Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0004162

Physical Location & Seq

Genomic Coordinates Forward (+)

6210566 .. 6211487

Gene Structure 922 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g08100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGAGGAAAAAAAATGTGCAAAGCTTCCAAATTTTTTTGCTTACTTTGATCACTAACTCGGGAACTAGTGACTGCGTCAACTCGACCCCCACCACGCAGAAGTCCAAAAGTCCAAACCCAATAAACCCCTTTTTCCTTACGAGAGAGAGTGGCCTTATCTCTTCTCGTCTTTCTTCCGCTGCTGCATCCCGCAACACAATGTTCGCAGCGGCGCCCTCCTCCGCCTACCTCAACCCCAAGCCCACCATCCTCCCCTCCTCCCCTCGCACGCTATCCCCGCCCCTCACAGCCGCCACCGCCACTGCCTCTAACAGCCGCCGACCAGTCGTCAAATGCCACCTGTCTTCGAATTCCCCCTCTCCCCTTTCCCAAAACCCTAAACCCTCCTCCACTCCCCTCAAAACCCTCTCCAAAGCCCTCGCCGCCGGCTCCACCGTCACCCTCATCTTCAATTTGCAATCTTTTGCTGGGAATGGTAATTCCGGCGGTGGCGGAGGTGGGTTTGGCGGCGGAGGTGGAGGGGGAGATGGGTTCCGCGGCGGGGAAGATGGGTTTGGTGGGTTTTTGAAGAGGCTGTTGTTTGGGTCGCAGACGGCCATGGCGGACGAGCCACAGTCTCAAGAGTGGGATTCGCATGGGTTACCGGCCAACATTGTTGTCCAGCTCAACAAGCTCAGTGGGTTCAAGAAATACAAGGTCTCCGAGATCTATCATGTTCTTCGATCGGCGGCGGTGGAGCACCGTCGGCACCGAAGACTCATTCTTCGAAATGGTATCCCTGAGACCCGGCGGCGTTTATACCAAAGCCCAGTTGCAGAAGGAGCTCGAGACCTTAGCCAATTGCGGGATGTTCGAGAAGGTCGATTTGGAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006605 GO:0006810 GO:0006886 GO:0006996 GO:0007275 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009653 GO:0009657 GO:0009658 GO:0009662 GO:0009707 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009941 GO:0009987 GO:0010006 GO:0010033 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019867 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031350 GO:0031351 GO:0031354 GO:0031355 GO:0031358 GO:0031359 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0048598 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0061927 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072596 GO:0072598 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bac_surface_Ag

Protein Analysis

292

Amino Acids

31.0

Weight (kDa)

10.94

Isoelectric Point (pI)

