Rh1AG244700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0005250
Physical Location & Seq
Reverse (-)
45764916 .. 45765679
764 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG244700.1

Sequence Viewer

Length: 618 bp
ATGACGGCGACTCTGTGTCTCAAGGCCACTCCCTCTTCCATTCTCTCGCTCTCTCTCACCTCCCAAACACCACCACGTACCACCACCACCTCTCTTTCCCCAAAACCCGCATCCCCACATTCGCCACCATCACCATGTCATCATTCCCCGTCGTCGAGCACATTGTCCTCTTCAAGGTCAAAGATAACACCAATCCCTCCAGGCTCAACGGCCTCACCTCCCTCGGGCTCACCCCACCTCTCCGCTGGTCCCCTCCTCTGCACCCGATCCACCCTCTTCACCTTCAGTCACCAAGTCAACGCCGCAGTGATCTCCGAGTCGCTGCGGATCTCCATGCATGATCTGGTTTTGTTGCTAGACATCGCCATTGCAGATGTTTGGCCCTCCACCTCAGCTTTCGACTGGATATTTGTCAGCTTTATCTCCGTTGTCAGCGCCACCATCTCCTCCGCCTTCTTCTCTTCCCTCGAGCGCTTCTCCTGCGTCAACATCGCCACCACGGACGCCAACAAGGATGACAAGGCCACCCACCACCCTCTCACTCTCACCAATCTCACCCGCTCCGATCAACAGCACCACCACGCAAACGCAAACGACGTCGCTCAATTCCCCATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

205

Amino Acids

21.72

Weight (kDa)

7.18

Isoelectric Point (pI)

