Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0005250

Physical Location & Seq

Genomic Coordinates Reverse (-)

1911572 .. 1911778

Gene Structure 207 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG011600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 207 bp

ATGTCGTCATCCCCCATCATCGAGCACATCGTCCTCTTCAAGGTCAAAGACGACATCGATCCCTCCAAGGTCAACGACCTTACCTCCCTCGGTCTCACCCCATCTCTCCGTCGGTCCCCTCCTCTGCACCCGATCCTCCCTCTTCGCCTTCAGTCACCGAGTCAACGCCGCAGCGATCTCCGAGTCGTTACAGATCTCCGTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009753 GO:0009814 GO:0009817 GO:0010033 GO:0042221 GO:0042579 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Dabb

Protein Analysis

68

Amino Acids

7.62

Weight (kDa)

10.23

Isoelectric Point (pI)

117.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005250)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10810 AT4G24026
fragaria_vesca	FvH4_5g11470
malus_domestica	MD06G1113400.v1.1 MD14G1134500.v1.1
prunus_persica	Prupe.5G126200_v2.0.a1
pyrus_communis	pycom06g10600
rosa_chinensis	RchiOBHm_Chr7g0186341
rosa_laevigata	RLG00000002143 RLG00000011413 RLG00000018050 RLG00000022479 RLG00000023922
rosa_multiflora	Rmu_sc0000645.1_g000049
rosa_roxburghii	Rroxscaffold_3G00236320 Rroxscaffold_6G00405670
rosa_rugosa	Rorug06G0473600
rosa_samantha	Rh1AG244700 Rh1BG185600 Rh1CG228500 Rh1DG011600 Rh1DG169800 Rh1DG215300 Rh2AG461800 Rh2CG448800 Rh6AG315700 Rh6BG340900 Rh6CG328700
rosa_wichuraiana	Rw7G006740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	169
AclWI	GGATC	2 cut(s)	53, 127
AcuI	CTGAAG	1 cut(s)	134
AfiI	CCNNNNNNNGG	1 cut(s)	40
AgsI	TTSAA	1 cut(s)	40
Alw21I	GWGCWC	1 cut(s)	27
Alw26I	GTCTC	1 cut(s)	98
AlwI	GGATC	2 cut(s)	53, 127
ApeKI	GCWGC	1 cut(s)	171
AspS9I	GGNCC	1 cut(s)	114
AsuHPI	GGTGA	2 cut(s)	88, 147
AvaII	GGWCC	1 cut(s)	114
Bbv12I	GWGCWC	1 cut(s)	27
BbvI	GCAGC	1 cut(s)	183
BccI	CCATC	2 cut(s)	23, 109
BcoDI	GTCTC	1 cut(s)	98
BglII	AGATCT	1 cut(s)	193
BisI	GCNGC	2 cut(s)	169, 172
BlsI	GCNGC	2 cut(s)	170, 173
Bme18I	GGWCC	1 cut(s)	114
BmgT120I	GGNCC	1 cut(s)	114
BmiI	GGNNCC	1 cut(s)	116
Bsa29I	ATCGAT	1 cut(s)	57
BsaI	GGTCTC	1 cut(s)	98
BsaJI	CCNNGG	2 cut(s)	66, 88
BsaXI	ACNNNNNCTCC	2 cut(s)	68, 98
Bsc4I	CCNNNNNNNGG	1 cut(s)	40
BseCI	ATCGAT	1 cut(s)	57
BseDI	CCNNGG	2 cut(s)	66, 88
BseGI	GGATG	1 cut(s)	8
BseLI	CCNNNNNNNGG	1 cut(s)	40
BseRI	GAGGAG	1 cut(s)	111
BseXI	GCAGC	1 cut(s)	183
BsgI	GTGCAG	1 cut(s)	110
BshVI	ATCGAT	1 cut(s)	57
BsiHKAI	GWGCWC	1 cut(s)	27
BslFI	GGGAC	1 cut(s)	100
BslI	CCNNNNNNNGG	1 cut(s)	40
BsmAI	GTCTC	1 cut(s)	98
BsmFI	GGGAC	1 cut(s)	100
Bso31I	GGTCTC	1 cut(s)	98
Bsp1286I	GDGCHC	1 cut(s)	27
Bsp143I	GATC	4 cut(s)	58, 132, 175, 193
BspACI	CCGC	1 cut(s)	169
BspDI	ATCGAT	1 cut(s)	57