66.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004162)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46740 AT4G09080 AT4G09080 AT4G09080
fragaria_vesca	FvH4_3g28760 FvH4_3g28760 FvH4_3g28760 FvH4_5g29410
malus_domestica	MD03G1086500.v1.1 MD11G1095600.v1.1
prunus_persica	Prupe.6G071100_v2.0.a1
pyrus_communis	pycom03g06860 pycom11g08100 pycom11g08110
rosa_chinensis	RchiOBHm_Chr5g0052291 RchiOBHm_Chr7g0222311
rosa_laevigata	RLG00000002071 RLG00000034828
rosa_multiflora	Rmu_sc0007069.1_g000009 Rmu_sc0028377.1_g000001 Rmu_sc0032875.1_g000001 Rmu_sc0032876.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028120 Rroxscaffold_3G00237120
rosa_rugosa	Rorug05G0273100 Rorug07G0207600
rosa_samantha	Rh5CG382000 Rh5DG371900 Rh7AG349900 Rh7DG346100
rosa_wichuraiana	Rw5G032630 Rw5G032670 Rw7G029530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	211, 747
AccII	CGCG	1 cut(s)	537
AcoI	YGGCCR	2 cut(s)	594, 645
AcsI	RAATTY	2 cut(s)	30, 349
AcyI	GRCGYC	1 cut(s)	212
AfiI	CCNNNNNNNGG	2 cut(s)	541, 844
AgsI	TTSAA	3 cut(s)	451, 568, 685
AhdI	GACNNNNNGTC	1 cut(s)	326
AhlI	ACTAGT	1 cut(s)	65
AjuI	GAANNNNNNNTTGG	3 cut(s)	537, 569, 849
AluBI	AGCT	4 cut(s)	24, 664, 673, 824
AluI	AGCT	4 cut(s)	24, 664, 673, 824
Alw21I	GWGCWC	2 cut(s)	741, 826
Alw26I	GTCTC	4 cut(s)	621, 703, 776, 822
Ama87I	CYCGRG	2 cut(s)	58, 825
AoxI	GGCC	3 cut(s)	151, 594, 645
ApeKI	GCWGC	3 cut(s)	179, 182, 206
ApoI	RAATTY	2 cut(s)	30, 349
ArsI	GACNNNNNNTTYG	2 cut(s)	747, 779
AspLEI	GCGC	1 cut(s)	214
AsuC2I	CCSGG	1 cut(s)	787
AsuHPI	GGTGA	1 cut(s)	430
AsuII	TTCGAA	2 cut(s)	347, 766
AvaI	CYCGRG	2 cut(s)	58, 825
BanI	GGYRCC	2 cut(s)	211, 747
BanII	GRGCYC	1 cut(s)	826
BbsI	GAAGAC	2 cut(s)	336, 760
Bbv12I	GWGCWC	2 cut(s)	741, 826
BbvI	GCAGC	3 cut(s)	166, 169, 218
BccI	CCATC	3 cut(s)	254, 521, 542
BceAI	ACGGC	1 cut(s)	609
BciVI	GTATCC	1 cut(s)	785
BclI	TGATCA	1 cut(s)	48
BcnI	CCSGG	1 cut(s)	787
BcoDI	GTCTC	4 cut(s)	621, 703, 776, 822
BcuI	ACTAGT	1 cut(s)	65
BfaI	CTAG	1 cut(s)	66
BfoI	RGCGCY	1 cut(s)	215
BfuI	GTATCC	1 cut(s)	785
BglII	AGATCT	1 cut(s)	705
Bme1390I	CCNGG	1 cut(s)	787
BmeRI	GACNNNNNGTC	1 cut(s)	326
BmeT110I	CYCGRG	2 cut(s)	58, 825
BmiI	GGNNCC	4 cut(s)	213, 430, 533, 749
BmrFI	CCNGG	1 cut(s)	787
BmrI	ACTGGG	1 cut(s)	803
BmsI	GCATC	1 cut(s)	194
BmuI	ACTGGG	1 cut(s)	803
BpiI	GAAGAC	2 cut(s)	336, 760
Bpu10I	CCTNAGC	1 cut(s)	833
Bpu14I	TTCGAA	2 cut(s)	347, 766
BpuEI	CTTGAG	1 cut(s)	603
BpuMI	CCSGG	1 cut(s)	787