62.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 600
AccBSI CCGCTC 1 cut(s) 561
AciI CCGC 6 cut(s) 108, 243, 303, 325, 450, 559
AclWI GGATC 2 cut(s) 261, 335
AcuI CTGAAG 1 cut(s) 268
AcyI GRCGYC 2 cut(s) 504, 597
AfaI GTAC 1 cut(s) 79
AfeI AGCGCT 1 cut(s) 473
AfiI CCNNNNNNNGG 2 cut(s) 174, 224
AgsI TTSAA 1 cut(s) 174
AhdI GACNNNNNGTC 1 cut(s) 15
AjnI CCWGG 1 cut(s) 199
AluBI AGCT 2 cut(s) 395, 417
AluI AGCT 2 cut(s) 395, 417
Alw21I GWGCWC 1 cut(s) 161
Alw26I GTCTC 1 cut(s) 23
AlwI GGATC 2 cut(s) 261, 335
Ama87I CYCGRG 2 cut(s) 223, 467
Aor51HI AGCGCT 1 cut(s) 473
AoxI GGCC 4 cut(s) 24, 210, 380, 522
ApeKI GCWGC 1 cut(s) 322
ArsI GACNNNNNNTTYG 2 cut(s) 392, 424
AspLEI GCGC 2 cut(s) 437, 474
AspS9I GGNCC 2 cut(s) 248, 381
AsuHPI GGTGA 8 cut(s) 49, 123, 207, 222, 271, 281, 538, 547
AvaI CYCGRG 2 cut(s) 223, 467
AvaII GGWCC 1 cut(s) 248
BanII GRGCYC 1 cut(s) 230
Bbv12I GWGCWC 1 cut(s) 161
BbvCI CCTCAGC 1 cut(s) 391
BbvI GCAGC 1 cut(s) 309
BccI CCATC 2 cut(s) 136, 449
BceAI ACGGC 2 cut(s) 21, 225
BciT130I CCWGG 1 cut(s) 201
BcoDI GTCTC 1 cut(s) 23
BfaI CTAG 1 cut(s) 356
BfoI RGCGCY 2 cut(s) 438, 475
BisI GCNGC 2 cut(s) 303, 323
BlsI GCNGC 2 cut(s) 304, 324
Bme1390I CCNGG 1 cut(s) 201
Bme18I GGWCC 1 cut(s) 248
BmeRI GACNNNNNGTC 1 cut(s) 15
BmeT110I CYCGRG 2 cut(s) 223, 467
BmgT120I GGNCC 2 cut(s) 248, 381
BmiI GGNNCC 1 cut(s) 250
BmrFI CCNGG 1 cut(s) 201
BmsI GCATC 1 cut(s) 119
BplI GAGNNNNNCTC 2 cut(s) 461, 493
BpmI CTGGAG 1 cut(s) 183
Bpu10I CCTNAGC 1 cut(s) 391
BpuEI CTTGAG 1 cut(s) 5
BsaAI YACGTR 1 cut(s) 77
BsaHI GRCGYC 2 cut(s) 504, 597
BsaJI CCNNGG 2 cut(s) 222, 498
Bsc4I CCNNNNNNNGG 2 cut(s) 174, 224
Bse1I ACTGG 1 cut(s) 407
Bse3DI GCAATG 1 cut(s) 366
BseBI CCWGG 1 cut(s) 201
BseDI CCNNGG 2 cut(s) 222, 498
BseGI GGATG 2 cut(s) 110, 520
BseLI CCNNNNNNNGG 2 cut(s) 174, 224
BseMI GCAATG 1 cut(s) 366
BseMII CTCAG 1 cut(s) 405
BseNI ACTGG 1 cut(s) 407
BseRI GAGGAG 2 cut(s) 245, 436
BseXI GCAGC 1 cut(s) 309
BsgI GTGCAG 1 cut(s) 244
BshFI GGCC 4 cut(s) 26, 212, 382, 524
BsiHKAI GWGCWC 1 cut(s) 161
BsiHKCI CYCGRG 2 cut(s) 223, 467
BslFI GGGAC 1 cut(s) 234
BslI CCNNNNNNNGG 2 cut(s) 174, 224
BsmAI GTCTC 1 cut(s) 23
BsmFI GGGAC 1 cut(s) 234
BsnI GGCC 4 cut(s) 26, 212, 382, 524
BsoBI CYCGRG 2 cut(s) 223, 467
Bsp1286I GDGCHC 2 cut(s) 161, 230
Bsp143I GATC 5 cut(s) 266, 309, 327, 340, 565
BspACI CCGC 6 cut(s) 108, 243, 303, 325, 450, 559
BspANI GGCC 4 cut(s) 26, 212, 382, 524
BspCNI CTCAG 1 cut(s) 404
BspLI GGNNCC 1 cut(s) 250
BspPI GGATC 2 cut(s) 261, 335
BsrBI CCGCTC 1 cut(s) 561
BsrDI GCAATG 1 cut(s) 366
BsrI ACTGG 1 cut(s) 407
