Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0004162

Physical Location & Seq

Genomic Coordinates Forward (+)

24705732 .. 24710418

Gene Structure 4687 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00237120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1875 bp

ATGGTCTCCCTCAGACCCGGCGGAGTCTACACCAAGGCCCAGCTCCAGAAAGAGCTCGAAACCCTGGCCAATTGCGGAATGTTCGAGAAGGTCGATTTGGAAGGGAAGACCAACCCCGACGGCACCCTCGGCGTCACCATTTCCTTCACTGAGAGCACGTGGCAGTCGGCGGACAAGTTCCGGTGTATCAACGTGGGCCTGATGGCGCAGTCCAAGCCCATCGAAATGGACCCGGACATGACTGATAAGGAGAAGATGGAGTATTTCAGGAACCAGGAGAAGGATTACAAGAGGAGGATTGAGAGGGCCAGGCCGTGTTTGTTGCCGGCTCCGGTGCAGAGGGAGGTGTTGCTCATGTTGAGAGAGCAAGGGAAGGTGAGTGCTAGGTTGTTGCAGAAGATTCGGGACCGGGTTCAGAAATGGTACCAAGATGAGGGATACGCGTGTGCTCAAGTTGTCAATTTCGGGAATTTGAACACCAAAGAGGTTGTGTGTGAAGTGGTGGAAGGTGATATCACACAGCTGGTTATTCAGTTTCAGGATAAGCTTGGCAATTTTGTGGAAGGGAACACTCAGATTCCTGTGGTGAAGAGAGAATTGCCCAAACAGCTCCGACCAGGTTATGTCTTTAATATAGAAGCAGGGAAACAAGCTCTGAGGAACATAAACTCCCTGGCATTGTTTTCAAACATTGAAGTGAATCCACGACCGGATGAGAAGAATGAAGGAGGGATAATTGTTGAAATAAAGCTTAAAGAACTAGAACAAAAGACCGCTGAAGTCAGCACGGAATGGAGCATTGTTCCTGGACGTGGTGGTTATCCCACTTTGGCTTCACTGCAGCCTGGTGGGACAGTTACATTTGAACATCGAAATCTCAATGGGTTGAATAGGTCTATTCTCGGTTCAGTAACCACCAGCAACTTCTACAACCCTCAGGATGATCTTGCTTTTAAGCTTGAGTATGTGCATCCATATCTGGATGGTGTGTACAATCCCCGCAATCGCTCTCTCCGCGTAAGCTGCTTCAACAGTCGAAAATTGAGTCCAGTCTTTACTGGTGGGCCAGGGGCTGATGAAGTCCCCCCTATCTGGGTTGACCGAGCGGGCATGAAGGCTAATATAACAGAGAATTTCAACCGTCAGAGCAAATTCACTTATGGACTTGTAATGGAAGAGATAACAACACGTGATGAACGCAGCCATATCTGTTCAAATGGCCAAAGAGTGTTGCCCAGTGGTGGAGTCAGTGAAGATGGACCTCCAACAACTCTGAGTGGTACGGGCATTGATCGTGTGGCATTTTTACAGTCAAATATCACACGTGATAACACCAAGTTCGTGAATGGAACTATAGTTGGTGAGAGGAATGTGTTTCAGGTTGACCAAGGCCTTGGCATCGGCAGCAAGTTTCCATTCTTCAACCGCCACCAGCTAACGTTAACAAGATTTTTCCAGCTGAAGGAAGTGGAGGAAGGTGCCGGCAAACCACCACCACCTGTCCTTGTACTTCATGGTCACTATGGTGGCTGTGTTGGAGACCTTCCAAGTTATGATGCATTTACTCTTGGAGGTCCATATTCGGTGAGAGGTTACAACATGGGTGAAATAGGCGCTGCCAGGCAAATCCTTGAGCTTGCAGCTGAGCTACGGATACCAGTAAAGGGGACACATGTATATGCATTTGCAGAGCATGGCAATGATCTCGGAAGTTCAAAGGATGTCAAGGGTAACCCGACAGAGGTATACAGGCGAGTGGGTCATGGGTCATCATATGGTGTTGGTGTCAAGTTAGGTCTAGTAAGAGCAGAATATGCTGTGGATCACAACTCAGGCTCAGGTTCAGTATTCTTCCGATTTGGTGAGAGATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006605 GO:0006810 GO:0006886 GO:0006996 GO:0007275 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009653 GO:0009657 GO:0009658 