BsaHI	GRCGYC	1 cut(s)	212
BsaI	GGTCTC	3 cut(s)	703, 776, 822
BsaJI	CCNNGG	2 cut(s)	535, 597
BsaXI	ACNNNNNCTCC	2 cut(s)	683, 713
Bsc4I	CCNNNNNNNGG	2 cut(s)	541, 844
Bse118I	RCCGGY	2 cut(s)	425, 643
Bse1I	ACTGG	2 cut(s)	323, 809
BseDI	CCNNGG	2 cut(s)	535, 597
BseGI	GGATG	3 cut(s)	185, 246, 853
BseLI	CCNNNNNNNGG	2 cut(s)	541, 844
BseMII	CTCAG	2 cut(s)	688, 771
BseNI	ACTGG	2 cut(s)	323, 809
BseRI	GAGGAG	3 cut(s)	208, 247, 376
BseXI	GCAGC	3 cut(s)	166, 169, 218
BseYI	CCCAGC	1 cut(s)	467
Bsh1236I	CGCG	1 cut(s)	537
Bsh1285I	CGRYCG	1 cut(s)	725
BshFI	GGCC	3 cut(s)	153, 596, 647
BshNI	GGYRCC	2 cut(s)	211, 747
BsiEI	CGRYCG	1 cut(s)	725
BsiHKAI	GWGCWC	2 cut(s)	741, 826
BsiHKCI	CYCGRG	2 cut(s)	58, 825
BsiSI	CCGG	4 cut(s)	426, 483, 644, 787
BslI	CCNNNNNNNGG	2 cut(s)	541, 844
BsmAI	GTCTC	4 cut(s)	621, 703, 776, 822
BsnI	GGCC	3 cut(s)	153, 596, 647
Bso31I	GGTCTC	3 cut(s)	703, 776, 822
BsoBI	CYCGRG	2 cut(s)	58, 825
Bsp119I	TTCGAA	2 cut(s)	347, 766
Bsp1286I	GDGCHC	2 cut(s)	741, 826
Bsp143I	GATC	3 cut(s)	48, 705, 722
Bsp19I	CCATGG	1 cut(s)	597
BspANI	GGCC	3 cut(s)	153, 596, 647
BspCNI	CTCAG	2 cut(s)	687, 772
BspFNI	CGCG	1 cut(s)	537
BspLI	GGNNCC	4 cut(s)	213, 430, 533, 749
BspT104I	TTCGAA	2 cut(s)	347, 766
BspT107I	GGYRCC	2 cut(s)	211, 747
BspTNI	GGTCTC	3 cut(s)	703, 776, 822
BsrFI	RCCGGY	2 cut(s)	425, 643
BsrI	ACTGG	2 cut(s)	323, 809
BssAI	RCCGGY	2 cut(s)	425, 643
BssECI	CCNNGG	2 cut(s)	535, 597
BssMI	GATC	3 cut(s)	48, 705, 722
BssNI	GRCGYC	1 cut(s)	212
BssT1I	CCWWGG	1 cut(s)	597
Bst4CI	ACNGT	3 cut(s)	436, 615, 743
Bst6I	CTCTTC	2 cut(s)	166, 563
BstACI	GRCGYC	1 cut(s)	212
BstBI	TTCGAA	2 cut(s)	347, 766
BstC8I	GCNNGC	2 cut(s)	269, 427
BstDEI	CTNAG	3 cut(s)	674, 780, 833
BstDSI	CCRYGG	2 cut(s)	535, 597
BstEII	GGTNACC	1 cut(s)	639
BstF5I	GGATG	3 cut(s)	185, 246, 853
BstFNI	CGCG	1 cut(s)	537
BstH2I	RGCGCY	1 cut(s)	215
BstHHI	GCGC	1 cut(s)	214
BstKTI	GATC	3 cut(s)	51, 708, 725
BstMAI	GTCTC	4 cut(s)	621, 703, 776, 822
BstMBI	GATC	3 cut(s)	48, 705, 722
BstMCI	CGRYCG	1 cut(s)	725
BstMWI	GCNNNNNNNGC	6 cut(s)	277, 296, 422, 670, 745, 821
BstPI	GGTNACC	1 cut(s)	639
BstSCI	CCNGG	1 cut(s)	785
BstUI	CGCG	1 cut(s)	537
BstV1I	GCAGC	3 cut(s)	166, 169, 218
BstV2I	GAAGAC	2 cut(s)	336, 760
BstX2I	RGATCY	1 cut(s)	705
BstYI	RGATCY	1 cut(s)	705
BsuI	GTATCC	1 cut(s)	785
BsuRI	GGCC	3 cut(s)	153, 596, 647
BtgI	CCRYGG	2 cut(s)	535, 597
BtsCI	GGATG	3 cut(s)	185, 246, 853
BtsI	GCAGTG	1 cut(s)	300
BtsIMutI	CAGTG	2 cut(s)	300, 682