BssECI CCNNGG 2 cut(s) 222, 498
BssMI GATC 5 cut(s) 266, 309, 327, 340, 565
BssNI GRCGYC 2 cut(s) 504, 597
Bst2UI CCWGG 1 cut(s) 201
Bst6I CTCTTC 4 cut(s) 40, 175, 281, 466
BstACI GRCGYC 2 cut(s) 504, 597
BstBAI YACGTR 1 cut(s) 77
BstDEI CTNAG 1 cut(s) 391
BstDSI CCRYGG 1 cut(s) 498
BstENI CCTNNNNNAGG 1 cut(s) 172
BstF5I GGATG 2 cut(s) 110, 520
BstH2I RGCGCY 2 cut(s) 438, 475
BstHHI GCGC 2 cut(s) 437, 474
BstKTI GATC 5 cut(s) 269, 312, 330, 343, 568
BstMAI GTCTC 1 cut(s) 23
BstMBI GATC 5 cut(s) 266, 309, 327, 340, 565
BstMWI GCNNNNNNNGC 1 cut(s) 480
BstNI CCWGG 1 cut(s) 201
BstSCI CCNGG 1 cut(s) 199
BstV1I GCAGC 1 cut(s) 309
BstX2I RGATCY 1 cut(s) 327
BstYI RGATCY 1 cut(s) 327
BsuRI GGCC 4 cut(s) 26, 212, 382, 524
BtgI CCRYGG 1 cut(s) 498
BtgZI GCGATG 2 cut(s) 346, 475
BtsCI GGATG 2 cut(s) 110, 520
BtsI GCAGTG 1 cut(s) 312
BtsIMutI CAGTG 1 cut(s) 312
CfoI GCGC 2 cut(s) 437, 474
Cfr13I GGNCC 2 cut(s) 248, 381
CseI GACGC 2 cut(s) 472, 512
Csp6I GTAC 1 cut(s) 78
CviAII CATG 3 cut(s) 135, 334, 338
CviJI RGCY 8 cut(s) 26, 204, 212, 228, 382, 395, 417, 524
CviKI_1 RGCY 8 cut(s) 26, 204, 212, 228, 382, 395, 417, 524
CviQI GTAC 1 cut(s) 78
DdeI CTNAG 1 cut(s) 391
DpnI GATC 5 cut(s) 268, 311, 329, 342, 567
DpnII GATC 5 cut(s) 266, 309, 327, 340, 565
DriI GACNNNNNGTC 1 cut(s) 15
Eam1104I CTCTTC 4 cut(s) 40, 175, 281, 466
Eam1105I GACNNNNNGTC 1 cut(s) 15
EarI CTCTTC 4 cut(s) 40, 175, 281, 466
EciI GGCGGA 1 cut(s) 439
Eco24I GRGCYC 1 cut(s) 230
Eco47I GGWCC 1 cut(s) 248
Eco47III AGCGCT 1 cut(s) 473
Eco57I CTGAAG 1 cut(s) 268
Eco88I CYCGRG 2 cut(s) 223, 467
EcoNI CCTNNNNNAGG 1 cut(s) 172
EcoRII CCWGG 1 cut(s) 199
EcoT22I ATGCAT 1 cut(s) 339
EcoT38I GRGCYC 1 cut(s) 230
FaeI CATG 3 cut(s) 138, 337, 341
FaiI YATR 3 cut(s) 136, 335, 339
FaqI GGGAC 1 cut(s) 234
FatI CATG 3 cut(s) 134, 333, 337
FauI CCCGC 2 cut(s) 115, 566
Fnu4HI GCNGC 2 cut(s) 303, 323
FokI GGATG 2 cut(s) 97, 527
FriOI GRGCYC 1 cut(s) 230
Fsp4HI GCNGC 2 cut(s) 303, 323
FspBI CTAG 1 cut(s) 356
GlaI GCGC 2 cut(s) 436, 473
GluI GCNGC 2 cut(s) 303, 323
GsuI CTGGAG 1 cut(s) 183
HaeII RGCGCY 2 cut(s) 438, 475
HaeIII GGCC 4 cut(s) 26, 212, 382, 524
HgaI GACGC 2 cut(s) 472, 512
HhaI GCGC 2 cut(s) 437, 474
Hin1I GRCGYC 2 cut(s) 504, 597
Hin1II CATG 3 cut(s) 138, 337, 341
Hin6I GCGC 2 cut(s) 435, 472
HinP1I GCGC 2 cut(s) 435, 472
HincII GTYRAC 2 cut(s) 298, 487
HindII GTYRAC 2 cut(s) 298, 487
HinfI GANTC 2 cut(s) 10, 317
HphI GGTGA 8 cut(s) 49, 123, 207, 222, 271, 281, 538, 547
Hpy166II GTNNAC 2 cut(s) 298, 487
Hpy188I TCNGA 3 cut(s) 316, 565, 617
Hpy8I GTNNAC 2 cut(s) 298, 487
