGAGCATCGTTCCTGGACGTGGTGGTTATCCCACTTTGGCTTCACTGCAGCCTGGTGGAACTGTTACCTTTGAACATCGAAATCTCAAAGGGTTGAATAGGTCTATTCTCGGTTCAGTAACCACTAGCAACTTTTACAACCCTCAGGATGATCTTGCTTTTAAACTTGAGTATGTGCATCCATATCTGGATGGTGTGTACAATCCTCGCAATCGTGCTCTCCGTGTAAGCTGCTTTAACAGTCGCAAATTGAGTCCAGTCTTCACCGGTGGGCCAGGGGCTGATGAAGTCCCCCCTATATGGGTTGACCGAGCTGGCATGAAAGCTAATATAACAGAGAATTTCAACCGTCAGAGCAAATTCACTTATGGACTCGTAATGGAAGAGATAACAACACGTGATGAACGTAGCCATATTTGTTCAAATGGCCAAAGAGTGTTGCCCAGTGGTGGAGTCAGTGAAGATGGACCTCCAACAACCCTGAGTGGTACGGGCATTGATCGTGTGGCATTTATACAGTCAAATATCACGCGTGATAACACCAAGTTTGTGAATGGAACTATAGTTGGTGAGAGGAATGTGTTTCAGGTTGACCAAGGCCTAGGCATTGGCAGCAAGTTTCCATTCTTCAACCGCCACCAGCTAACATTAACAAGATTTTTCCAGCTGAAGGAAGTAGAGGAAGGTGCCGGCAAACCACCACCACCTGTCCTTGTTCTTCACGGTCACTATGGTGGCTGTGTCGGGGACCTTCCAAGTTATGATGCATTTACTCTTGGAGGTCCATATTCTGTGAGAGGTTACAACATGGGTGAAATAGGGGCGGCCAGGCAAATCCTGGAGCTTGCAGCTGAGCTACGGATACCGGTAAAGGGTACACATGTATATGCATTTGCAGAACATGGCAACGATCTTGGAAGTTCGAAGGATGTCAAGGGTAACCCGACAGAGGTATATAGGCGAGTGGGTCATGGGTCATCATATGGTGTTGGTGTCAAGTTAGGTCTAGTAAGAGCGGAATATGCTGTGGATCACAACTCGGGCACAGGTTCAGTATTCTTCCGATTTGGTGAGAGATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006605 GO:0006810 GO:0006886 GO:0006996 GO:0007275 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009653 GO:0009657 GO:0009658 GO:0009662 GO:0009707 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009941 GO:0009987 GO:0010006 GO:0010033 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019867 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031350 GO:0031351 GO:0031354 GO:0031355 GO:0031358 GO:0031359 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0048598 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0061927 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072596 GO:0072598 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bac_surface_Ag

Protein Analysis

812

Amino Acids

88.42

Weight (kDa)

8.83

Isoelectric Point (pI)

44.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
POTRA1_3_Toc75	PF25282	147 - 238	8.4e-41	Toc75-like, POTRA domain
POTRA2_Toc75	PF25280	247 - 358	1.1e-58	Toc75-like, second POTRA domain