BspLI	GGNNCC	1 cut(s)	116
BspPI	GGATC	2 cut(s)	53, 127
BspTNI	GGTCTC	1 cut(s)	98
BssECI	CCNNGG	2 cut(s)	66, 88
BssMI	GATC	4 cut(s)	58, 132, 175, 193
BssT1I	CCWWGG	1 cut(s)	66
Bst6I	CTCTTC	2 cut(s)	41, 147
BstENI	CCTNNNNNAGG	1 cut(s)	38
BstF5I	GGATG	1 cut(s)	8
BstKTI	GATC	4 cut(s)	61, 135, 178, 196
BstMAI	GTCTC	1 cut(s)	98
BstMBI	GATC	4 cut(s)	58, 132, 175, 193
BstV1I	GCAGC	1 cut(s)	183
BstX2I	RGATCY	1 cut(s)	193
BstYI	RGATCY	1 cut(s)	193
Bsu15I	ATCGAT	1 cut(s)	57
BsuTUI	ATCGAT	1 cut(s)	57
BtsCI	GGATG	1 cut(s)	8
Cfr13I	GGNCC	1 cut(s)	114
ClaI	ATCGAT	1 cut(s)	57
CviAII	CATG	1 cut(s)	204
DpnI	GATC	4 cut(s)	60, 134, 177, 195
DpnII	GATC	4 cut(s)	58, 132, 175, 193
Eam1104I	CTCTTC	2 cut(s)	41, 147
EarI	CTCTTC	2 cut(s)	41, 147
Eco130I	CCWWGG	1 cut(s)	66
Eco31I	GGTCTC	1 cut(s)	98
Eco47I	GGWCC	1 cut(s)	114
Eco57I	CTGAAG	1 cut(s)	134
EcoNI	CCTNNNNNAGG	1 cut(s)	38
EcoT14I	CCWWGG	1 cut(s)	66
ErhI	CCWWGG	1 cut(s)	66
FaeI	CATG	1 cut(s)	207
FaiI	YATR	1 cut(s)	205
FaqI	GGGAC	1 cut(s)	100
FatI	CATG	1 cut(s)	203
Fnu4HI	GCNGC	2 cut(s)	169, 172
Fsp4HI	GCNGC	2 cut(s)	169, 172
GluI	GCNGC	2 cut(s)	169, 172
Hin1II	CATG	1 cut(s)	207
HincII	GTYRAC	2 cut(s)	73, 164
HindII	GTYRAC	2 cut(s)	73, 164
HinfI	GANTC	2 cut(s)	160, 183
HphI	GGTGA	2 cut(s)	88, 147
Hpy166II	GTNNAC	2 cut(s)	73, 164
Hpy188I	TCNGA	1 cut(s)	182
Hpy8I	GTNNAC	2 cut(s)	73, 164
Hpy99I	CGWCG	1 cut(s)	114
HpyAV	CCTTC	1 cut(s)	158
HpyCH4V	TGCA	2 cut(s)	127, 203
Hsp92II	CATG	1 cut(s)	207
Kzo9I	GATC	4 cut(s)	58, 132, 175, 193
Lsp1109I	GCAGC	1 cut(s)	183
MaeIII	GTNAC	2 cut(s)	153, 187
MalI	GATC	4 cut(s)	60, 134, 177, 195
MboI	GATC	4 cut(s)	58, 132, 175, 193
MboII	GAAGA	2 cut(s)	28, 134
MflI	RGATCY	1 cut(s)	193
MhlI	GDGCHC	1 cut(s)	27
MlyI	GAGTC	2 cut(s)	169, 192
MnlI	CCTC	8 cut(s)	44, 73, 94, 98, 129, 132, 146, 150
NdeII	GATC	4 cut(s)	58, 132, 175, 193
NlaIII	CATG	1 cut(s)	207
NlaIV	GGNNCC	1 cut(s)	116
NmuCI	GTSAC	1 cut(s)	153
PcsI	WCGNNNNNNNCGW	1 cut(s)	27
PkrI	GCNGC	2 cut(s)	170, 173
PleI	GAGTC	2 cut(s)	168, 191
PpsI	GAGTC	2 cut(s)	168, 191
PspN4I	GGNNCC	1 cut(s)	116
PspPI	GGNCC	1 cut(s)	114
PsuI	RGATCY	1 cut(s)	193
SatI	GCNGC	2 cut(s)	169, 172
Sau3AI	GATC	4 cut(s)	58, 132, 175, 193
Sau96I	GGNCC	1 cut(s)	114
SchI	GAGTC	2 cut(s)	169, 192
SduI	GDGCHC	1 cut(s)	27
SetI	ASST	4 cut(s)	45, 72, 81, 86
SgeI	CNNG	7 cut(s)	34, 52, 79, 101, 142, 171, 194
SinI	GGWCC	1 cut(s)	114
SsiI	CCGC	1 cut(s)	169
StyI	CCWWGG	1 cut(s)	66
TaqI	TCGA	2 cut(s)	21, 57
TaqII	GACCGA	2 cut(s)	80, 102
TauI	GCSGC	1 cut(s)	171
TseFI	GTSAC	1 cut(s)	153
TseI	GCWGC	1 cut(s)	171
Tsp45I	GTSAC	1 cut(s)	153
TspGWI	ACGGA	2 cut(s)	98, 188
VpaK11BI	GGWCC	1 cut(s)	114
XagI	CCTNNNNNAGG	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.