Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0004162

Physical Location & Seq

Genomic Coordinates Reverse (-)

35830837 .. 35835947

Gene Structure 5111 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00028120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2400 bp

ATGTTCGCAGCGTCCACCAGCATCTATACCCCCACCACCATCGCTCTCCTCCCTCCCTCCTCCGCTGATCGCAGCCGTCCAATCACCAAATGCCGCGTGTCCTCCTCCTCCACCTCCTCGCCCCTTTCTCTAAACCCTAAACCCTCCTCTTCCAATAACCACCTCCTCAAAAGCCTCGCCAAAACATTCGCCGGCGCCACCGCCGTCACCCTCATCCTAAACCTAACCAACTTCCCCGCCTTCATCGGCGGAGGCGGAGGAGGAGGTCATGGTTCCAATGGAGGCGGTAGAGGCGGAGGCGGCGGCGGCGGAGGAGGAGGGTTTTGGAGGAGGCTGTTTCGCCTGCATGCGGCGAAAGCCGACGAGCCGAACGAGTCGTGGGACTCTCACGGCTTGCCGGCCGACATTGTGGTCCAGCTCAGCAGGCTCAGCGGCTTCAAGAAGTACAAGGTCTCGGAGGTCTTGTTCTTCGACCGGAAGCGGCGGAGCACCGTCGGCGGCGACGACTCCCTCTCCGACATGGTGTCCCTCAGGCCCGGCGGCGTCTACACCAAGGCCGAGCTCCAGAACGAGCTCCAATCCCTGGCCAATTGCGGAATGTTCGAGAAGGTCGACTTCGAAGGCAAGACCAACCCGGACGGCACCCTCGCCGTCACCGTCTGGTTCACGGAGAGCACGTGGCAGGCGGCGGAGAGGTTCCGGTGCATTAACGTGGGCCTGATGGCGCAGCCCAAGCCCATTGAGATTGACCCGGACATGACCGAGAGGGAGAAGCTCCAGTATTTCAGGAACCAGGAGAGGGATTACAGGAGGAGGATGGAGAGGGCCAGGCCGTGTTTGCTGCCGGCTTCGGTGCAGAGGGAGGTGTTGGAGATGGTGAGAGAACATGGGAAGGTGAGTGCTAGGGTGTTGCAGAAGATTCAGGCCCGGGTTCTCAAGTGGTACCAAGATGAGGGGTATCTGTGTGCCAATGTTGTCAACTTTGGGAATTTGAATACGAAGGAGGTTGTGTGTGAGGTGGTGGAGGGTGATATTACTCGGCTGGTTATTCAGTTCCGGGATAAGCTTGGCAATGTTGTAGAGGGGAAGACTCAGAGTCTTGTGGTCAAGAGAGAATTGCCCAAACAGCTTCGACCAGGTAATGCATTTAACATAGAAGCAGGGAAACAAGCTCTGAGGAACTTAACCTCCCTGGGATTGTTTTCAAACATTGAAGTGAATCCAGTACCGGACGAGAAGAATGAAGGAGGGATAGTTGTTGAAATAAATCTTAAAGAACAAGAGCACAAGACTGCTGAAGTAAGCACGGAATGGAACATTGTTCGTGGACATGGAGGCTATCCCACTTTGGCTTCACTGCTACCCGGTGGAACTGTTACATTTCAACATCGGAATATCAACGGATTGAATAGGTCTCTTATTGGTTCAGTAAGCAGTAGCAACCTCTACAACCTGCAGGTTCAGGATGATCTTGAGTTTAAGCTTGAGTACGTGCATCCATATCTGGATGGTGTGGACAATCCCTGTGATCGCACTCTCCGGGTAAGCTGCTTTAATGGTCGAAAATTGAGTCCAGTCTTCACTGGTGGGCCAGGGGATGATGAAGTTCCCCCTGTATGGGTTGATCGCGCTGGCATGAAGGCTAATATAACAGAGAATTTGAGCCGTCAGAGCAAATTCACTTATGGTCTTGTGATGGAAGAGATAGCCACACGTGATGAACAAAATCATATATGTTCAAATGGCCAAAGAGTGCTGCCCAGTGGAGGTGTCAGTGAAGATGGACCTCCAACAACTCTCAGCGGTACTGGCATTGACCATGTGGCATTTTTACAGTCAAATATCACACATGACAACACCAAGTTTGTGAATGGAACCTTAGTTGGTGAGAGGAATGTGTTTCAGGTTGACCAAGGCCTTGGCATTGGCAGCAAGTTTCCATTCTTCAACCGCCACCAGTTATCATTAACAAGATTTTTCCAGCTGAAGGAAGTGGAGGAAGGTGCTGGCAAACCACCACCACCTGTTCTTGTACTTCATGGTCACTATGGTGGCTGTGTTGGAGACCTTCCAAGTTATGATGCATTTACCCTTGGGGGTCCATATTCTGTGAGAGGTTACAACATGGGTGAGATAGGCGCCGCTAGACATATCCTCGAGCTTGCAGCTGAGCTACGGATACCGGTTAAAGGTAAAAATGTATATGCATTTGTAGAACATGGTAACGATCTCGGAAGTTCAAAGGATGTCAAGGGTAACCCAACAGAGGTATACAGGCGAGTGGGTCATGGGTCATCATATGGTGTTGGTGTCAAGTTAGGTCCAGTAAGAGTGGAATATGTTGTGGATCACAACTCCGGCACAGGTTCAACATTCTTCCGATTTGGTGACCGATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006605 