Rmu_sc0000645.1_g000049

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000645.1
OG0005250
Physical Location & Seq
Reverse (-)
204587 .. 204856
270 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000645.1_g000049.1.cds

Sequence Viewer

Length: 270 bp
atggaagacggcaaccccaaccccaaccccaataacgccataatctcccgggagacgattgactcggtcgccggctgggtcagcgccaccgtctcctccgccttcttctcctccctcgagcgcttctcctgcgtcaacgtcgccaccacggacgccgacgaggacgacgatgacgacgaggccgcccaccgccctctcgctctcaccgatctcacccaccccgatcaacagcaccaccacgcaaacgacgtcgctcagctccccgtctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

9.63

Weight (kDa)

4.13

Isoelectric Point (pI)

29.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 252
AciI CCGC 3 cut(s) 99, 183, 190
AcyI GRCGYC 2 cut(s) 153, 249
AfeI AGCGCT 1 cut(s) 122
AluBI AGCT 1 cut(s) 259
AluI AGCT 1 cut(s) 259
Alw26I GTCTC 2 cut(s) 47, 97
Ama87I CYCGRG 2 cut(s) 48, 116
Aor51HI AGCGCT 1 cut(s) 122
AoxI GGCC 1 cut(s) 180
AspLEI GCGC 2 cut(s) 86, 123
AsuC2I CCSGG 2 cut(s) 49, 50
AsuHPI GGTGA 2 cut(s) 196, 205
AvaI CYCGRG 2 cut(s) 48, 116
BbsI GAAGAC 1 cut(s) 12
BceAI ACGGC 1 cut(s) 25
BcnI CCSGG 2 cut(s) 49, 50
BcoDI GTCTC 2 cut(s) 47, 97
BfoI RGCGCY 2 cut(s) 87, 124
BisI GCNGC 1 cut(s) 183
BlpI GCTNAGC 1 cut(s) 255
BlsI GCNGC 1 cut(s) 184
Bme1390I CCNGG 2 cut(s) 49, 50
BmeT110I CYCGRG 2 cut(s) 48, 116
BmrFI CCNGG 2 cut(s) 49, 50
BpiI GAAGAC 1 cut(s) 12
BplI GAGNNNNNCTC 2 cut(s) 110, 142
Bpu1102I GCTNAGC 1 cut(s) 255
BpuMI CCSGG 2 cut(s) 49, 50
BsaHI GRCGYC 2 cut(s) 153, 249
BsaJI CCNNGG 2 cut(s) 48, 147
Bse118I RCCGGY 1 cut(s) 71
BseDI CCNNGG 2 cut(s) 48, 147
BseMII CTCAG 1 cut(s) 269
BseRI GAGGAG 2 cut(s) 85, 100
BseYI CCCAGC 1 cut(s) 75
Bsh1285I CGRYCG 1 cut(s) 69
BshFI GGCC 1 cut(s) 182
BsiEI CGRYCG 1 cut(s) 69
BsiHKCI CYCGRG 2 cut(s) 48, 116
BsiSI CCGG 2 cut(s) 49, 72
BsmAI GTCTC 2 cut(s) 47, 97
BsmBI CGTCTC 2 cut(s) 47, 97
BsnI GGCC 1 cut(s) 182
BsoBI CYCGRG 2 cut(s) 48, 116
Bsp143I GATC 2 cut(s) 208, 223
Bsp1720I GCTNAGC 1 cut(s) 255
BspACI CCGC 3 cut(s) 99, 183, 190
BspANI GGCC 1 cut(s) 182
BspCNI CTCAG 1 cut(s) 268
BsrFI RCCGGY 1 cut(s) 71
BssAI RCCGGY 1 cut(s) 71
BssECI CCNNGG 2 cut(s) 48, 147
BssMI GATC 2 cut(s) 208, 223
BssNI GRCGYC 2 cut(s) 153, 249
Bst4CI ACNGT 1 cut(s) 91
BstACI GRCGYC 2 cut(s) 153, 249
BstC8I GCNNGC 1 cut(s) 73
BstDEI CTNAG 1 cut(s) 255
BstDSI CCRYGG 1 cut(s) 147
BstH2I RGCGCY 2 cut(s) 87, 124
BstHHI GCGC 2 cut(s) 86, 123
BstKTI GATC 2 cut(s) 211, 226
BstMAI GTCTC 2 cut(s) 47, 97
BstMBI GATC 2 cut(s) 208, 223
BstMCI CGRYCG 1 cut(s) 69
BstMWI GCNNNNNNNGC 2 cut(s) 81, 129
BstSCI CCNGG 2 cut(s) 47, 48
BstV2I GAAGAC 1 cut(s) 12
BsuRI GGCC 1 cut(s) 182
BtgI CCRYGG 1 cut(s) 147
Cac8I GCNNGC 1 cut(s) 73
CfoI GCGC 2 cut(s) 86, 123