POTRA1_3_Toc75	PF25282	359 - 440	1.7e-30	Toc75-like, POTRA domain
Omp85	PF01103	479 - 811	2.2e-19	Omp85 superfamily domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004162)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46740 AT4G09080 AT4G09080 AT4G09080
fragaria_vesca	FvH4_3g28760 FvH4_3g28760 FvH4_3g28760 FvH4_5g29410
malus_domestica	MD03G1086500.v1.1 MD11G1095600.v1.1
prunus_persica	Prupe.6G071100_v2.0.a1
pyrus_communis	pycom03g06860 pycom11g08100 pycom11g08110
rosa_chinensis	RchiOBHm_Chr5g0052291 RchiOBHm_Chr7g0222311
rosa_laevigata	RLG00000002071 RLG00000034828
rosa_multiflora	Rmu_sc0007069.1_g000009 Rmu_sc0028377.1_g000001 Rmu_sc0032875.1_g000001 Rmu_sc0032876.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028120 Rroxscaffold_3G00237120
rosa_rugosa	Rorug05G0273100 Rorug07G0207600
rosa_samantha	Rh5CG382000 Rh5DG371900 Rh7AG349900 Rh7DG346100
rosa_wichuraiana	Rw5G032630 Rw5G032670 Rw7G029530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	984
AccB1I	GGYRCC	3 cut(s)	683, 984, 2039
AccBSI	CCGCTC	2 cut(s)	74, 2369
AccI	GTMKAC	1 cut(s)	588
AccII	CGCG	3 cut(s)	132, 1337, 1885
AclWI	GGATC	2 cut(s)	866, 2391
AcoI	YGGCCR	4 cut(s)	441, 627, 1780, 2178
AcsI	RAATTY	3 cut(s)	1030, 1693, 1712
AcuI	CTGAAG	1 cut(s)	2042
AcvI	CACGTG	2 cut(s)	720, 1751
AcyI	GRCGYC	1 cut(s)	693
AfaI	GTAC	5 cut(s)	488, 986, 1553, 1843, 2230
AflIII	ACRYGT	3 cut(s)	1748, 1883, 2233
AgeI	ACCGGT	2 cut(s)	1619, 2218
AjiI	CACGTC	1 cut(s)	1373
AleI	CACNNNNGTG	1 cut(s)	2085
AloI	GAACNNNNNNTCC	2 cut(s)	1214, 1246
Alw21I	GWGCWC	5 cut(s)	533, 618, 719, 1012, 1573
Alw26I	GTCTC	6 cut(s)	50, 163, 244, 499, 571, 614
AlwI	GGATC	2 cut(s)	866, 2391
AlwNI	CAGNNNCTG	1 cut(s)	1634
Ama87I	CYCGRG	2 cut(s)	617, 2392
ApoI	RAATTY	3 cut(s)	1030, 1693, 1712
ArsI	GACNNNNNNTTYG	2 cut(s)	539, 571
AseI	ATTAAT	1 cut(s)	750
AsiGI	ACCGGT	2 cut(s)	1619, 2218
Asp718I	GGTACC	1 cut(s)	984
AspA2I	CCTAGG	1 cut(s)	1954
AspLEI	GCGC	4 cut(s)	16, 134, 155, 769
AsuC2I	CCSGG	5 cut(s)	226, 579, 677, 794, 971
AsuHPI	GGTGA	8 cut(s)	223, 688, 949, 1159, 1609, 1934, 2177, 2435
AsuII	TTCGAA	2 cut(s)	558, 2276