GO:0009662 GO:0009707 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009941 GO:0009987 GO:0010006 GO:0010033 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019867 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031350 GO:0031351 GO:0031354 GO:0031355 GO:0031358 GO:0031359 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0048598 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0061927 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072596 GO:0072598 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bac_surface_Ag

Protein Analysis

624

Amino Acids

69.34

Weight (kDa)

7.98

Isoelectric Point (pI)

38.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
POTRA1_3_Toc75	PF25282	1 - 51	1.7e-18	Toc75-like, POTRA domain
POTRA2_Toc75	PF25280	60 - 171	2.4e-59	Toc75-like, second POTRA domain
POTRA1_3_Toc75	PF25282	172 - 253	4.8e-31	Toc75-like, POTRA domain
Omp85	PF01103	292 - 621	2.9e-20	Omp85 superfamily domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004162)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46740 AT4G09080 AT4G09080 AT4G09080
fragaria_vesca	FvH4_3g28760 FvH4_3g28760 FvH4_3g28760 FvH4_5g29410
malus_domestica	MD03G1086500.v1.1 MD11G1095600.v1.1
prunus_persica	Prupe.6G071100_v2.0.a1
pyrus_communis	pycom03g06860 pycom11g08100 pycom11g08110
rosa_chinensis	RchiOBHm_Chr5g0052291 RchiOBHm_Chr7g0222311
rosa_laevigata	RLG00000002071 RLG00000034828
rosa_multiflora	Rmu_sc0007069.1_g000009 Rmu_sc0028377.1_g000001 Rmu_sc0032875.1_g000001 Rmu_sc0032876.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028120 Rroxscaffold_3G00237120
rosa_rugosa	Rorug05G0273100 Rorug07G0207600
rosa_samantha	Rh5CG382000 Rh5DG371900 Rh7AG349900 Rh7DG346100
rosa_wichuraiana	Rw5G032630 Rw5G032670 Rw7G029530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	423
AccB1I	GGYRCC	3 cut(s)	122, 423, 1478
AccBSI	CCGCTC	1 cut(s)	1106
AccI	GTMKAC	2 cut(s)	27, 1746
AccII	CGCG	2 cut(s)	443, 1017
AciI	CCGC	8 cut(s)	21, 75, 170, 774, 1000, 1015, 1106, 1426
AclI	AACGTT	1 cut(s)	1439
AclWI	GGATC	1 cut(s)	1830
AcoI	YGGCCR	2 cut(s)	66, 1219
AcsI	RAATTY	3 cut(s)	469, 1132, 1151
AcuI	CTGAAG	2 cut(s)	798, 1481
AcvI	CACGTG	3 cut(s)	159, 1190, 1325
AcyI	GRCGYC	1 cut(s)	132
AfaI	GTAC	4 cut(s)	425, 992, 1282, 1509
AfiI	CCNNNNNNNGG	9 cut(s)	280, 433, 812, 1092, 1093, 1241, 1462, 1664, 1741