GO:0006810 GO:0006886 GO:0006996 GO:0007275 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009653 GO:0009657 GO:0009658 GO:0009662 GO:0009707 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009941 GO:0009987 GO:0010006 GO:0010033 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019867 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031350 GO:0031351 GO:0031354 GO:0031355 GO:0031358 GO:0031359 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0048598 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0061927 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072596 GO:0072598 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bac_surface_Ag

Protein Analysis

799

Amino Acids

87.36

Weight (kDa)

8.48

Isoelectric Point (pI)

42.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
POTRA1_3_Toc75	PF25282	133 - 224	1.6e-30	Toc75-like, POTRA domain
POTRA2_Toc75	PF25280	233 - 344	4.2e-55	Toc75-like, second POTRA domain
POTRA1_3_Toc75	PF25282	345 - 426	3.1e-25	Toc75-like, POTRA domain
Omp85	PF01103	465 - 782	8.6e-18	Omp85 superfamily domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004162)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46740 AT4G09080 AT4G09080 AT4G09080
fragaria_vesca	FvH4_3g28760 FvH4_3g28760 FvH4_3g28760 FvH4_5g29410
malus_domestica	MD03G1086500.v1.1 MD11G1095600.v1.1
prunus_persica	Prupe.6G071100_v2.0.a1
pyrus_communis	pycom03g06860 pycom11g08100 pycom11g08110
rosa_chinensis	RchiOBHm_Chr5g0052291 RchiOBHm_Chr7g0222311
rosa_laevigata	RLG00000002071 RLG00000034828
rosa_multiflora	Rmu_sc0007069.1_g000009 Rmu_sc0028377.1_g000001 Rmu_sc0032875.1_g000001 Rmu_sc0032876.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028120 Rroxscaffold_3G00237120
rosa_rugosa	Rorug05G0273100 Rorug07G0207600
rosa_samantha	Rh5CG382000 Rh5DG371900 Rh7AG349900 Rh7DG346100
rosa_wichuraiana	Rw5G032630 Rw5G032670 Rw7G029530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	410
Acc36I	ACCTGC	2 cut(s)	1447, 1461
Acc65I	GGTACC	1 cut(s)	942
AccB1I	GGYRCC	4 cut(s)	194, 641, 942, 2138
AccB7I	CCANNNNNTGG	1 cut(s)	583