Cac8I	GCNNGC	2 cut(s)	269, 427
CfoI	GCGC	1 cut(s)	214
Cfr10I	RCCGGY	2 cut(s)	425, 643
Cfr42I	CCGCGG	1 cut(s)	538
CseI	GACGC	1 cut(s)	64
CspCI	CAANNNNNGTGG	2 cut(s)	658, 693
CviAII	CATG	3 cut(s)	598, 635, 713
DdeI	CTNAG	3 cut(s)	674, 780, 833
DinI	GGCGCC	1 cut(s)	213
DpnI	GATC	3 cut(s)	50, 707, 724
DpnII	GATC	3 cut(s)	48, 705, 722
DriI	GACNNNNNGTC	1 cut(s)	326
EaeI	YGGCCR	2 cut(s)	594, 645
Eam1104I	CTCTTC	2 cut(s)	166, 563
Eam1105I	GACNNNNNGTC	1 cut(s)	326
EarI	CTCTTC	2 cut(s)	166, 563
EciI	GGCGGA	4 cut(s)	211, 507, 525, 617
Ecl136II	GAGCTC	1 cut(s)	824
Eco130I	CCWWGG	1 cut(s)	597
Eco24I	GRGCYC	1 cut(s)	826
Eco31I	GGTCTC	3 cut(s)	703, 776, 822
Eco53kI	GAGCTC	1 cut(s)	824
Eco88I	CYCGRG	2 cut(s)	58, 825
Eco91I	GGTNACC	1 cut(s)	639
EcoICRI	GAGCTC	1 cut(s)	824
EcoO65I	GGTNACC	1 cut(s)	639
EcoRI	GAATTC	1 cut(s)	349
EcoT14I	CCWWGG	1 cut(s)	597
EcoT38I	GRGCYC	1 cut(s)	826
EgeI	GGCGCC	1 cut(s)	213
EheI	GGCGCC	1 cut(s)	213
ErhI	CCWWGG	1 cut(s)	597
FaeI	CATG	3 cut(s)	601, 638, 716
FaiI	YATR	4 cut(s)	599, 636, 714, 799
FatI	CATG	3 cut(s)	597, 634, 712
FauI	CCCGC	4 cut(s)	197, 285, 533, 837
FbaI	TGATCA	1 cut(s)	48
FokI	GGATG	3 cut(s)	172, 233, 860
FriOI	GRGCYC	1 cut(s)	826
FspBI	CTAG	1 cut(s)	66
GlaI	GCGC	1 cut(s)	213
GsaI	CCCAGC	1 cut(s)	471
HaeII	RGCGCY	1 cut(s)	215
HaeIII	GGCC	3 cut(s)	153, 596, 647
HapII	CCGG	4 cut(s)	426, 483, 644, 787
HgaI	GACGC	1 cut(s)	64
HhaI	GCGC	1 cut(s)	214
Hin1I	GRCGYC	1 cut(s)	212
Hin1II	CATG	3 cut(s)	601, 638, 716
Hin6I	GCGC	1 cut(s)	212
HinP1I	GCGC	1 cut(s)	212
HincII	GTYRAC	1 cut(s)	79
HindII	GTYRAC	1 cut(s)	79
HindIII	AAGCTT	1 cut(s)	22
HinfI	GANTC	2 cut(s)	629, 756
HpaII	CCGG	4 cut(s)	426, 483, 644, 787
HphI	GGTGA	1 cut(s)	430
Hpy166II	GTNNAC	1 cut(s)	79
Hpy188I	TCNGA	1 cut(s)	703
Hpy188III	TCNNGA	5 cut(s)	60, 620, 685, 827, 854
Hpy8I	GTNNAC	1 cut(s)	79
Hpy99I	CGWCG	1 cut(s)	747
HpyAV	CCTTC	3 cut(s)	812, 851, 864
HpyCH4III	ACNGT	3 cut(s)	436, 615, 743
HpyCH4V	TGCA	4 cut(s)	19, 185, 457, 815
HpyF10VI	GCNNNNNNNGC	6 cut(s)	277, 296, 422, 670, 745, 821
HpyF3I	CTNAG	3 cut(s)	674, 780, 833
Hsp92I	GRCGYC	1 cut(s)	212
Hsp92II	CATG	3 cut(s)	601, 638, 716
HspAI	GCGC	1 cut(s)	212
KasI	GGCGCC	1 cut(s)	211
KroI	GCCGGC	1 cut(s)	425
KroNI	GCCGGC	1 cut(s)	427
Ksp22I	TGATCA	1 cut(s)	48
KspI	CCGCGG	1 cut(s)	538
Kzo9I	GATC	3 cut(s)	48, 705, 722
LmnI	GCTCC	3 cut(s)	434, 736, 821
Lsp1109I	GCAGC	3 cut(s)	166, 169, 218
LweI	GCATC	1 cut(s)	194
MaeI	CTAG	1 cut(s)	66