AflIII	ACRYGT	4 cut(s)	441, 1187, 1322, 1672
AjiI	CACGTC	1 cut(s)	812
AjnI	CCWGG	9 cut(s)	63, 273, 308, 616, 672, 805, 844, 1066, 1619
AjuI	GAANNNNNNNTTGG	2 cut(s)	80, 112
AleI	CACNNNNGTG	1 cut(s)	1524
AloI	GAACNNNNNNTCC	2 cut(s)	653, 685
Alw21I	GWGCWC	3 cut(s)	57, 158, 451
Alw26I	GTCTC	2 cut(s)	10, 1533
AlwI	GGATC	1 cut(s)	1830
AlwNI	CAGNNNCTG	1 cut(s)	1073
AoxI	GGCC	8 cut(s)	36, 66, 196, 306, 311, 1064, 1219, 1390
ApeKI	GCWGC	6 cut(s)	841, 1023, 1200, 1404, 1616, 1640
ApoI	RAATTY	3 cut(s)	469, 1132, 1151
ArsI	GACNNNNNNTTYG	2 cut(s)	1030, 1062
Asp718I	GGTACC	1 cut(s)	423
AspLEI	GCGC	2 cut(s)	208, 1616
AspS9I	GGNCC	8 cut(s)	37, 196, 229, 306, 406, 1064, 1259, 1574
AsuC2I	CCSGG	3 cut(s)	18, 233, 410
AsuHPI	GGTGA	8 cut(s)	127, 388, 521, 598, 1373, 1597, 1616, 1874
AvaII	GGWCC	4 cut(s)	229, 406, 1259, 1574
AxyI	CCTNAGG	1 cut(s)	936
BaeI	ACNNNNGTAYC	2 cut(s)	430, 463
BalI	TGGCCA	2 cut(s)	68, 1221
BanI	GGYRCC	3 cut(s)	122, 423, 1478
BanII	GRGCYC	1 cut(s)	57
BbrPI	CACGTG	3 cut(s)	159, 1190, 1325
BbsI	GAAGAC	1 cut(s)	113
Bbv12I	GWGCWC	3 cut(s)	57, 158, 451
BbvI	GCAGC	6 cut(s)	853, 1010, 1212, 1416, 1603, 1652
BccI	CCATC	5 cut(s)	196, 227, 250, 977, 1250
BceAI	ACGGC	2 cut(s)	136, 298
BcgI	CGANNNNNNTGC	4 cut(s)	383, 417, 1687, 1721
BciT130I	CCWGG	9 cut(s)	65, 275, 310, 618, 674, 807, 846, 1068, 1621
BciVI	GTATCC	2 cut(s)	431, 1647
BcnI	CCSGG	3 cut(s)	18, 233, 410
BcoDI	GTCTC	2 cut(s)	10, 1533
BfaI	CTAG	3 cut(s)	384, 761, 1799
BfmI	CTRYAG	2 cut(s)	839, 1353
BfoI	RGCGCY	1 cut(s)	1617
BfuI	GTATCC	2 cut(s)	431, 1647
BisI	GCNGC	6 cut(s)	842, 1024, 1201, 1405, 1617, 1641
BlpI	GCTNAGC	1 cut(s)	1644
BlsI	GCNGC	6 cut(s)	843, 1025, 1202, 1406, 1618, 1642
Bme18I	GGWCC	4 cut(s)	229, 406, 1259, 1574
BmgBI	CACGTC	1 cut(s)	812
BmgT120I	GGNCC	8 cut(s)	37, 196, 229, 306, 406, 1064, 1259, 1574
BmiI	GGNNCC	7 cut(s)	124, 231, 272, 330, 407, 425, 1480
BmrI	ACTGGG	1 cut(s)	1230
BmsI	GCATC	3 cut(s)	979, 1407, 1546
BmuI	ACTGGG	1 cut(s)	1230
BpiI	GAAGAC	1 cut(s)	113
BpmI	CTGGAG	1 cut(s)	29
Bpu10I	CCTNAGC	1 cut(s)	1837
Bpu1102I	GCTNAGC	1 cut(s)	1644
BpuEI	CTTGAG	3 cut(s)	435, 980, 1652
BpuMI	CCSGG	3 cut(s)	18, 233, 410
BsaAI	YACGTR	3 cut(s)	159, 1190, 1325
BsaHI	GRCGYC	1 cut(s)	132
BsaI	GGTCTC	2 cut(s)	10, 1533
BsaJI	CCNNGG	7 cut(s)	33, 63, 127, 672, 1067, 1387, 1393
BsaWI	WCCGGW	3 cut(s)	180, 331, 709
BsaXI	ACNNNNNCTCC	2 cut(s)	653, 683