AccI	GTMKAC	3 cut(s)	546, 612, 2271
AccII	CGCG	2 cut(s)	96, 1629
AclWI	GGATC	1 cut(s)	2355
AcoI	YGGCCR	3 cut(s)	399, 585, 1744
AcsI	RAATTY	3 cut(s)	988, 1657, 1676
AcuI	CTGAAG	2 cut(s)	1317, 2006
AcvI	CACGTG	2 cut(s)	678, 1715
AcyI	GRCGYC	3 cut(s)	195, 543, 2139
AfaI	GTAC	6 cut(s)	446, 944, 1227, 1490, 1807, 2034
AflIII	ACRYGT	1 cut(s)	1712
AgeI	ACCGGT	1 cut(s)	2182
AhdI	GACNNNNNGTC	2 cut(s)	523, 1095
AjnI	CCWGG	6 cut(s)	582, 792, 827, 1135, 1191, 1591
AleI	CACNNNNGTG	1 cut(s)	2049
AloI	GAACNNNNNNTCC	4 cut(s)	449, 481, 1172, 1204
Alw21I	GWGCWC	5 cut(s)	491, 564, 576, 677, 1287
Alw26I	GTCTC	3 cut(s)	457, 1419, 2058
AlwI	GGATC	1 cut(s)	2355
Ama87I	CYCGRG	2 cut(s)	927, 2156
ApeKI	GCWGC	8 cut(s)	8, 72, 727, 841, 1548, 1756, 1929, 2165
ApoI	RAATTY	3 cut(s)	988, 1657, 1676
ArsI	GACNNNNNNTTYG	2 cut(s)	1555, 1587
AsiGI	ACCGGT	1 cut(s)	2182
Asp718I	GGTACC	1 cut(s)	942
AspLEI	GCGC	4 cut(s)	197, 727, 1631, 2141
AspS9I	GGNCC	9 cut(s)	412, 534, 715, 825, 925, 1589, 1784, 2099, 2321
AsuC2I	CCSGG	8 cut(s)	537, 635, 752, 928, 929, 1058, 1365, 1541
AsuHPI	GGTGA	9 cut(s)	76, 199, 646, 889, 907, 1040, 1898, 2141, 2399
AsuII	TTCGAA	1 cut(s)	618
AvaI	CYCGRG	2 cut(s)	927, 2156
AvaII	GGWCC	4 cut(s)	412, 1784, 2099, 2321
AxyI	CCTNAGG	1 cut(s)	530
BalI	TGGCCA	2 cut(s)	587, 1746
BanI	GGYRCC	4 cut(s)	194, 641, 942, 2138
BanII	GRGCYC	2 cut(s)	564, 576
BbrPI	CACGTG	2 cut(s)	678, 1715
BbsI	GAAGAC	2 cut(s)	1094, 1570
Bbv12I	GWGCWC	5 cut(s)	491, 564, 576, 677, 1287
BbvI	GCAGC	8 cut(s)	20, 84, 739, 828, 1535, 1743, 1941, 2177
BccI	CCATC	7 cut(s)	47, 715, 811, 868, 1502, 1690, 1775
BceAI	ACGGC	7 cut(s)	60, 188, 406, 635, 655, 817, 1650
BciT130I	CCWGG	6 cut(s)	584, 794, 829, 1137, 1193, 1593
BciVI	GTATCC	1 cut(s)	2172
BcnI	CCSGG	8 cut(s)	537, 635, 752, 928, 929, 1058, 1365, 1541
BcoDI	GTCTC	3 cut(s)	457, 1419, 2058
BfaI	CTAG	2 cut(s)	903, 2145
BfmI	CTRYAG	1 cut(s)	1454
BfoI	RGCGCY	2 cut(s)	198, 2142
BfuAI	ACCTGC	2 cut(s)	1447, 1461
BfuI	GTATCC	1 cut(s)	2172
BlpI	GCTNAGC	3 cut(s)	419, 428, 2169
Bme18I	GGWCC	4 cut(s)	412, 1784, 2099, 2321
BmeRI	GACNNNNNGTC	2 cut(s)	523, 1095
BmeT110I	CYCGRG	2 cut(s)	927, 2156
BmgT120I	GGNCC	9 cut(s)	412, 534, 715, 825, 925, 1589, 1784, 2099, 2321
BmiI	GGNNCC	9 cut(s)	196, 274, 643, 698, 791, 944, 1876, 2100, 2140
BmrI	ACTGGG	1 cut(s)	1755
BmsI	GCATC	3 cut(s)	30, 1504, 2071
BmuI	ACTGGG	1 cut(s)	1755
BpiI	GAAGAC	2 cut(s)	1094, 1570
BpmI	CTGGAG	2 cut(s)	548, 761
