Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0005250

Physical Location & Seq

Genomic Coordinates Reverse (-)

48249315 .. 48249944

Gene Structure 630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG228500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGTCATCATTCCCCGTCGTCGAGCACATTGTCCTCTTCAAGGTCAAAGATAACACCAATCCCTCCAGGCTCAACGGCCTCACCTCCCTCGGGCTCACCCCACCTCTCCGCTGGTCCCCTCCTCTGCACCCGATCCACCCTCTTCACCTTCAGTCACCAAGTCAACGCCGCAGTGATCTCCGAGTCAGCGCCACCATCTCCTCCGCCTTCTTCTCTTCCCTCGAGCGCTTCTCCTGCGTCAACATCGCCACCACGGACGCCAACAAGGATGACAAGGCCACCCACCACCCTCTCACTCTCACCAATCTCACCCGCTCCGATCAACAGCACCACCACGCAAACGCAAACGACGTCGCTCAATTCCCCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

123

Amino Acids

13.69

Weight (kDa)

9.1

Isoelectric Point (pI)

68.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005250)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10810 AT4G24026
fragaria_vesca	FvH4_5g11470
malus_domestica	MD06G1113400.v1.1 MD14G1134500.v1.1
prunus_persica	Prupe.5G126200_v2.0.a1
pyrus_communis	pycom06g10600
rosa_chinensis	RchiOBHm_Chr7g0186341
rosa_laevigata	RLG00000002143 RLG00000011413 RLG00000018050 RLG00000022479 RLG00000023922
rosa_multiflora	Rmu_sc0000645.1_g000049
rosa_roxburghii	Rroxscaffold_3G00236320 Rroxscaffold_6G00405670
rosa_rugosa	Rorug06G0473600
rosa_samantha	Rh1AG244700 Rh1BG185600 Rh1CG228500 Rh1DG011600 Rh1DG169800 Rh1DG215300 Rh2AG461800 Rh2CG448800 Rh6AG315700 Rh6BG340900 Rh6CG328700
rosa_wichuraiana	Rw7G006740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	354
AccBSI	CCGCTC	1 cut(s)	315
AciI	CCGC	4 cut(s)	109, 169, 204, 313
AclWI	GGATC	1 cut(s)	127
AcuI	CTGAAG	1 cut(s)	134
AcyI	GRCGYC	2 cut(s)	258, 351
AfeI	AGCGCT	1 cut(s)	227
AfiI	CCNNNNNNNGG	2 cut(s)	40, 90
AgsI	TTSAA	1 cut(s)	40
AjnI	CCWGG	1 cut(s)	65
Alw21I	GWGCWC	1 cut(s)	27
AlwI	GGATC	1 cut(s)	127
Ama87I	CYCGRG	2 cut(s)	89, 221
Aor51HI	AGCGCT	1 cut(s)	227
AoxI	GGCC	2 cut(s)	76, 276
AspLEI	GCGC	2 cut(s)	191, 228
AspS9I	GGNCC	1 cut(s)	114
AsuHPI	GGTGA	6 cut(s)	73, 88, 137, 147, 292, 301
AvaI	CYCGRG	2 cut(s)	89, 221
AvaII	GGWCC	1 cut(s)	114
BanII	GRGCYC	1 cut(s)	96
Bbv12I	GWGCWC	1 cut(s)	27
BccI	CCATC	1 cut(s)	203
BceAI	ACGGC	1 cut(s)	91
BciT130I	CCWGG	1 cut(s)	67
BfoI	RGCGCY	2 cut(s)	192, 229
BisI	GCNGC	1 cut(s)	169
BlsI	GCNGC	1 cut(s)	170
Bme1390I	CCNGG	1 cut(s)	67
Bme18I	GGWCC	1 cut(s)	114
BmeT110I	CYCGRG	2 cut(s)	89, 221
BmgT120I	GGNCC	1 cut(s)	114
BmiI	GGNNCC	1 cut(s)	116
BmrFI	CCNGG	1 cut(s)	67
BplI	GAGNNNNNCTC	2 cut(s)	215, 247
BpmI	CTGGAG	1 cut(s)	49
BsaHI	GRCGYC	2 cut(s)	258, 351
BsaJI	CCNNGG	2 cut(s)	88, 252
Bsc4I	CCNNNNNNNGG	2 cut(s)	40, 90
BseBI	CCWGG	1 cut(s)	67
BseDI	CCNNGG	2 cut(s)	88, 252
BseGI	GGATG	1 cut(s)	274
BseLI	CCNNNNNNNGG	2 cut(s)	40, 90
BseRI	GAGGAG	2 cut(s)	111, 190
BsgI	GTGCAG	1 cut(s)	110
BshFI	GGCC	2 cut(s)	78, 278
BsiHKAI	GWGCWC	1 cut(s)	27
BsiHKCI	CYCGRG	2 cut(s)	89, 221
BslFI	GGGAC	1 cut(s)	100
BslI	CCNNNNNNNGG	2 cut(s)	40, 90
BsmFI	GGGAC	1 cut(s)	100
BsnI	GGCC	2 cut(s)	78, 278
BsoBI	CYCGRG	2 cut(s)	89, 221
Bsp1286I	GDGCHC	2 cut(s)	27, 96