Hpy99I CGWCG 4 cut(s) 154, 157, 599, 602
HpyAV CCTTC 2 cut(s) 292, 463
HpyCH4IV ACGT 2 cut(s) 76, 597
HpyCH4V TGCA 3 cut(s) 261, 337, 371
HpyF10VI GCNNNNNNNGC 1 cut(s) 480
HpyF3I CTNAG 1 cut(s) 391
HpySE526I ACGT 2 cut(s) 76, 597
Hsp92I GRCGYC 2 cut(s) 504, 597
Hsp92II CATG 3 cut(s) 138, 337, 341
HspAI GCGC 2 cut(s) 435, 472
Kzo9I GATC 5 cut(s) 266, 309, 327, 340, 565
LmnI GCTCC 1 cut(s) 566
LpnPI CCDG 6 cut(s) 186, 213, 231, 329, 388, 493
Lsp1109I GCAGC 1 cut(s) 309
LweI GCATC 1 cut(s) 119
MaeI CTAG 1 cut(s) 356
MaeII ACGT 2 cut(s) 76, 597
MaeIII GTNAC 1 cut(s) 287
MalI GATC 5 cut(s) 268, 311, 329, 342, 567
MbiI CCGCTC 1 cut(s) 561
MboI GATC 5 cut(s) 266, 309, 327, 340, 565
MboII GAAGA 5 cut(s) 27, 162, 268, 448, 453
MflI RGATCY 1 cut(s) 327
MhlI GDGCHC 2 cut(s) 161, 230
MluCI AATT 1 cut(s) 605
MlyI GAGTC 2 cut(s) 4, 326
Mph1103I ATGCAT 1 cut(s) 339
MslI CAYNNNNRTG 1 cut(s) 133
MspA1I CMGCKG 1 cut(s) 245
MspR9I CCNGG 1 cut(s) 201
MvaI CCWGG 1 cut(s) 201
MwoI GCNNNNNNNGC 1 cut(s) 480
NdeII GATC 5 cut(s) 266, 309, 327, 340, 565
NlaIII CATG 3 cut(s) 138, 337, 341
NlaIV GGNNCC 1 cut(s) 250
NmuCI GTSAC 1 cut(s) 287
NsiI ATGCAT 1 cut(s) 339
PaeR7I CTCGAG 1 cut(s) 467
PcsI WCGNNNNNNNCGW 1 cut(s) 594
PkrI GCNGC 2 cut(s) 304, 324
PleI GAGTC 2 cut(s) 4, 325
PpsI GAGTC 2 cut(s) 4, 325
Ppu21I YACGTR 1 cut(s) 77
Psp6I CCWGG 1 cut(s) 199
PspGI CCWGG 1 cut(s) 199
PspN4I GGNNCC 1 cut(s) 250
PspPI GGNCC 2 cut(s) 248, 381
PspXI VCTCGAGB 1 cut(s) 467
PsuI RGATCY 1 cut(s) 327
RsaI GTAC 1 cut(s) 79
RsaNI GTAC 1 cut(s) 78
RseI CAYNNNNRTG 1 cut(s) 133
SatI GCNGC 2 cut(s) 303, 323
Sau3AI GATC 5 cut(s) 266, 309, 327, 340, 565
Sau96I GGNCC 2 cut(s) 248, 381
SchI GAGTC 2 cut(s) 4, 326
ScrFI CCNGG 1 cut(s) 201
SduI GDGCHC 2 cut(s) 161, 230
SfaNI GCATC 1 cut(s) 119
Sfr274I CTCGAG 1 cut(s) 467
SinI GGWCC 1 cut(s) 248
SlaI CTCGAG 1 cut(s) 467
SmiMI CAYNNNNRTG 1 cut(s) 133
SmlI CTYRAG 2 cut(s) 20, 467
SmoI CTYRAG 2 cut(s) 20, 467
Sse9I AATT 1 cut(s) 605
SsiI CCGC 6 cut(s) 108, 243, 303, 325, 450, 559
SspMI CTAG 1 cut(s) 356
StyD4I CCNGG 1 cut(s) 199
TaiI ACGT 2 cut(s) 79, 600
TaqI TCGA 3 cut(s) 155, 399, 468
TasI AATT 1 cut(s) 605
TauI GCSGC 1 cut(s) 305
TscAI CASTG 1 cut(s) 312
TseFI GTSAC 1 cut(s) 287
TseI GCWGC 1 cut(s) 322
Tsp45I GTSAC 1 cut(s) 287
TspGWI ACGGA 2 cut(s) 415, 515
TspRI CASTG 1 cut(s) 312
VpaK11BI GGWCC 1 cut(s) 248
XagI CCTNNNNNAGG 1 cut(s) 172
XcmI CCANNNNNNNNNTGG 2 cut(s) 242, 340
XhoI CTCGAG 1 cut(s) 467
XspI CTAG 1 cut(s) 356
ZraI GACGTC 1 cut(s) 598
Zsp2I ATGCAT 1 cut(s) 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.