Bpu1102I	GCTNAGC	3 cut(s)	419, 428, 2169
Bpu14I	TTCGAA	1 cut(s)	618
BpuEI	CTTGAG	3 cut(s)	920, 1493, 1505
BpuMI	CCSGG	8 cut(s)	537, 635, 752, 928, 929, 1058, 1365, 1541
BsaAI	YACGTR	3 cut(s)	678, 1492, 1715
BsaHI	GRCGYC	3 cut(s)	195, 543, 2139
BsaI	GGTCTC	3 cut(s)	457, 1419, 2058
BsaJI	CCNNGG	9 cut(s)	552, 582, 927, 1191, 1192, 1592, 1912, 1918, 2092
BsaWI	WCCGGW	4 cut(s)	474, 699, 1228, 2182
Bse118I	RCCGGY	4 cut(s)	191, 397, 844, 2182
Bse1I	ACTGG	8 cut(s)	778, 1223, 1574, 1588, 1761, 1813, 1957, 2324
Bse21I	CCTNAGG	1 cut(s)	530
Bse3DI	GCAATG	1 cut(s)	1078
BseBI	CCWGG	6 cut(s)	584, 794, 829, 1137, 1193, 1593
BseDI	CCNNGG	9 cut(s)	552, 582, 927, 1191, 1192, 1592, 1912, 1918, 2092
BseGI	GGATG	7 cut(s)	213, 822, 1471, 1495, 1513, 1603, 2251
BseMI	GCAATG	1 cut(s)	1078
BseMII	CTCAG	7 cut(s)	433, 442, 544, 1106, 1166, 1813, 2160
BseNI	ACTGG	8 cut(s)	778, 1223, 1574, 1588, 1761, 1813, 1957, 2324
BseX3I	CGGCCG	1 cut(s)	399
BseXI	GCAGC	8 cut(s)	20, 84, 739, 828, 1535, 1743, 1941, 2177
BsgI	GTGCAG	1 cut(s)	875
Bsh1236I	CGCG	2 cut(s)	96, 1629
Bsh1285I	CGRYCG	2 cut(s)	402, 475
BshNI	GGYRCC	4 cut(s)	194, 641, 942, 2138
BshTI	ACCGGT	1 cut(s)	2182
BsiEI	CGRYCG	2 cut(s)	402, 475
BsiHKAI	GWGCWC	5 cut(s)	491, 564, 576, 677, 1287
BsiHKCI	CYCGRG	2 cut(s)	927, 2156
BslFI	GGGAC	2 cut(s)	395, 511
BsmAI	GTCTC	3 cut(s)	457, 1419, 2058
BsmFI	GGGAC	2 cut(s)	395, 511
Bso31I	GGTCTC	3 cut(s)	457, 1419, 2058
BsoBI	CYCGRG	2 cut(s)	927, 2156
Bsp119I	TTCGAA	1 cut(s)	618
Bsp1286I	GDGCHC	5 cut(s)	491, 564, 576, 677, 1287
Bsp143I	GATC	6 cut(s)	67, 1468, 1528, 1624, 2227, 2347
Bsp1720I	GCTNAGC	3 cut(s)	419, 428, 2169
BspCNI	CTCAG	7 cut(s)	432, 441, 543, 1105, 1167, 1812, 2161
BspFNI	CGCG	2 cut(s)	96, 1629
BspLI	GGNNCC	9 cut(s)	196, 274, 643, 698, 791, 944, 1876, 2100, 2140
BspMAI	CTGCAG	1 cut(s)	1458
BspMI	ACCTGC	2 cut(s)	1447, 1461
BspPI	GGATC	1 cut(s)	2355
BspT104I	TTCGAA	1 cut(s)	618
BspT107I	GGYRCC	4 cut(s)	194, 641, 942, 2138
BspTNI	GGTCTC	3 cut(s)	457, 1419, 2058
BsrDI	GCAATG	1 cut(s)	1078
BsrFI	RCCGGY	4 cut(s)	191, 397, 844, 2182
BsrI	ACTGG	8 cut(s)	778, 1223, 1574, 1588, 1761, 1813, 1957, 2324
BssAI	RCCGGY	4 cut(s)	191, 397, 844, 2182
BssECI	CCNNGG	9 cut(s)	552, 582, 927, 1191, 1192, 1592, 1912, 1918, 2092
BssMI	GATC	6 cut(s)	67, 1468, 1528, 1624, 2227, 2347
BssNAI	GTATAC	1 cut(s)	2272
BssNI	GRCGYC	3 cut(s)	195, 543, 2139
BssT1I	CCWWGG	4 cut(s)	552, 1912, 1918, 2092
Bst1107I	GTATAC	1 cut(s)	2272