AvaI	CYCGRG	2 cut(s)	617, 2392
AvaII	GGWCC	7 cut(s)	24, 454, 790, 967, 1820, 2101, 2135
AvrII	CCTAGG	1 cut(s)	1954
AxyI	CCTNAGG	1 cut(s)	1497
BaeGI	GKGCMC	1 cut(s)	2399
BaeI	ACNNNNGTAYC	2 cut(s)	2220, 2253
BalI	TGGCCA	2 cut(s)	629, 1782
BanI	GGYRCC	3 cut(s)	683, 984, 2039
BanII	GRGCYC	1 cut(s)	618
BbrPI	CACGTG	2 cut(s)	720, 1751
BbsI	GAAGAC	2 cut(s)	674, 1606
Bbv12I	GWGCWC	5 cut(s)	533, 618, 719, 1012, 1573
BbvCI	CCTCAGC	1 cut(s)	257
BccI	CCATC	7 cut(s)	73, 227, 335, 811, 975, 1538, 1811
BceAI	ACGGC	3 cut(s)	140, 697, 859
BcgI	CGANNNNNNTGC	2 cut(s)	944, 978
BciVI	GTATCC	1 cut(s)	2208
BcnI	CCSGG	5 cut(s)	226, 579, 677, 794, 971
BcoDI	GTCTC	6 cut(s)	50, 163, 244, 499, 571, 614
BfaI	CTAG	4 cut(s)	1322, 1479, 1955, 2360
BfmI	CTRYAG	3 cut(s)	605, 1400, 1914
BfoI	RGCGCY	1 cut(s)	17
BfuI	GTATCC	1 cut(s)	2208
BglII	AGATCT	1 cut(s)	501
BlnI	CCTAGG	1 cut(s)	1954
BlpI	GCTNAGC	2 cut(s)	600, 2205
Bme18I	GGWCC	7 cut(s)	24, 454, 790, 967, 1820, 2101, 2135
BmeT110I	CYCGRG	2 cut(s)	617, 2392
BmgBI	CACGTC	1 cut(s)	1373
BmiI	GGNNCC	9 cut(s)	283, 346, 685, 792, 833, 968, 986, 2041, 2102
BmrI	ACTGGG	1 cut(s)	1791
BmsI	GCATC	3 cut(s)	1368, 1540, 2107
BmuI	ACTGGG	1 cut(s)	1791
BpiI	GAAGAC	2 cut(s)	674, 1606
BplI	GAGNNNNNCTC	2 cut(s)	410, 442
BpmI	CTGGAG	2 cut(s)	382, 2213
Bpu10I	CCTNAGC	1 cut(s)	257
Bpu1102I	GCTNAGC	2 cut(s)	600, 2205
Bpu14I	TTCGAA	2 cut(s)	558, 2276
BpuEI	CTTGAG	2 cut(s)	996, 1541
BpuMI	CCSGG	5 cut(s)	226, 579, 677, 794, 971
Bsa29I	ATCGAT	1 cut(s)	861
BsaAI	YACGTR	2 cut(s)	720, 1751
BsaHI	GRCGYC	1 cut(s)	693
BsaI	GGTCTC	3 cut(s)	499, 571, 614
BsaWI	WCCGGW	4 cut(s)	741, 1270, 1619, 2218
Bse118I	RCCGGY	4 cut(s)	439, 1619, 2042, 2218
Bse1I	ACTGG	3 cut(s)	42, 1610, 1797
Bse21I	CCTNAGG	1 cut(s)	1497
BseCI	ATCGAT	1 cut(s)	861
BseGI	GGATG	5 cut(s)	65, 1507, 1531, 1549, 2287
BseMII	CTCAG	9 cut(s)	271, 484, 586, 614, 1148, 1208, 1511, 1826, 2196
BseNI	ACTGG	3 cut(s)	42, 1610, 1797
BseSI	GKGCMC	1 cut(s)	2399
BsgI	GTGCAG	1 cut(s)	917
Bsh1236I	CGCG	3 cut(s)	132, 1337, 1885
Bsh1285I	CGRYCG	2 cut(s)	517, 1271
BshNI	GGYRCC	3 cut(s)	683, 984, 2039
BshTI	ACCGGT	2 cut(s)	1619, 2218
