Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005250

Physical Location & Seq

Genomic Coordinates Reverse (-)

6645553 .. 6646400

Gene Structure 848 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G10810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGGATAACAGCAGCAGCATCAATTCCACCGCTTCCACGGCCTCAAATCTGAGCACGGCTTCTCTGGAAAAGCTAGATCAAGCGGCGAGCTGGGTCAGCACCACCGTTATTTCCGCCTTCTTCGCCTCCCTCGAGCGTTGCTCATGCGTTAACCTATCTACCTCCGATGATGACGATGAAGGCGAAGAATCTCACAACCGTCCCCTTGCTCTCTCCGCCGCTCCTCACCCAGACGACATCGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

81

Amino Acids

8.49

Weight (kDa)

4.05

Isoelectric Point (pI)

26.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005250)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10810 AT4G24026
fragaria_vesca	FvH4_5g11470
malus_domestica	MD06G1113400.v1.1 MD14G1134500.v1.1
prunus_persica	Prupe.5G126200_v2.0.a1
pyrus_communis	pycom06g10600
rosa_chinensis	RchiOBHm_Chr7g0186341
rosa_laevigata	RLG00000002143 RLG00000011413 RLG00000018050 RLG00000022479 RLG00000023922
rosa_multiflora	Rmu_sc0000645.1_g000049
rosa_roxburghii	Rroxscaffold_3G00236320 Rroxscaffold_6G00405670
rosa_rugosa	Rorug06G0473600
rosa_samantha	Rh1AG244700 Rh1BG185600 Rh1CG228500 Rh1DG011600 Rh1DG169800 Rh1DG215300 Rh2AG461800 Rh2CG448800 Rh6AG315700 Rh6BG340900 Rh6CG328700
rosa_wichuraiana	Rw7G006740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	221
AciI	CCGC	5 cut(s)	30, 83, 114, 216, 219
AluBI	AGCT	2 cut(s)	73, 90
AluI	AGCT	2 cut(s)	73, 90
Alw21I	GWGCWC	1 cut(s)	56
Ama87I	CYCGRG	1 cut(s)	131
AoxI	GGCC	1 cut(s)	39
ApeKI	GCWGC	2 cut(s)	12, 15
AsuHPI	GGTGA	1 cut(s)	218
AvaI	CYCGRG	1 cut(s)	131
Bbv12I	GWGCWC	1 cut(s)	56
BbvI	GCAGC	2 cut(s)	24, 27
BceAI	ACGGC	2 cut(s)	54, 72
BfaI	CTAG	1 cut(s)	74
BisI	GCNGC	4 cut(s)	13, 16, 84, 219
BlsI	GCNGC	4 cut(s)	14, 17, 85, 220
BmeT110I	CYCGRG	1 cut(s)	131
BmsI	GCATC	1 cut(s)	27
BplI	GAGNNNNNCTC	2 cut(s)	125, 157
BsaJI	CCNNGG	1 cut(s)	36
BseDI	CCNNGG	1 cut(s)	36
BseMII	CTCAG	1 cut(s)	41
BseRI	GAGGAG	1 cut(s)	213
BseXI	GCAGC	2 cut(s)	24, 27
BseYI	CCCAGC	1 cut(s)	90
BshFI	GGCC	1 cut(s)	41
BsiHKAI	GWGCWC	1 cut(s)	56
BsiHKCI	CYCGRG	1 cut(s)	131
BslFI	GGGAC	1 cut(s)	186
BsmFI	GGGAC	1 cut(s)	186
BsnI	GGCC	1 cut(s)	41
BsoBI	CYCGRG	1 cut(s)	131
Bsp1286I	GDGCHC	1 cut(s)	56
Bsp143I	GATC	1 cut(s)	76
BspACI	CCGC	5 cut(s)	30, 83, 114, 216, 219
BspANI	GGCC	1 cut(s)	41
BspCNI	CTCAG	1 cut(s)	42
BsrBI	CCGCTC	1 cut(s)	221
BssECI	CCNNGG	1 cut(s)	36
BssMI	GATC	1 cut(s)	76
Bst4CI	ACNGT	2 cut(s)	106, 200
BstC8I	GCNNGC	1 cut(s)	88