Bst2UI	CCWGG	6 cut(s)	584, 794, 829, 1137, 1193, 1593
Bst4CI	ACNGT	4 cut(s)	493, 658, 1375, 1836
Bst6I	CTCTTC	2 cut(s)	154, 1695
BstACI	GRCGYC	3 cut(s)	195, 543, 2139
BstBAI	YACGTR	3 cut(s)	678, 1492, 1715
BstBI	TTCGAA	1 cut(s)	618
BstDEI	CTNAG	8 cut(s)	419, 428, 530, 1092, 1175, 1799, 1879, 2169
BstEII	GGTNACC	2 cut(s)	2255, 2387
BstF5I	GGATG	7 cut(s)	213, 822, 1471, 1495, 1513, 1603, 2251
BstFNI	CGCG	2 cut(s)	96, 1629
BstH2I	RGCGCY	2 cut(s)	198, 2142
BstHHI	GCGC	4 cut(s)	197, 727, 1631, 2141
BstKTI	GATC	6 cut(s)	70, 1471, 1531, 1627, 2230, 2350
BstMAI	GTCTC	3 cut(s)	457, 1419, 2058
BstMBI	GATC	6 cut(s)	67, 1468, 1528, 1624, 2227, 2347
BstMCI	CGRYCG	2 cut(s)	402, 475
BstNI	CCWGG	6 cut(s)	584, 794, 829, 1137, 1193, 1593
BstNSI	RCATGY	1 cut(s)	350
BstPI	GGTNACC	2 cut(s)	2255, 2387
BstSFI	CTRYAG	1 cut(s)	1454
BstUI	CGCG	2 cut(s)	96, 1629
BstV1I	GCAGC	8 cut(s)	20, 84, 739, 828, 1535, 1743, 1941, 2177
BstV2I	GAAGAC	2 cut(s)	1094, 1570
BstXI	CCANNNNNNTGG	1 cut(s)	1919
BstZ17I	GTATAC	1 cut(s)	2272
BstZI	CGGCCG	1 cut(s)	399
Bsu36I	CCTNAGG	1 cut(s)	530
BsuI	GTATCC	1 cut(s)	2172
BtgZI	GCGATG	1 cut(s)	25
BtsCI	GGATG	7 cut(s)	213, 822, 1471, 1495, 1513, 1603, 2251
BtsI	GCAGTG	1 cut(s)	1355
BtsIMutI	CAGTG	4 cut(s)	1355, 1581, 1768, 1780
BveI	ACCTGC	2 cut(s)	1447, 1461
CfoI	GCGC	4 cut(s)	197, 727, 1631, 2141
Cfr10I	RCCGGY	4 cut(s)	191, 397, 844, 2182
Cfr13I	GGNCC	9 cut(s)	412, 534, 715, 825, 925, 1589, 1784, 2099, 2321
Cfr9I	CCCGGG	1 cut(s)	927
CseI	GACGC	1 cut(s)	532
CsiI	ACCWGGT	1 cut(s)	1135
Csp6I	GTAC	6 cut(s)	445, 943, 1226, 1489, 1806, 2033
CspAI	ACCGGT	1 cut(s)	2182
CviQI	GTAC	6 cut(s)	445, 943, 1226, 1489, 1806, 2033
DdeI	CTNAG	8 cut(s)	419, 428, 530, 1092, 1175, 1799, 1879, 2169
DinI	GGCGCC	2 cut(s)	196, 2140
DpnI	GATC	6 cut(s)	69, 1470, 1530, 1626, 2229, 2349
DpnII	GATC	6 cut(s)	67, 1468, 1528, 1624, 2227, 2347
DrdI	GACNNNNNNGTC	1 cut(s)	410
DriI	GACNNNNNGTC	2 cut(s)	523, 1095
DseDI	GACNNNNNNGTC	1 cut(s)	410
EaeI	YGGCCR	3 cut(s)	399, 585, 1744
EagI	CGGCCG	1 cut(s)	399
Eam1104I	CTCTTC	2 cut(s)	154, 1695
Eam1105I	GACNNNNNGTC	2 cut(s)	523, 1095
EarI	CTCTTC	2 cut(s)	154, 1695
EciI	GGCGGA	6 cut(s)	264, 270, 309, 324, 499, 704
Ecl136II	GAGCTC	2 cut(s)	562, 574
EclXI	CGGCCG	1 cut(s)	399
Eco130I	CCWWGG	4 cut(s)	552, 1912, 1918, 2092
Eco147I	AGGCCT	1 cut(s)	1917
Eco24I	GRGCYC	2 cut(s)	564, 576
Eco31I	GGTCTC	3 cut(s)	457, 1419, 2058
Eco47I	GGWCC	4 cut(s)	412, 1784, 2099, 2321