BshVI	ATCGAT	1 cut(s)	861
BsiEI	CGRYCG	2 cut(s)	517, 1271
BsiHKAI	GWGCWC	5 cut(s)	533, 618, 719, 1012, 1573
BsiHKCI	CYCGRG	2 cut(s)	617, 2392
BslFI	GGGAC	4 cut(s)	437, 980, 1628, 2114
BsmAI	GTCTC	6 cut(s)	50, 163, 244, 499, 571, 614
BsmBI	CGTCTC	2 cut(s)	163, 244
BsmFI	GGGAC	4 cut(s)	437, 980, 1628, 2114
BsmI	GAATGC	1 cut(s)	400
Bso31I	GGTCTC	3 cut(s)	499, 571, 614
BsoBI	CYCGRG	2 cut(s)	617, 2392
Bsp119I	TTCGAA	2 cut(s)	558, 2276
Bsp1286I	GDGCHC	6 cut(s)	533, 618, 719, 1012, 1573, 2399
Bsp1407I	TGTACA	1 cut(s)	1551
Bsp143I	GATC	8 cut(s)	501, 514, 655, 858, 1504, 1852, 2263, 2383
Bsp1720I	GCTNAGC	2 cut(s)	600, 2205
BspCNI	CTCAG	9 cut(s)	270, 483, 585, 613, 1147, 1209, 1510, 1827, 2197
BspDI	ATCGAT	1 cut(s)	861
BspFNI	CGCG	3 cut(s)	132, 1337, 1885
BspLI	GGNNCC	9 cut(s)	283, 346, 685, 792, 833, 968, 986, 2041, 2102
BspMAI	CTGCAG	2 cut(s)	609, 1404
BspPI	GGATC	2 cut(s)	866, 2391
BspT104I	TTCGAA	2 cut(s)	558, 2276
BspT107I	GGYRCC	3 cut(s)	683, 984, 2039
BspTNI	GGTCTC	3 cut(s)	499, 571, 614
BsrBI	CCGCTC	2 cut(s)	74, 2369
BsrFI	RCCGGY	4 cut(s)	439, 1619, 2042, 2218
BsrGI	TGTACA	1 cut(s)	1551
BsrI	ACTGG	3 cut(s)	42, 1610, 1797
BssAI	RCCGGY	4 cut(s)	439, 1619, 2042, 2218
BssMI	GATC	8 cut(s)	501, 514, 655, 858, 1504, 1852, 2263, 2383
BssNI	GRCGYC	1 cut(s)	693
BssT1I	CCWWGG	4 cut(s)	594, 624, 1948, 1954
Bst4CI	ACNGT	9 cut(s)	238, 411, 535, 1242, 1417, 1595, 1703, 1872, 2078
Bst6I	CTCTTC	2 cut(s)	1145, 1731
BstACI	GRCGYC	1 cut(s)	693
BstAUI	TGTACA	1 cut(s)	1551
BstBAI	YACGTR	2 cut(s)	720, 1751
BstBI	TTCGAA	2 cut(s)	558, 2276
BstC8I	GCNNGC	5 cut(s)	76, 441, 1669, 2044, 2199
BstDSI	CCRYGG	1 cut(s)	1335
BstEII	GGTNACC	2 cut(s)	229, 2291
BstF5I	GGATG	5 cut(s)	65, 1507, 1531, 1549, 2287
BstFNI	CGCG	3 cut(s)	132, 1337, 1885
BstH2I	RGCGCY	1 cut(s)	17
BstHHI	GCGC	4 cut(s)	16, 134, 155, 769
BstKTI	GATC	8 cut(s)	504, 517, 658, 861, 1507, 1855, 2266, 2386
BstMAI	GTCTC	6 cut(s)	50, 163, 244, 499, 571, 614
BstMBI	GATC	8 cut(s)	501, 514, 655, 858, 1504, 1852, 2263, 2383
BstMCI	CGRYCG	2 cut(s)	517, 1271
BstNSI	RCATGY	1 cut(s)	2237
BstPI	GGTNACC	2 cut(s)	229, 2291
BstSFI	CTRYAG	3 cut(s)	605, 1400, 1914