MaeIII	GTNAC	3 cut(s)	68, 436, 639
MalI	GATC	3 cut(s)	50, 707, 724
MboI	GATC	3 cut(s)	48, 705, 722
MboII	GAAGA	9 cut(s)	153, 165, 336, 439, 557, 580, 710, 755, 765
MfeI	CAATTG	1 cut(s)	839
MflI	RGATCY	1 cut(s)	705
MhlI	GDGCHC	2 cut(s)	741, 826
MluCI	AATT	5 cut(s)	30, 349, 451, 478, 839
Mly113I	GGCGCC	1 cut(s)	212
MlyI	GAGTC	1 cut(s)	750
MroNI	GCCGGC	1 cut(s)	425
MspA1I	CMGCKG	3 cut(s)	179, 209, 537
MspI	CCGG	4 cut(s)	426, 483, 644, 787
MspR9I	CCNGG	1 cut(s)	787
MunI	CAATTG	1 cut(s)	839
MvnI	CGCG	1 cut(s)	537
MwoI	GCNNNNNNNGC	6 cut(s)	277, 296, 422, 670, 745, 821
NaeI	GCCGGC	1 cut(s)	427
NarI	GGCGCC	1 cut(s)	212
NciI	CCSGG	1 cut(s)	787
NcoI	CCATGG	1 cut(s)	597
NdeII	GATC	3 cut(s)	48, 705, 722
NgoMIV	GCCGGC	1 cut(s)	425
NlaIII	CATG	3 cut(s)	601, 638, 716
NlaIV	GGNNCC	4 cut(s)	213, 430, 533, 749
NmuCI	GTSAC	2 cut(s)	68, 436
NspV	TTCGAA	2 cut(s)	347, 766
PaeR7I	CTCGAG	1 cut(s)	825
PcsI	WCGNNNNNNNCGW	1 cut(s)	859
PdiI	GCCGGC	1 cut(s)	427
PfeI	GAWTC	1 cut(s)	629
PflFI	GACNNNGTC	1 cut(s)	74
Ple19I	CGATCG	1 cut(s)	725
PleI	GAGTC	1 cut(s)	750
PluTI	GGCGCC	1 cut(s)	215
PpsI	GAGTC	1 cut(s)	750
Psp124BI	GAGCTC	1 cut(s)	826
PspEI	GGTNACC	1 cut(s)	639
PspFI	CCCAGC	1 cut(s)	467
PspN4I	GGNNCC	4 cut(s)	213, 430, 533, 749
PsuI	RGATCY	1 cut(s)	705
PsyI	GACNNNGTC	1 cut(s)	74
PvuI	CGATCG	1 cut(s)	725
SacI	GAGCTC	1 cut(s)	826
SacII	CCGCGG	1 cut(s)	538
Sau3AI	GATC	3 cut(s)	48, 705, 722
SchI	GAGTC	1 cut(s)	750
ScrFI	CCNGG	1 cut(s)	787
SduI	GDGCHC	2 cut(s)	741, 826
SfaNI	GCATC	1 cut(s)	194
SfoI	GGCGCC	1 cut(s)	213
Sfr274I	CTCGAG	1 cut(s)	825
Sfr303I	CCGCGG	1 cut(s)	538
SfuI	TTCGAA	2 cut(s)	347, 766
SgrBI	CCGCGG	1 cut(s)	538
SlaI	CTCGAG	1 cut(s)	825
SmlI	CTYRAG	2 cut(s)	618, 825
SmoI	CTYRAG	2 cut(s)	618, 825
SpeI	ACTAGT	1 cut(s)	65
Sse9I	AATT	5 cut(s)	30, 349, 451, 478, 839
SspDI	GGCGCC	1 cut(s)	211
SspMI	CTAG	1 cut(s)	66
SstI	GAGCTC	1 cut(s)	826
StyD4I	CCNGG	1 cut(s)	785
StyI	CCWWGG	1 cut(s)	597
TaaI	ACNGT	3 cut(s)	436, 615, 743
TaqI	TCGA	7 cut(s)	83, 347, 721, 766, 826, 853, 862
TasI	AATT	5 cut(s)	30, 349, 451, 478, 839
TauI	GCSGC	8 cut(s)	212, 293, 318, 425, 510, 540, 731, 793
TfiI	GAWTC	1 cut(s)	629
TscAI	CASTG	2 cut(s)	307, 682
TseFI	GTSAC	2 cut(s)	68, 436
TseI	GCWGC	3 cut(s)	179, 182, 206
Tsp45I	GTSAC	2 cut(s)	68, 436
TspRI	CASTG	2 cut(s)	307, 682
Tth111I	GACNNNGTC	1 cut(s)	74
XapI	RAATTY	2 cut(s)	30, 349
XhoI	CTCGAG	1 cut(s)	825
XspI	CTAG	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.