Eco52I	CGGCCG	1 cut(s)	399
Eco53kI	GAGCTC	2 cut(s)	562, 574
Eco57I	CTGAAG	2 cut(s)	1317, 2006
Eco72I	CACGTG	2 cut(s)	678, 1715
Eco81I	CCTNAGG	1 cut(s)	530
Eco88I	CYCGRG	2 cut(s)	927, 2156
Eco91I	GGTNACC	2 cut(s)	2255, 2387
EcoICRI	GAGCTC	2 cut(s)	562, 574
EcoO65I	GGTNACC	2 cut(s)	2255, 2387
EcoRII	CCWGG	6 cut(s)	582, 792, 827, 1135, 1191, 1591
EcoT14I	CCWWGG	4 cut(s)	552, 1912, 1918, 2092
EcoT22I	ATGCAT	3 cut(s)	1147, 2086, 2209
EcoT38I	GRGCYC	2 cut(s)	564, 576
EgeI	GGCGCC	2 cut(s)	196, 2140
EheI	GGCGCC	2 cut(s)	196, 2140
ErhI	CCWWGG	4 cut(s)	552, 1912, 1918, 2092
FalI	AAGNNNNNCTT	2 cut(s)	599, 631
FaqI	GGGAC	2 cut(s)	395, 511
FauI	CCCGC	1 cut(s)	244
FauNDI	CATATG	1 cut(s)	2299
FblI	GTMKAC	3 cut(s)	546, 612, 2271
FokI	GGATG	7 cut(s)	200, 829, 1478, 1482, 1520, 1610, 2258
FriOI	GRGCYC	2 cut(s)	564, 576
FspBI	CTAG	2 cut(s)	903, 2145
GlaI	GCGC	4 cut(s)	196, 726, 1630, 2140
GsuI	CTGGAG	2 cut(s)	548, 761
HaeII	RGCGCY	2 cut(s)	198, 2142
HgaI	GACGC	1 cut(s)	532
HhaI	GCGC	4 cut(s)	197, 727, 1631, 2141
Hin1I	GRCGYC	3 cut(s)	195, 543, 2139
Hin6I	GCGC	4 cut(s)	195, 725, 1629, 2139
HinP1I	GCGC	4 cut(s)	195, 725, 1629, 2139
HincII	GTYRAC	3 cut(s)	613, 979, 1909
HindII	GTYRAC	3 cut(s)	613, 979, 1909
HindIII	AAGCTT	2 cut(s)	1064, 1481
HinfI	GANTC	8 cut(s)	374, 383, 506, 919, 1090, 1096, 1219, 1570
HphI	GGTGA	9 cut(s)	76, 199, 646, 889, 907, 1040, 1898, 2141, 2399
Hpy166II	GTNNAC	9 cut(s)	15, 547, 613, 666, 979, 1328, 1516, 1909, 2272
Hpy188I	TCNGA	8 cut(s)	457, 517, 1095, 1176, 1392, 1671, 2234, 2381
Hpy188III	TCNNGA	8 cut(s)	439, 565, 604, 787, 1108, 1463, 1472, 1505
Hpy8I	GTNNAC	9 cut(s)	15, 547, 613, 666, 979, 1328, 1516, 1909, 2272
Hpy99I	CGWCG	3 cut(s)	365, 497, 506
HpyCH4III	ACNGT	4 cut(s)	493, 658, 1375, 1836
HpyCH4IV	ACGT	4 cut(s)	677, 711, 1491, 1714
HpyF3I	CTNAG	8 cut(s)	419, 428, 530, 1092, 1175, 1799, 1879, 2169
HpySE526I	ACGT	4 cut(s)	677, 711, 1491, 1714
Hsp92I	GRCGYC	3 cut(s)	195, 543, 2139
HspAI	GCGC	4 cut(s)	195, 725, 1629, 2139
KasI	GGCGCC	2 cut(s)	194, 2138
KpnI	GGTACC	1 cut(s)	946
KroI	GCCGGC	3 cut(s)	191, 397, 844
KroNI	GCCGGC	3 cut(s)	193, 399, 846
Kzo9I	GATC	6 cut(s)	67, 1468, 1528, 1624, 2227, 2347
LmnI	GCTCC	4 cut(s)	486, 567, 579, 780
Lsp1109I	GCAGC	8 cut(s)	20, 84, 739, 828, 1535, 1743, 1941, 2177
LweI	GCATC	3 cut(s)	30, 1504, 2071
MabI	ACCWGGT	1 cut(s)	1135
MaeI	CTAG	2 cut(s)	903, 2145
MaeII	ACGT	4 cut(s)	677, 711, 1491, 1714