BstSLI	GKGCMC	1 cut(s)	2399
BstUI	CGCG	3 cut(s)	132, 1337, 1885
BstV2I	GAAGAC	2 cut(s)	674, 1606
BstX2I	RGATCY	1 cut(s)	501
BstXI	CCANNNNNNTGG	1 cut(s)	451
BstYI	RGATCY	1 cut(s)	501
Bsu15I	ATCGAT	1 cut(s)	861
Bsu36I	CCTNAGG	1 cut(s)	1497
BsuI	GTATCC	1 cut(s)	2208
BsuTUI	ATCGAT	1 cut(s)	861
BtgI	CCRYGG	1 cut(s)	1335
BtgZI	GCGATG	1 cut(s)	205
BtrI	CACGTC	1 cut(s)	1373
BtsCI	GGATG	5 cut(s)	65, 1507, 1531, 1549, 2287
BtsI	GCAGTG	1 cut(s)	1397
BtsIMutI	CAGTG	5 cut(s)	478, 1238, 1397, 1804, 1816
Cac8I	GCNNGC	5 cut(s)	76, 441, 1669, 2044, 2199
CaiI	CAGNNNCTG	1 cut(s)	1634
CfoI	GCGC	4 cut(s)	16, 134, 155, 769
Cfr10I	RCCGGY	4 cut(s)	439, 1619, 2042, 2218
Cfr42I	CCGCGG	1 cut(s)	1338
ClaI	ATCGAT	1 cut(s)	861
CseI	GACGC	1 cut(s)	682
CsiI	ACCWGGT	1 cut(s)	1177
Csp6I	GTAC	5 cut(s)	487, 985, 1552, 1842, 2229
CspAI	ACCGGT	2 cut(s)	1619, 2218
CspCI	CAANNNNNGTGG	2 cut(s)	454, 489
CviAII	CATG	7 cut(s)	763, 799, 1672, 2161, 2234, 2255, 2324
CviQI	GTAC	5 cut(s)	487, 985, 1552, 1842, 2229
DpnI	GATC	8 cut(s)	503, 516, 657, 860, 1506, 1854, 2265, 2385
DpnII	GATC	8 cut(s)	501, 514, 655, 858, 1504, 1852, 2263, 2383
DraI	TTTAAA	1 cut(s)	1516
EaeI	YGGCCR	4 cut(s)	441, 627, 1780, 2178
Eam1104I	CTCTTC	2 cut(s)	1145, 1731
EarI	CTCTTC	2 cut(s)	1145, 1731
EciI	GGCGGA	6 cut(s)	58, 91, 321, 336, 597, 746
Ecl136II	GAGCTC	1 cut(s)	616
Eco130I	CCWWGG	4 cut(s)	594, 624, 1948, 1954
Eco147I	AGGCCT	2 cut(s)	759, 1953
Eco24I	GRGCYC	1 cut(s)	618
Eco31I	GGTCTC	3 cut(s)	499, 571, 614
Eco32I	GATATC	1 cut(s)	1075
Eco47I	GGWCC	7 cut(s)	24, 454, 790, 967, 1820, 2101, 2135
Eco53kI	GAGCTC	1 cut(s)	616
Eco57I	CTGAAG	1 cut(s)	2042
Eco72I	CACGTG	2 cut(s)	720, 1751
Eco81I	CCTNAGG	1 cut(s)	1497
Eco88I	CYCGRG	2 cut(s)	617, 2392
Eco91I	GGTNACC	2 cut(s)	229, 2291
EcoICRI	GAGCTC	1 cut(s)	616
EcoO109I	RGGNCCY	2 cut(s)	24, 2101
EcoO65I	GGTNACC	2 cut(s)	229, 2291
EcoRV	GATATC	1 cut(s)	1075
EcoT14I	CCWWGG	4 cut(s)	594, 624, 1948, 1954
EcoT22I	ATGCAT	2 cut(s)	2122, 2245
EcoT38I	GRGCYC	1 cut(s)	618
ErhI	CCWWGG	4 cut(s)	594, 624, 1948, 1954
Esp3I	CGTCTC	2 cut(s)	163, 244
FaeI	CATG	7 cut(s)	766, 802, 1675, 2164, 2237, 2258, 2327