Bsc4I	CCNNNNNNNGG	9 cut(s)	280, 433, 812, 1092, 1093, 1241, 1462, 1664, 1741
Bse118I	RCCGGY	2 cut(s)	325, 1481
Bse1I	ACTGG	4 cut(s)	1049, 1063, 1236, 1658
Bse21I	CCTNAGG	1 cut(s)	936
Bse3DI	GCAATG	1 cut(s)	1705
BseBI	CCWGG	9 cut(s)	65, 275, 310, 618, 674, 807, 846, 1068, 1621
BseDI	CCNNGG	7 cut(s)	33, 63, 127, 672, 1067, 1387, 1393
BseGI	GGATG	5 cut(s)	718, 946, 970, 988, 1726
BseLI	CCNNNNNNNGG	9 cut(s)	280, 433, 812, 1092, 1093, 1241, 1462, 1664, 1741
BseMI	GCAATG	1 cut(s)	1705
BseMII	CTCAG	9 cut(s)	25, 141, 587, 647, 950, 1265, 1635, 1845, 1851
BseNI	ACTGG	4 cut(s)	1049, 1063, 1236, 1658
BseRI	GAGGAG	1 cut(s)	307
BseXI	GCAGC	6 cut(s)	853, 1010, 1212, 1416, 1603, 1652
BseYI	CCCAGC	1 cut(s)	39
BsgI	GTGCAG	1 cut(s)	356
Bsh1236I	CGCG	2 cut(s)	443, 1017
Bsh1285I	CGRYCG	1 cut(s)	710
BshFI	GGCC	8 cut(s)	38, 68, 198, 308, 313, 1066, 1221, 1392
BshNI	GGYRCC	3 cut(s)	122, 423, 1478
BsiEI	CGRYCG	1 cut(s)	710
BsiHKAI	GWGCWC	3 cut(s)	57, 158, 451
BsiSI	CCGG	8 cut(s)	18, 181, 233, 326, 332, 409, 710, 1482
BslFI	GGGAC	4 cut(s)	419, 865, 1067, 1681
BslI	CCNNNNNNNGG	9 cut(s)	280, 433, 812, 1092, 1093, 1241, 1462, 1664, 1741
BsmAI	GTCTC	2 cut(s)	10, 1533
BsmFI	GGGAC	4 cut(s)	419, 865, 1067, 1681
BsnI	GGCC	8 cut(s)	38, 68, 198, 308, 313, 1066, 1221, 1392
Bso31I	GGTCTC	2 cut(s)	10, 1533
Bsp1286I	GDGCHC	3 cut(s)	57, 158, 451
Bsp1407I	TGTACA	1 cut(s)	990
Bsp143I	GATC	4 cut(s)	943, 1291, 1702, 1822
Bsp1720I	GCTNAGC	1 cut(s)	1644
BspACI	CCGC	8 cut(s)	21, 75, 170, 774, 1000, 1015, 1106, 1426
BspANI	GGCC	8 cut(s)	38, 68, 198, 308, 313, 1066, 1221, 1392
BspCNI	CTCAG	9 cut(s)	24, 142, 586, 648, 949, 1266, 1636, 1844, 1850
BspFNI	CGCG	2 cut(s)	443, 1017
BspLI	GGNNCC	7 cut(s)	124, 231, 272, 330, 407, 425, 1480
BspMAI	CTGCAG	1 cut(s)	843
BspPI	GGATC	1 cut(s)	1830
BspT107I	GGYRCC	3 cut(s)	122, 423, 1478
BspTNI	GGTCTC	2 cut(s)	10, 1533
BsrBI	CCGCTC	1 cut(s)	1106
BsrDI	GCAATG	1 cut(s)	1705
BsrFI	RCCGGY	2 cut(s)	325, 1481
BsrGI	TGTACA	1 cut(s)	990
BsrI	ACTGG	4 cut(s)	1049, 1063, 1236, 1658
BssAI	RCCGGY	2 cut(s)	325, 1481
BssECI	CCNNGG	7 cut(s)	33, 63, 127, 672, 1067, 1387, 1393
BssMI	GATC	4 cut(s)	943, 1291, 1702, 1822
BssNAI	GTATAC	1 cut(s)	1747
BssNI	GRCGYC	1 cut(s)	132
BssT1I	CCWWGG	3 cut(s)	33, 1387, 1393
Bst1107I	GTATAC	1 cut(s)	1747
Bst2UI	CCWGG	9 cut(s)	65, 275, 310, 618, 674, 807, 846, 1068, 1621