MaeIII	GTNAC	8 cut(s)	205, 652, 1375, 2042, 2117, 2222, 2255, 2387
MalI	GATC	6 cut(s)	69, 1470, 1530, 1626, 2229, 2349
MboI	GATC	6 cut(s)	67, 1468, 1528, 1624, 2227, 2347
MfeI	CAATTG	1 cut(s)	589
MhlI	GDGCHC	5 cut(s)	491, 564, 576, 677, 1287
MlsI	TGGCCA	2 cut(s)	587, 1746
MluCI	AATT	6 cut(s)	589, 988, 1115, 1565, 1657, 1676
MluNI	TGGCCA	2 cut(s)	587, 1746
Mly113I	GGCGCC	2 cut(s)	195, 2139
MlyI	GAGTC	6 cut(s)	377, 383, 500, 1084, 1105, 1579
MmeI	TCCRAC	4 cut(s)	540, 849, 1814, 2041
Mox20I	TGGCCA	2 cut(s)	587, 1746
Mph1103I	ATGCAT	3 cut(s)	1147, 2086, 2209
MreI	CGCCGGCG	1 cut(s)	191
MroNI	GCCGGC	3 cut(s)	191, 397, 844
MscI	TGGCCA	2 cut(s)	587, 1746
MseI	TTAA	8 cut(s)	708, 1149, 1184, 1272, 1479, 1554, 1967, 2187
MslI	CAYNNNNRTG	3 cut(s)	710, 1214, 2049
Msp20I	TGGCCA	2 cut(s)	587, 1746
MspA1I	CMGCKG	5 cut(s)	65, 432, 1803, 1984, 2168
MunI	CAATTG	1 cut(s)	589
MvaI	CCWGG	6 cut(s)	584, 794, 829, 1137, 1193, 1593
MvnI	CGCG	2 cut(s)	96, 1629
NaeI	GCCGGC	3 cut(s)	193, 399, 846
NarI	GGCGCC	2 cut(s)	195, 2139
NciI	CCSGG	8 cut(s)	537, 635, 752, 928, 929, 1058, 1365, 1541
NdeI	CATATG	1 cut(s)	2299
NdeII	GATC	6 cut(s)	67, 1468, 1528, 1624, 2227, 2347
NgoMIV	GCCGGC	3 cut(s)	191, 397, 844
NlaIV	GGNNCC	9 cut(s)	196, 274, 643, 698, 791, 944, 1876, 2100, 2140
NmeAIII	GCCGAG	2 cut(s)	583, 1018
NmuCI	GTSAC	4 cut(s)	205, 652, 2042, 2387
NsiI	ATGCAT	3 cut(s)	1147, 2086, 2209
NspI	RCATGY	1 cut(s)	350
NspV	TTCGAA	1 cut(s)	618
OliI	CACNNNNGTG	1 cut(s)	2049
PaeI	GCATGC	1 cut(s)	350
PaeR7I	CTCGAG	1 cut(s)	2156
PasI	CCCWGGG	1 cut(s)	1192
PceI	AGGCCT	1 cut(s)	1917
PcsI	WCGNNNNNNNCGW	5 cut(s)	369, 501, 609, 654, 674
PdiI	GCCGGC	3 cut(s)	193, 399, 846
PfeI	GAWTC	2 cut(s)	919, 1219
PflMI	CCANNNNNTGG	1 cut(s)	583
PfoI	TCCNGGA	1 cut(s)	1056
PinAI	ACCGGT	1 cut(s)	2182
PleI	GAGTC	6 cut(s)	377, 382, 500, 1084, 1104, 1578
PluTI	GGCGCC	2 cut(s)	198, 2142
PmaCI	CACGTG	2 cut(s)	678, 1715
PmlI	CACGTG	2 cut(s)	678, 1715
PpsI	GAGTC	6 cut(s)	377, 382, 500, 1084, 1104, 1578
Ppu21I	YACGTR	3 cut(s)	678, 1492, 1715
Psp124BI	GAGCTC	2 cut(s)	564, 576
Psp6I	CCWGG	6 cut(s)	582, 792, 827, 1135, 1191, 1591
PspCI	CACGTG	2 cut(s)	678, 1715
PspEI	GGTNACC	2 cut(s)	2255, 2387
PspGI	CCWGG	6 cut(s)	582, 792, 827, 1135, 1191, 1591
PspN4I	GGNNCC	9 cut(s)	196, 274, 643, 698, 791, 944, 1876, 2100, 2140
PspPI	GGNCC	9 cut(s)	412, 534, 715, 825, 925, 1589, 1784, 2099, 2321
PspXI	VCTCGAGB	1 cut(s)	2156
PstI	CTGCAG	1 cut(s)	1458