FaqI	GGGAC	4 cut(s)	437, 980, 1628, 2114
FatI	CATG	7 cut(s)	762, 798, 1671, 2160, 2233, 2254, 2323
FauI	CCCGC	2 cut(s)	137, 277
FauNDI	CATATG	1 cut(s)	2335
FblI	GTMKAC	1 cut(s)	588
FokI	GGATG	5 cut(s)	52, 1514, 1518, 1556, 2294
FriOI	GRGCYC	1 cut(s)	618
FspBI	CTAG	4 cut(s)	1322, 1479, 1955, 2360
GlaI	GCGC	4 cut(s)	15, 133, 154, 768
GsuI	CTGGAG	2 cut(s)	382, 2213
HaeII	RGCGCY	1 cut(s)	17
HgaI	GACGC	1 cut(s)	682
HhaI	GCGC	4 cut(s)	16, 134, 155, 769
Hin1I	GRCGYC	1 cut(s)	693
Hin1II	CATG	7 cut(s)	766, 802, 1675, 2164, 2237, 2258, 2327
Hin6I	GCGC	4 cut(s)	14, 132, 153, 767
HinP1I	GCGC	4 cut(s)	14, 132, 153, 767
HincII	GTYRAC	2 cut(s)	1660, 1945
HindII	GTYRAC	2 cut(s)	1660, 1945
HindIII	AAGCTT	2 cut(s)	1106, 1310
HphI	GGTGA	8 cut(s)	223, 688, 949, 1159, 1609, 1934, 2177, 2435
Hpy166II	GTNNAC	5 cut(s)	589, 1552, 1660, 1945, 2231
Hpy188I	TCNGA	9 cut(s)	499, 519, 575, 978, 1137, 1175, 1218, 1707, 2417
Hpy8I	GTNNAC	5 cut(s)	589, 1552, 1660, 1945, 2231
Hpy99I	CGWCG	2 cut(s)	212, 539
HpyCH4III	ACNGT	9 cut(s)	238, 411, 535, 1242, 1417, 1595, 1703, 1872, 2078
HpyCH4IV	ACGT	5 cut(s)	207, 719, 1372, 1750, 1759
HpySE526I	ACGT	5 cut(s)	207, 719, 1372, 1750, 1759
Hsp92I	GRCGYC	1 cut(s)	693
Hsp92II	CATG	7 cut(s)	766, 802, 1675, 2164, 2237, 2258, 2327
HspAI	GCGC	4 cut(s)	14, 132, 153, 767
KpnI	GGTACC	1 cut(s)	988
KroI	GCCGGC	2 cut(s)	439, 2042
KroNI	GCCGGC	2 cut(s)	441, 2044
KspI	CCGCGG	1 cut(s)	1338
Kzo9I	GATC	8 cut(s)	501, 514, 655, 858, 1504, 1852, 2263, 2383
LmnI	GCTCC	5 cut(s)	287, 528, 1176, 1356, 2194
LweI	GCATC	3 cut(s)	1368, 1540, 2107
MabI	ACCWGGT	1 cut(s)	1177
MaeI	CTAG	4 cut(s)	1322, 1479, 1955, 2360
MaeII	ACGT	5 cut(s)	207, 719, 1372, 1750, 1759
MaeIII	GTNAC	7 cut(s)	229, 694, 1417, 1471, 2078, 2153, 2291
MalI	GATC	8 cut(s)	503, 516, 657, 860, 1506, 1854, 2265, 2385
MbiI	CCGCTC	2 cut(s)	74, 2369
MboI	GATC	8 cut(s)	501, 514, 655, 858, 1504, 1852, 2263, 2383
MfeI	CAATTG	1 cut(s)	631
MflI	RGATCY	1 cut(s)	501
MhlI	GDGCHC	6 cut(s)	533, 618, 719, 1012, 1573, 2399
MlsI	TGGCCA	2 cut(s)	629, 1782
MluI	ACGCGT	1 cut(s)	1883
MluNI	TGGCCA	2 cut(s)	629, 1782