BstDEI	CTNAG	1 cut(s)	50
BstDSI	CCRYGG	1 cut(s)	36
BstKTI	GATC	1 cut(s)	79
BstMBI	GATC	1 cut(s)	76
BstMWI	GCNNNNNNNGC	4 cut(s)	38, 96, 122, 215
BstV1I	GCAGC	2 cut(s)	24, 27
BsuRI	GGCC	1 cut(s)	41
BtgI	CCRYGG	1 cut(s)	36
Cac8I	GCNNGC	1 cut(s)	88
CviAII	CATG	1 cut(s)	144
CviJI	RGCY	4 cut(s)	41, 59, 73, 90
CviKI_1	RGCY	4 cut(s)	41, 59, 73, 90
DdeI	CTNAG	1 cut(s)	50
DpnI	GATC	1 cut(s)	78
DpnII	GATC	1 cut(s)	76
EciI	GGCGGA	2 cut(s)	103, 205
Eco88I	CYCGRG	1 cut(s)	131
FaeI	CATG	1 cut(s)	147
FaiI	YATR	1 cut(s)	145
FaqI	GGGAC	1 cut(s)	186
FatI	CATG	1 cut(s)	143
Fnu4HI	GCNGC	4 cut(s)	13, 16, 84, 219
Fsp4HI	GCNGC	4 cut(s)	13, 16, 84, 219
FspBI	CTAG	1 cut(s)	74
GluI	GCNGC	4 cut(s)	13, 16, 84, 219
GsaI	CCCAGC	1 cut(s)	94
HaeIII	GGCC	1 cut(s)	41
Hin1II	CATG	1 cut(s)	147
HincII	GTYRAC	1 cut(s)	151
HindII	GTYRAC	1 cut(s)	151
HinfI	GANTC	1 cut(s)	188
HpaI	GTTAAC	1 cut(s)	151
HphI	GGTGA	1 cut(s)	218
Hpy166II	GTNNAC	1 cut(s)	151
Hpy188I	TCNGA	2 cut(s)	51, 166
Hpy188III	TCNNGA	1 cut(s)	65
Hpy8I	GTNNAC	1 cut(s)	151
HpyAV	CCTTC	2 cut(s)	127, 173
HpyCH4III	ACNGT	2 cut(s)	106, 200
HpyF10VI	GCNNNNNNNGC	4 cut(s)	38, 96, 122, 215
HpyF3I	CTNAG	1 cut(s)	50
Hsp92II	CATG	1 cut(s)	147
KspAI	GTTAAC	1 cut(s)	151
Kzo9I	GATC	1 cut(s)	76
LmnI	GCTCC	1 cut(s)	226
LpnPI	CCDG	2 cut(s)	50, 76
Lsp1109I	GCAGC	2 cut(s)	24, 27
LweI	GCATC	1 cut(s)	27
MaeI	CTAG	1 cut(s)	74
MalI	GATC	1 cut(s)	78
MbiI	CCGCTC	1 cut(s)	221
MboI	GATC	1 cut(s)	76
MboII	GAAGA	2 cut(s)	112, 197
MhlI	GDGCHC	1 cut(s)	56
MluCI	AATT	1 cut(s)	22
MnlI	CCTC	5 cut(s)	52, 136, 140, 172, 234
MseI	TTAA	1 cut(s)	150
MwoI	GCNNNNNNNGC	4 cut(s)	38, 96, 122, 215
NdeII	GATC	1 cut(s)	76
NlaIII	CATG	1 cut(s)	147
PaeR7I	CTCGAG	1 cut(s)	131
PcsI	WCGNNNNNNNCGW	2 cut(s)	129, 180
PfeI	GAWTC	1 cut(s)	188
PkrI	GCNGC	4 cut(s)	14, 17, 85, 220
PspFI	CCCAGC	1 cut(s)	90
PspXI	VCTCGAGB	1 cut(s)	131
SaqAI	TTAA	1 cut(s)	150
SatI	GCNGC	4 cut(s)	13, 16, 84, 219
Sau3AI	GATC	1 cut(s)	76
SduI	GDGCHC	1 cut(s)	56
SetI	ASST	4 cut(s)	75, 92, 156, 164
SfaNI	GCATC	1 cut(s)	27
Sfr274I	CTCGAG	1 cut(s)	131
SlaI	CTCGAG	1 cut(s)	131
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
Sse9I	AATT	1 cut(s)	22
SsiI	CCGC	5 cut(s)	30, 83, 114, 216, 219
SspMI	CTAG	1 cut(s)	74
TaaI	ACNGT	2 cut(s)	106, 200
TaqI	TCGA	1 cut(s)	132
TasI	AATT	1 cut(s)	22
TauI	GCSGC	2 cut(s)	86, 221
TfiI	GAWTC	1 cut(s)	188
Tru1I	TTAA	1 cut(s)	150
Tru9I	TTAA	1 cut(s)	150
TseI	GCWGC	2 cut(s)	12, 15
TspDTI	ATGAA	1 cut(s)	192
XhoI	CTCGAG	1 cut(s)	131
XspI	CTAG	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.