PvuII	CAGCTG	2 cut(s)	1984, 2168
RsaI	GTAC	6 cut(s)	446, 944, 1227, 1490, 1807, 2034
RsaNI	GTAC	6 cut(s)	445, 943, 1226, 1489, 1806, 2033
RseI	CAYNNNNRTG	3 cut(s)	710, 1214, 2049
SacI	GAGCTC	2 cut(s)	564, 576
SalI	GTCGAC	1 cut(s)	611
SaqAI	TTAA	8 cut(s)	708, 1149, 1184, 1272, 1479, 1554, 1967, 2187
Sau3AI	GATC	6 cut(s)	67, 1468, 1528, 1624, 2227, 2347
Sau96I	GGNCC	9 cut(s)	412, 534, 715, 825, 925, 1589, 1784, 2099, 2321
SbfI	CCTGCAGG	1 cut(s)	1458
SchI	GAGTC	6 cut(s)	377, 383, 500, 1084, 1105, 1579
SdaI	CCTGCAGG	1 cut(s)	1458
SduI	GDGCHC	5 cut(s)	491, 564, 576, 677, 1287
SexAI	ACCWGGT	1 cut(s)	1135
SfaNI	GCATC	3 cut(s)	30, 1504, 2071
SfcI	CTRYAG	1 cut(s)	1454
SfoI	GGCGCC	2 cut(s)	196, 2140
Sfr274I	CTCGAG	1 cut(s)	2156
SfuI	TTCGAA	1 cut(s)	618
SgrAI	CRCCGGYG	1 cut(s)	191
SinI	GGWCC	4 cut(s)	412, 1784, 2099, 2321
SlaI	CTCGAG	1 cut(s)	2156
SmaI	CCCGGG	1 cut(s)	929
SmiMI	CAYNNNNRTG	3 cut(s)	710, 1214, 2049
SmlI	CTYRAG	4 cut(s)	935, 1472, 1484, 2156
SmoI	CTYRAG	4 cut(s)	935, 1472, 1484, 2156
SphI	GCATGC	1 cut(s)	350
Sse8387I	CCTGCAGG	1 cut(s)	1458
Sse9I	AATT	6 cut(s)	589, 988, 1115, 1565, 1657, 1676
SseBI	AGGCCT	1 cut(s)	1917
SspDI	GGCGCC	2 cut(s)	194, 2138
SspMI	CTAG	2 cut(s)	903, 2145
SstI	GAGCTC	2 cut(s)	564, 576
StuI	AGGCCT	1 cut(s)	1917
StyI	CCWWGG	4 cut(s)	552, 1912, 1918, 2092
TaaI	ACNGT	4 cut(s)	493, 658, 1375, 1836
TaiI	ACGT	4 cut(s)	680, 714, 1494, 1717
TaqI	TCGA	7 cut(s)	471, 603, 612, 618, 1132, 1561, 2157
TaqII	GACCGA	1 cut(s)	776
TasI	AATT	6 cut(s)	589, 988, 1115, 1565, 1657, 1676
TatI	WGTACW	2 cut(s)	444, 2032
TfiI	GAWTC	2 cut(s)	919, 1219
Tru1I	TTAA	8 cut(s)	708, 1149, 1184, 1272, 1479, 1554, 1967, 2187
Tru9I	TTAA	8 cut(s)	708, 1149, 1184, 1272, 1479, 1554, 1967, 2187
TscAI	CASTG	4 cut(s)	1362, 1588, 1768, 1780
TseFI	GTSAC	4 cut(s)	205, 652, 2042, 2387
TseI	GCWGC	8 cut(s)	8, 72, 727, 841, 1548, 1756, 1929, 2165
Tsp45I	GTSAC	4 cut(s)	205, 652, 2042, 2387
TspDTI	ATGAA	6 cut(s)	232, 1257, 1617, 1652, 1734, 2027
TspGWI	ACGGA	4 cut(s)	683, 1322, 1416, 2191
TspMI	CCCGGG	1 cut(s)	927
TspRI	CASTG	4 cut(s)	1362, 1588, 1768, 1780
Van91I	CCANNNNNTGG	1 cut(s)	583
VpaK11BI	GGWCC	4 cut(s)	412, 1784, 2099, 2321
XapI	RAATTY	3 cut(s)	988, 1657, 1676
XceI	RCATGY	1 cut(s)	350
XhoI	CTCGAG	1 cut(s)	2156
XmaI	CCCGGG	1 cut(s)	927
XmiI	GTMKAC	3 cut(s)	546, 612, 2271
XspI	CTAG	2 cut(s)	903, 2145
Zsp2I	ATGCAT	3 cut(s)	1147, 2086, 2209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.