MlyI	GAGTC	7 cut(s)	376, 419, 542, 594, 1615, 1719, 1815
MmeI	TCCRAC	2 cut(s)	1198, 1850
Mox20I	TGGCCA	2 cut(s)	629, 1782
Mph1103I	ATGCAT	2 cut(s)	2122, 2245
MroNI	GCCGGC	2 cut(s)	439, 2042
MscI	TGGCCA	2 cut(s)	629, 1782
MseI	TTAA	6 cut(s)	750, 1191, 1314, 1515, 1590, 2003
MslI	CAYNNNNRTG	3 cut(s)	1256, 2085, 2238
Msp20I	TGGCCA	2 cut(s)	629, 1782
MspA1I	CMGCKG	7 cut(s)	351, 385, 604, 1084, 1337, 2020, 2204
MunI	CAATTG	1 cut(s)	631
Mva1269I	GAATGC	1 cut(s)	400
MvnI	CGCG	3 cut(s)	132, 1337, 1885
NaeI	GCCGGC	2 cut(s)	441, 2044
NciI	CCSGG	5 cut(s)	226, 579, 677, 794, 971
NdeI	CATATG	1 cut(s)	2335
NdeII	GATC	8 cut(s)	501, 514, 655, 858, 1504, 1852, 2263, 2383
NgoMIV	GCCGGC	2 cut(s)	439, 2042
NlaIII	CATG	7 cut(s)	766, 802, 1675, 2164, 2237, 2258, 2327
NlaIV	GGNNCC	9 cut(s)	283, 346, 685, 792, 833, 968, 986, 2041, 2102
NmeAIII	GCCGAG	1 cut(s)	669
NmuCI	GTSAC	3 cut(s)	229, 694, 2078
NsiI	ATGCAT	2 cut(s)	2122, 2245
NspI	RCATGY	1 cut(s)	2237
NspV	TTCGAA	2 cut(s)	558, 2276
OliI	CACNNNNGTG	1 cut(s)	2085
PaeR7I	CTCGAG	1 cut(s)	617
PceI	AGGCCT	2 cut(s)	759, 1953
PciI	ACATGT	1 cut(s)	2233
PcsI	WCGNNNNNNNCGW	4 cut(s)	548, 716, 1573, 1756
PctI	GAATGC	1 cut(s)	400
PdiI	GCCGGC	2 cut(s)	441, 2044
PfeI	GAWTC	3 cut(s)	961, 1138, 1261
PfoI	TCCNGGA	3 cut(s)	1098, 1366, 2190
PinAI	ACCGGT	2 cut(s)	1619, 2218
Ple19I	CGATCG	1 cut(s)	517
PleI	GAGTC	7 cut(s)	375, 419, 542, 593, 1614, 1719, 1814
PmaCI	CACGTG	2 cut(s)	720, 1751
PmlI	CACGTG	2 cut(s)	720, 1751
PpsI	GAGTC	7 cut(s)	375, 419, 542, 593, 1614, 1719, 1814
Ppu21I	YACGTR	2 cut(s)	720, 1751
PpuMI	RGGWCCY	2 cut(s)	24, 2101
PscI	ACATGT	1 cut(s)	2233
PshBI	ATTAAT	1 cut(s)	750
Psp124BI	GAGCTC	1 cut(s)	618
Psp5II	RGGWCCY	2 cut(s)	24, 2101
PspCI	CACGTG	2 cut(s)	720, 1751
PspEI	GGTNACC	2 cut(s)	229, 2291
PspN4I	GGNNCC	9 cut(s)	283, 346, 685, 792, 833, 968, 986, 2041, 2102
PspPPI	RGGWCCY	2 cut(s)	24, 2101
PstI	CTGCAG	2 cut(s)	609, 1404
PstNI	CAGNNNCTG	1 cut(s)	1634
PsuI	RGATCY	1 cut(s)	501
PvuI	CGATCG	1 cut(s)	517
PvuII	CAGCTG	5 cut(s)	385, 604, 1084, 2020, 2204
RsaI	GTAC	5 cut(s)	488, 986, 1553, 1843, 2230
RsaNI	GTAC	5 cut(s)	487, 985, 1552, 1842, 2229