Bst4CI	ACNGT	4 cut(s)	856, 1034, 1142, 1311
Bst6I	CTCTTC	2 cut(s)	584, 1170
BstACI	GRCGYC	1 cut(s)	132
BstAPI	GCANNNNNTGC	1 cut(s)	1814
BstAUI	TGTACA	1 cut(s)	990
BstBAI	YACGTR	3 cut(s)	159, 1190, 1325
BstC8I	GCNNGC	4 cut(s)	327, 1108, 1483, 1638
BstDEI	CTNAG	9 cut(s)	11, 150, 573, 656, 936, 1274, 1644, 1831, 1837
BstEII	GGTNACC	1 cut(s)	1730
BstF5I	GGATG	5 cut(s)	718, 946, 970, 988, 1726
BstFNI	CGCG	2 cut(s)	443, 1017
BstH2I	RGCGCY	1 cut(s)	1617
BstHHI	GCGC	2 cut(s)	208, 1616
BstKTI	GATC	4 cut(s)	946, 1294, 1705, 1825
BstMAI	GTCTC	2 cut(s)	10, 1533
BstMBI	GATC	4 cut(s)	943, 1291, 1702, 1822
BstMCI	CGRYCG	1 cut(s)	710
BstMWI	GCNNNNNNNGC	7 cut(s)	129, 214, 607, 1014, 1023, 1404, 1814
BstNI	CCWGG	9 cut(s)	65, 275, 310, 618, 674, 807, 846, 1068, 1621
BstNSI	RCATGY	1 cut(s)	1676
BstPI	GGTNACC	1 cut(s)	1730
BstSFI	CTRYAG	2 cut(s)	839, 1353
BstUI	CGCG	2 cut(s)	443, 1017
BstV1I	GCAGC	6 cut(s)	853, 1010, 1212, 1416, 1603, 1652
BstV2I	GAAGAC	1 cut(s)	113
BstXI	CCANNNNNNTGG	2 cut(s)	226, 1394
BstZ17I	GTATAC	1 cut(s)	1747
Bsu36I	CCTNAGG	1 cut(s)	936
BsuI	GTATCC	2 cut(s)	431, 1647
BsuRI	GGCC	8 cut(s)	38, 68, 198, 308, 313, 1066, 1221, 1392
BtrI	CACGTC	1 cut(s)	812
BtsCI	GGATG	5 cut(s)	718, 946, 970, 988, 1726
BtsI	GCAGTG	1 cut(s)	836
BtsIMutI	CAGTG	4 cut(s)	147, 836, 1243, 1255
Cac8I	GCNNGC	4 cut(s)	327, 1108, 1483, 1638
CaiI	CAGNNNCTG	1 cut(s)	1073
CfoI	GCGC	2 cut(s)	208, 1616
Cfr10I	RCCGGY	2 cut(s)	325, 1481
Cfr13I	GGNCC	8 cut(s)	37, 196, 229, 306, 406, 1064, 1259, 1574
CseI	GACGC	1 cut(s)	121
CsiI	ACCWGGT	1 cut(s)	616
Csp6I	GTAC	4 cut(s)	424, 991, 1281, 1508
CviAII	CATG	8 cut(s)	238, 355, 1111, 1514, 1600, 1673, 1694, 1763
CviQI	GTAC	4 cut(s)	424, 991, 1281, 1508
DdeI	CTNAG	9 cut(s)	11, 150, 573, 656, 936, 1274, 1644, 1831, 1837
DpnI	GATC	4 cut(s)	945, 1293, 1704, 1824
DpnII	GATC	4 cut(s)	943, 1291, 1702, 1822
EaeI	YGGCCR	2 cut(s)	66, 1219
Eam1104I	CTCTTC	2 cut(s)	584, 1170
EarI	CTCTTC	2 cut(s)	584, 1170
EciI	GGCGGA	2 cut(s)	36, 185
Ecl136II	GAGCTC	1 cut(s)	55
Eco130I	CCWWGG	3 cut(s)	33, 1387, 1393
Eco147I	AGGCCT	1 cut(s)	1392
Eco24I	GRGCYC	1 cut(s)	57
Eco31I	GGTCTC	2 cut(s)	10, 1533
Eco32I	GATATC	1 cut(s)	514
Eco47I	GGWCC	4 cut(s)	229, 406, 1259, 1574
Eco53kI	GAGCTC	1 cut(s)	55
Eco57I	CTGAAG	2 cut(s)	798, 1481
Eco72I	CACGTG	3 cut(s)	159, 1190, 1325
Eco81I	CCTNAGG	1 cut(s)	936
Eco91I	GGTNACC	1 cut(s)	1730
EcoICRI	GAGCTC	1 cut(s)	55