Cfr10I RCCGGY 1 cut(s) 71
Cfr9I CCCGGG 1 cut(s) 48
CseI GACGC 2 cut(s) 121, 161
CviJI RGCY 3 cut(s) 75, 182, 259
CviKI_1 RGCY 3 cut(s) 75, 182, 259
DdeI CTNAG 1 cut(s) 255
DpnI GATC 2 cut(s) 210, 225
DpnII GATC 2 cut(s) 208, 223
EciI GGCGGA 1 cut(s) 88
Eco47III AGCGCT 1 cut(s) 122
Eco88I CYCGRG 2 cut(s) 48, 116
Esp3I CGTCTC 2 cut(s) 47, 97
FaiI YATR 1 cut(s) 41
Fnu4HI GCNGC 1 cut(s) 183
Fsp4HI GCNGC 1 cut(s) 183
GlaI GCGC 2 cut(s) 85, 122
GluI GCNGC 1 cut(s) 183
GsaI CCCAGC 1 cut(s) 79
HaeII RGCGCY 2 cut(s) 87, 124
HaeIII GGCC 1 cut(s) 182
HapII CCGG 2 cut(s) 49, 72
HgaI GACGC 2 cut(s) 121, 161
HhaI GCGC 2 cut(s) 86, 123
Hin1I GRCGYC 2 cut(s) 153, 249
Hin6I GCGC 2 cut(s) 84, 121
HinP1I GCGC 2 cut(s) 84, 121
HincII GTYRAC 1 cut(s) 136
HindII GTYRAC 1 cut(s) 136
HinfI GANTC 1 cut(s) 62
HpaII CCGG 2 cut(s) 49, 72
HphI GGTGA 2 cut(s) 196, 205
Hpy166II GTNNAC 1 cut(s) 136
Hpy188I TCNGA 1 cut(s) 269
Hpy8I GTNNAC 1 cut(s) 136
Hpy99I CGWCG 6 cut(s) 143, 161, 170, 179, 251, 254
HpyAV CCTTC 1 cut(s) 112
HpyCH4III ACNGT 1 cut(s) 91
HpyCH4IV ACGT 2 cut(s) 138, 249
HpyF10VI GCNNNNNNNGC 2 cut(s) 81, 129
HpyF3I CTNAG 1 cut(s) 255
HpySE526I ACGT 2 cut(s) 138, 249
Hsp92I GRCGYC 2 cut(s) 153, 249
HspAI GCGC 2 cut(s) 84, 121
KroI GCCGGC 1 cut(s) 71
KroNI GCCGGC 1 cut(s) 73
Kzo9I GATC 2 cut(s) 208, 223
LmnI GCTCC 1 cut(s) 264
LpnPI CCDG 4 cut(s) 61, 62, 85, 142
MaeII ACGT 2 cut(s) 138, 249
MalI GATC 2 cut(s) 210, 225
MboI GATC 2 cut(s) 208, 223
MboII GAAGA 2 cut(s) 17, 97
MlyI GAGTC 1 cut(s) 56
MnlI CCTC 6 cut(s) 106, 121, 125, 154, 172, 204
MroNI GCCGGC 1 cut(s) 71
MspI CCGG 2 cut(s) 49, 72
MspR9I CCNGG 2 cut(s) 49, 50
MwoI GCNNNNNNNGC 2 cut(s) 81, 129
NaeI GCCGGC 1 cut(s) 73
NciI CCSGG 2 cut(s) 49, 50
NdeII GATC 2 cut(s) 208, 223
NgoMIV GCCGGC 1 cut(s) 71
PaeR7I CTCGAG 1 cut(s) 116
PcsI WCGNNNNNNNCGW 5 cut(s) 165, 171, 174, 204, 246
PdiI GCCGGC 1 cut(s) 73
PflFI GACNNNGTC 1 cut(s) 65
PkrI GCNGC 1 cut(s) 184
PleI GAGTC 1 cut(s) 56
PpsI GAGTC 1 cut(s) 56
PspFI CCCAGC 1 cut(s) 75
PspXI VCTCGAGB 1 cut(s) 116
PsyI GACNNNGTC 1 cut(s) 65
SatI GCNGC 1 cut(s) 183
Sau3AI GATC 2 cut(s) 208, 223
SchI GAGTC 1 cut(s) 56
ScrFI CCNGG 2 cut(s) 49, 50
SetI ASST 3 cut(s) 141, 252, 261
Sfr274I CTCGAG 1 cut(s) 116
SlaI CTCGAG 1 cut(s) 116
SmaI CCCGGG 1 cut(s) 50
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
SsiI CCGC 3 cut(s) 99, 183, 190
StyD4I CCNGG 2 cut(s) 47, 48
TaaI ACNGT 1 cut(s) 91
TaiI ACGT 2 cut(s) 141, 252
TaqI TCGA 1 cut(s) 117
TaqII GACCGA 1 cut(s) 55
TauI GCSGC 1 cut(s) 185
TspGWI ACGGA 1 cut(s) 164
TspMI CCCGGG 1 cut(s) 48
Tth111I GACNNNGTC 1 cut(s) 65
XhoI CTCGAG 1 cut(s) 116
XmaI CCCGGG 1 cut(s) 48
ZraI GACGTC 1 cut(s) 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.