RseI	CAYNNNNRTG	3 cut(s)	1256, 2085, 2238
SacI	GAGCTC	1 cut(s)	618
SacII	CCGCGG	1 cut(s)	1338
SaqAI	TTAA	6 cut(s)	750, 1191, 1314, 1515, 1590, 2003
Sau3AI	GATC	8 cut(s)	501, 514, 655, 858, 1504, 1852, 2263, 2383
SchI	GAGTC	7 cut(s)	376, 419, 542, 594, 1615, 1719, 1815
SduI	GDGCHC	6 cut(s)	533, 618, 719, 1012, 1573, 2399
SexAI	ACCWGGT	1 cut(s)	1177
SfaNI	GCATC	3 cut(s)	1368, 1540, 2107
SfcI	CTRYAG	3 cut(s)	605, 1400, 1914
Sfr274I	CTCGAG	1 cut(s)	617
Sfr303I	CCGCGG	1 cut(s)	1338
SfuI	TTCGAA	2 cut(s)	558, 2276
SgrAI	CRCCGGYG	1 cut(s)	1619
SgrBI	CCGCGG	1 cut(s)	1338
SinI	GGWCC	7 cut(s)	24, 454, 790, 967, 1820, 2101, 2135
SlaI	CTCGAG	1 cut(s)	617
SmiMI	CAYNNNNRTG	3 cut(s)	1256, 2085, 2238
SmlI	CTYRAG	3 cut(s)	617, 1011, 1520
SmoI	CTYRAG	3 cut(s)	617, 1011, 1520
SseBI	AGGCCT	2 cut(s)	759, 1953
SspI	AATATT	1 cut(s)	448
SspMI	CTAG	4 cut(s)	1322, 1479, 1955, 2360
SstI	GAGCTC	1 cut(s)	618
StuI	AGGCCT	2 cut(s)	759, 1953
StyI	CCWWGG	4 cut(s)	594, 624, 1948, 1954
TaaI	ACNGT	9 cut(s)	238, 411, 535, 1242, 1417, 1595, 1703, 1872, 2078
TaiI	ACGT	5 cut(s)	210, 722, 1375, 1753, 1762
TaqI	TCGA	8 cut(s)	513, 558, 618, 645, 861, 1065, 1432, 2276
TaqII	GACCGA	1 cut(s)	1677
TatI	WGTACW	2 cut(s)	486, 1551
TauI	GCSGC	9 cut(s)	19, 74, 107, 291, 306, 318, 321, 382, 2180
TfiI	GAWTC	3 cut(s)	961, 1138, 1261
Tru1I	TTAA	6 cut(s)	750, 1191, 1314, 1515, 1590, 2003
Tru9I	TTAA	6 cut(s)	750, 1191, 1314, 1515, 1590, 2003
TscAI	CASTG	5 cut(s)	478, 1245, 1404, 1804, 1816
TseFI	GTSAC	3 cut(s)	229, 694, 2078
Tsp45I	GTSAC	3 cut(s)	229, 694, 2078
TspDTI	ATGAA	4 cut(s)	1299, 1653, 1688, 1770
TspGWI	ACGGA	5 cut(s)	447, 557, 725, 1565, 2227
TspRI	CASTG	5 cut(s)	478, 1245, 1404, 1804, 1816
VpaK11BI	GGWCC	7 cut(s)	24, 454, 790, 967, 1820, 2101, 2135
VspI	ATTAAT	1 cut(s)	750
XapI	RAATTY	3 cut(s)	1030, 1693, 1712
XceI	RCATGY	1 cut(s)	2237
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1106, 2188
XhoI	CTCGAG	1 cut(s)	617
XmaJI	CCTAGG	1 cut(s)	1954
XmiI	GTMKAC	1 cut(s)	588
XspI	CTAG	4 cut(s)	1322, 1479, 1955, 2360
Zsp2I	ATGCAT	2 cut(s)	2122, 2245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.