EcoO65I	GGTNACC	1 cut(s)	1730
EcoRII	CCWGG	9 cut(s)	63, 273, 308, 616, 672, 805, 844, 1066, 1619
EcoRV	GATATC	1 cut(s)	514
EcoT14I	CCWWGG	3 cut(s)	33, 1387, 1393
EcoT22I	ATGCAT	2 cut(s)	1561, 1684
EcoT38I	GRGCYC	1 cut(s)	57
ErhI	CCWWGG	3 cut(s)	33, 1387, 1393
FaeI	CATG	8 cut(s)	241, 358, 1114, 1517, 1603, 1676, 1697, 1766
FaqI	GGGAC	4 cut(s)	419, 865, 1067, 1681
FatI	CATG	8 cut(s)	237, 354, 1110, 1513, 1599, 1672, 1693, 1762
FauI	CCCGC	2 cut(s)	1007, 1099
FauNDI	CATATG	1 cut(s)	1774
FblI	GTMKAC	2 cut(s)	27, 1746
Fnu4HI	GCNGC	6 cut(s)	842, 1024, 1201, 1405, 1617, 1641
FokI	GGATG	5 cut(s)	725, 953, 957, 995, 1733
FriOI	GRGCYC	1 cut(s)	57
Fsp4HI	GCNGC	6 cut(s)	842, 1024, 1201, 1405, 1617, 1641
FspBI	CTAG	3 cut(s)	384, 761, 1799
GlaI	GCGC	2 cut(s)	207, 1615
GluI	GCNGC	6 cut(s)	842, 1024, 1201, 1405, 1617, 1641
GsaI	CCCAGC	1 cut(s)	43
GsuI	CTGGAG	1 cut(s)	29
HaeII	RGCGCY	1 cut(s)	1617
HaeIII	GGCC	8 cut(s)	38, 68, 198, 308, 313, 1066, 1221, 1392
HapII	CCGG	8 cut(s)	18, 181, 233, 326, 332, 409, 710, 1482
HgaI	GACGC	1 cut(s)	121
HhaI	GCGC	2 cut(s)	208, 1616
Hin1I	GRCGYC	1 cut(s)	132
Hin1II	CATG	8 cut(s)	241, 358, 1114, 1517, 1603, 1676, 1697, 1766
Hin6I	GCGC	2 cut(s)	206, 1614
HinP1I	GCGC	2 cut(s)	206, 1614
HincII	GTYRAC	3 cut(s)	1099, 1384, 1443
HindII	GTYRAC	3 cut(s)	1099, 1384, 1443
HindIII	AAGCTT	3 cut(s)	545, 749, 956
HinfI	GANTC	6 cut(s)	24, 400, 577, 700, 1045, 1245
HpaI	GTTAAC	1 cut(s)	1443
HpaII	CCGG	8 cut(s)	18, 181, 233, 326, 332, 409, 710, 1482
HphI	GGTGA	8 cut(s)	127, 388, 521, 598, 1373, 1597, 1616, 1874
Hpy166II	GTNNAC	6 cut(s)	28, 991, 1099, 1384, 1443, 1747
Hpy188I	TCNGA	9 cut(s)	14, 417, 576, 614, 657, 1146, 1275, 1709, 1856
Hpy188III	TCNNGA	9 cut(s)	46, 85, 268, 404, 466, 539, 938, 980, 1342
Hpy8I	GTNNAC	6 cut(s)	28, 991, 1099, 1384, 1443, 1747
Hpy99I	CGWCG	1 cut(s)	122
HpyCH4III	ACNGT	4 cut(s)	856, 1034, 1142, 1311
HpyCH4IV	ACGT	6 cut(s)	158, 192, 811, 1189, 1324, 1439
HpyCH4V	TGCA	8 cut(s)	337, 394, 841, 970, 1559, 1640, 1682, 1688
HpyF10VI	GCNNNNNNNGC	7 cut(s)	129, 214, 607, 1014, 1023, 1404, 1814
HpyF3I	CTNAG	9 cut(s)	11, 150, 573, 656, 936, 1274, 1644, 1831, 1837
HpySE526I	ACGT	6 cut(s)	158, 192, 811, 1189, 1324, 1439
Hsp92I	GRCGYC	1 cut(s)	132
Hsp92II	CATG	8 cut(s)	241, 358, 1114, 1517, 1603, 1676, 1697, 1766
HspAI	GCGC	2 cut(s)	206, 1614
KpnI	GGTACC	1 cut(s)	427
KroI	GCCGGC	2 cut(s)	325, 1481
KroNI	GCCGGC	2 cut(s)	327, 1483
KspAI	GTTAAC	1 cut(s)	1443
Kzo9I	GATC	4 cut(s)	943, 1291, 1702, 1822
LmnI	GCTCC	4 cut(s)	48, 334, 615, 795
Lsp1109I	GCAGC	6 cut(s)	853, 1010, 1212, 1416, 1603, 1652
LweI	GCATC	3 cut(s)	979, 1407, 1546
MabI	ACCWGGT	1 cut(s)	616
MaeI	CTAG	3 cut(s)	384, 761, 1799
MaeII	ACGT	6 cut(s)	158, 192, 811, 1189, 1324, 1439
MaeIII	GTNAC	6 cut(s)	133, 856, 910, 1517, 1592, 1730
MalI	GATC	4 cut(s)	945, 1293, 1704, 1824
MbiI	CCGCTC	1 cut(s)	1106
MboI	GATC	4 cut(s)	943, 1291, 1702, 1822
MboII	GAAGA	9 cut(s)	118, 265, 409, 601, 730, 1187, 1265, 1411, 1843
MfeI	CAATTG	1 cut(s)	70
MhlI	GDGCHC	3 cut(s)	57, 158, 451
MlsI	TGGCCA	2 cut(s)	68, 1221
MluCI	AATT	9 cut(s)	70, 460, 469, 553, 596, 735, 1040, 1132, 1151
MluI	ACGCGT	1 cut(s)	441
MluNI	TGGCCA	2 cut(s)	68, 1221
MlyI	GAGTC	3 cut(s)	33, 1054, 1254
MmeI	TCCRAC	3 cut(s)	637, 1289, 1516
Mox20I	TGGCCA	2 cut(s)	68, 1221
Mph1103I	ATGCAT	2 cut(s)	1561, 1684
MroNI	GCCGGC	2 cut(s)	325, 1481
MscI	TGGCCA	2 cut(s)	68, 1221
MseI	TTAA	4 cut(s)	630, 753, 954, 1442
MslI	CAYNNNNRTG	5 cut(s)	224, 695, 1524, 1677, 1698
Msp20I	TGGCCA	2 cut(s)	68, 1221
MspA1I	CMGCKG	4 cut(s)	523, 776, 1459, 1643
MspI	CCGG	8 cut(s)	18, 181, 233, 326, 332, 409, 710, 1482
MunI	CAATTG	1 cut(s)	70
MvaI	CCWGG	9 cut(s)	65, 275, 310, 618, 674, 807, 846, 1068, 1621
MvnI	CGCG	2 cut(s)	443, 1017
MwoI	GCNNNNNNNGC	7 cut(s)	129, 214, 607, 1014, 1023, 1404, 1814
NaeI	GCCGGC	2 cut(s)	327, 1483
NciI	CCSGG	3 cut(s)	18, 233, 410
NdeI	CATATG	1 cut(s)	1774
NdeII	GATC	4 cut(s)	943, 1291, 1702, 1822
NgoMIV	GCCGGC	2 cut(s)	325, 1481
NlaIII	CATG	8 cut(s)	241, 358, 1114, 1517, 1603, 1676, 1697, 1766
NlaIV	GGNNCC	7 cut(s)	124, 231, 272, 330, 407, 425, 1480
NmeAIII	GCCGAG	1 cut(s)	108
NmuCI	GTSAC	2 cut(s)	133, 1517
NsiI	ATGCAT	2 cut(s)	1561, 1684
NspI	RCATGY	1 cut(s)	1676
OliI	CACNNNNGTG	1 cut(s)	1524
PceI	AGGCCT	1 cut(s)	1392
PciI	ACATGT	1 cut(s)	1672
PcsI	WCGNNNNNNNCGW	1 cut(s)	90
PdiI	GCCGGC	2 cut(s)	327, 1483
PfeI	GAWTC	3 cut(s)	400, 577, 700
PfoI	TCCNGGA	1 cut(s)	805
PkrI	GCNGC	6 cut(s)	843, 1025, 1202, 1406, 1618, 1642
PleI	GAGTC	3 cut(s)	32, 1053, 1253
PmaCI	CACGTG	3 cut(s)	159, 1190, 1325
PmlI	CACGTG	3 cut(s)	159, 1190, 1325
PpsI	GAGTC	3 cut(s)	32, 1053, 1253
Ppu21I	YACGTR	3 cut(s)	159, 1190, 1325
PscI	ACATGT	1 cut(s)	1672
Psp124BI	GAGCTC	1 cut(s)	57
Psp1406I	AACGTT	1 cut(s)	1439
Psp6I	CCWGG	9 cut(s)	63, 273, 308, 616, 672, 805, 844, 1066, 1619
PspCI	CACGTG	3 cut(s)	159, 1190, 1325
PspEI	GGTNACC	1 cut(s)	1730
PspFI	CCCAGC	1 cut(s)	39
PspGI	CCWGG	9 cut(s)	63, 273, 308, 616, 672, 805, 844, 1066, 1619
PspN4I	GGNNCC	7 cut(s)	124, 231, 272, 330, 407, 425, 1480
PspPI	GGNCC	8 cut(s)	37, 196, 229, 306, 406, 1064, 1259, 1574
PstI	CTGCAG	1 cut(s)	843
PstNI	CAGNNNCTG	1 cut(s)	1073
PvuII	CAGCTG	3 cut(s)	523, 1459, 1643
RsaI	GTAC	4 cut(s)	425, 992, 1282, 1509
RsaNI	GTAC	4 cut(s)	424, 991, 1281, 1508
RseI	CAYNNNNRTG	5 cut(s)	224, 695, 1524, 1677, 1698
SacI	GAGCTC	1 cut(s)	57
SaqAI	TTAA	4 cut(s)	630, 753, 954, 1442
SatI	GCNGC	6 cut(s)	842, 1024, 1201, 1405, 1617, 1641
Sau3AI	GATC	4 cut(s)	943, 1291, 1702, 1822
Sau96I	GGNCC	8 cut(s)	37, 196, 229, 306, 406, 1064, 1259, 1574
SchI	GAGTC	3 cut(s)	33, 1054, 1254
SduI	GDGCHC	3 cut(s)	57, 158, 451
SexAI	ACCWGGT	1 cut(s)	616
SfaNI	GCATC	3 cut(s)	979, 1407, 1546
SfcI	CTRYAG	2 cut(s)	839, 1353
SinI	GGWCC	4 cut(s)	229, 406, 1259, 1574
SmiMI	CAYNNNNRTG	5 cut(s)	224, 695, 1524, 1677, 1698
SmlI	CTYRAG	3 cut(s)	450, 959, 1631
SmoI	CTYRAG	3 cut(s)	450, 959, 1631
Sse9I	AATT	9 cut(s)	70, 460, 469, 553, 596, 735, 1040, 1132, 1151
SseBI	AGGCCT	1 cut(s)	1392
SsiI	CCGC	8 cut(s)	21, 75, 170, 774, 1000, 1015, 1106, 1426
SspMI	CTAG	3 cut(s)	384, 761, 1799
SstI	GAGCTC	1 cut(s)	57
StuI	AGGCCT	1 cut(s)	1392
StyI	CCWWGG	3 cut(s)	33, 1387, 1393
TaaI	ACNGT	4 cut(s)	856, 1034, 1142, 1311
TaiI	ACGT	6 cut(s)	161, 195, 814, 1192, 1327, 1442
TaqI	TCGA	6 cut(s)	57, 84, 93, 222, 871, 1036
TaqII	GACCGA	1 cut(s)	1116
TasI	AATT	9 cut(s)	70, 460, 469, 553, 596, 735, 1040, 1132, 1151
TatI	WGTACW	2 cut(s)	990, 1507
TfiI	GAWTC	3 cut(s)	400, 577, 700
Tru1I	TTAA	4 cut(s)	630, 753, 954, 1442
Tru9I	TTAA	4 cut(s)	630, 753, 954, 1442
TscAI	CASTG	4 cut(s)	154, 843, 1243, 1255
TseFI	GTSAC	2 cut(s)	133, 1517
TseI	GCWGC	6 cut(s)	841, 1023, 1200, 1404, 1616, 1640
Tsp45I	GTSAC	2 cut(s)	133, 1517
TspDTI	ATGAA	5 cut(s)	738, 1092, 1127, 1209, 1502
TspGWI	ACGGA	2 cut(s)	803, 1666
TspRI	CASTG	4 cut(s)	154, 843, 1243, 1255
VpaK11BI	GGWCC	4 cut(s)	229, 406, 1259, 1574
XapI	RAATTY	3 cut(s)	469, 1132, 1151
XceI	RCATGY	1 cut(s)	1676
XmiI	GTMKAC	2 cut(s)	27, 1746
XspI	CTAG	3 cut(s)	384, 761, 1799
Zsp2I	ATGCAT	2 cut(s)	1561, 1684

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.