Bsp143I	GATC	3 cut(s)	132, 175, 319
BspACI	CCGC	4 cut(s)	109, 169, 204, 313
BspANI	GGCC	2 cut(s)	78, 278
BspLI	GGNNCC	1 cut(s)	116
BspPI	GGATC	1 cut(s)	127
BsrBI	CCGCTC	1 cut(s)	315
BssECI	CCNNGG	2 cut(s)	88, 252
BssMI	GATC	3 cut(s)	132, 175, 319
BssNI	GRCGYC	2 cut(s)	258, 351
Bst2UI	CCWGG	1 cut(s)	67
Bst6I	CTCTTC	3 cut(s)	41, 147, 220
BstACI	GRCGYC	2 cut(s)	258, 351
BstDSI	CCRYGG	1 cut(s)	252
BstENI	CCTNNNNNAGG	1 cut(s)	38
BstF5I	GGATG	1 cut(s)	274
BstH2I	RGCGCY	2 cut(s)	192, 229
BstHHI	GCGC	2 cut(s)	191, 228
BstKTI	GATC	3 cut(s)	135, 178, 322
BstMBI	GATC	3 cut(s)	132, 175, 319
BstMWI	GCNNNNNNNGC	1 cut(s)	234
BstNI	CCWGG	1 cut(s)	67
BstSCI	CCNGG	1 cut(s)	65
BsuRI	GGCC	2 cut(s)	78, 278
BtgI	CCRYGG	1 cut(s)	252
BtgZI	GCGATG	1 cut(s)	229
BtsCI	GGATG	1 cut(s)	274
BtsI	GCAGTG	1 cut(s)	178
BtsIMutI	CAGTG	1 cut(s)	178
CfoI	GCGC	2 cut(s)	191, 228
Cfr13I	GGNCC	1 cut(s)	114
CseI	GACGC	2 cut(s)	226, 266
CviJI	RGCY	4 cut(s)	70, 78, 94, 278
CviKI_1	RGCY	4 cut(s)	70, 78, 94, 278
DpnI	GATC	3 cut(s)	134, 177, 321
DpnII	GATC	3 cut(s)	132, 175, 319
Eam1104I	CTCTTC	3 cut(s)	41, 147, 220
EarI	CTCTTC	3 cut(s)	41, 147, 220
EciI	GGCGGA	1 cut(s)	193
Eco24I	GRGCYC	1 cut(s)	96
Eco47I	GGWCC	1 cut(s)	114
Eco47III	AGCGCT	1 cut(s)	227
Eco57I	CTGAAG	1 cut(s)	134
Eco88I	CYCGRG	2 cut(s)	89, 221
EcoNI	CCTNNNNNAGG	1 cut(s)	38
EcoRII	CCWGG	1 cut(s)	65
EcoT38I	GRGCYC	1 cut(s)	96
FaqI	GGGAC	1 cut(s)	100
FauI	CCCGC	1 cut(s)	320
Fnu4HI	GCNGC	1 cut(s)	169
FokI	GGATG	1 cut(s)	281
FriOI	GRGCYC	1 cut(s)	96
Fsp4HI	GCNGC	1 cut(s)	169
GlaI	GCGC	2 cut(s)	190, 227
GluI	GCNGC	1 cut(s)	169
GsuI	CTGGAG	1 cut(s)	49
HaeII	RGCGCY	2 cut(s)	192, 229
HaeIII	GGCC	2 cut(s)	78, 278
HgaI	GACGC	2 cut(s)	226, 266
HhaI	GCGC	2 cut(s)	191, 228
Hin1I	GRCGYC	2 cut(s)	258, 351
Hin6I	GCGC	2 cut(s)	189, 226
HinP1I	GCGC	2 cut(s)	189, 226
HincII	GTYRAC	2 cut(s)	164, 241
HindII	GTYRAC	2 cut(s)	164, 241
HinfI	GANTC	1 cut(s)	183
HphI	GGTGA	6 cut(s)	73, 88, 137, 147, 292, 301
Hpy166II	GTNNAC	2 cut(s)	164, 241
Hpy188I	TCNGA	3 cut(s)	182, 319, 371
Hpy8I	GTNNAC	2 cut(s)	164, 241
Hpy99I	CGWCG	4 cut(s)	20, 23, 353, 356
HpyAV	CCTTC	2 cut(s)	158, 217
HpyCH4IV	ACGT	1 cut(s)	351
HpyCH4V	TGCA	1 cut(s)	127
HpyF10VI	GCNNNNNNNGC	1 cut(s)	234
HpySE526I	ACGT	1 cut(s)	351
Hsp92I	GRCGYC	2 cut(s)	258, 351
HspAI	GCGC	2 cut(s)	189, 226
Kzo9I	GATC	3 cut(s)	132, 175, 319
LmnI	GCTCC	1 cut(s)	320
LpnPI	CCDG	4 cut(s)	52, 79, 97, 247
MaeII	ACGT	1 cut(s)	351
MaeIII	GTNAC	1 cut(s)	153
MalI	GATC	3 cut(s)	134, 177, 321
MbiI	CCGCTC	1 cut(s)	315
MboI	GATC	3 cut(s)	132, 175, 319
MboII	GAAGA	4 cut(s)	28, 134, 202, 207
MhlI	GDGCHC	2 cut(s)	27, 96
MluCI	AATT	1 cut(s)	359
MlyI	GAGTC	1 cut(s)	192
MspA1I	CMGCKG	1 cut(s)	111
MspR9I	CCNGG	1 cut(s)	67
MvaI	CCWGG	1 cut(s)	67
MwoI	GCNNNNNNNGC	1 cut(s)	234
NdeII	GATC	3 cut(s)	132, 175, 319
NlaIV	GGNNCC	1 cut(s)	116
NmuCI	GTSAC	1 cut(s)	153
PaeR7I	CTCGAG	1 cut(s)	221
PcsI	WCGNNNNNNNCGW	1 cut(s)	348
PkrI	GCNGC	1 cut(s)	170
PleI	GAGTC	1 cut(s)	191
PpsI	GAGTC	1 cut(s)	191
Psp6I	CCWGG	1 cut(s)	65
PspGI	CCWGG	1 cut(s)	65
PspN4I	GGNNCC	1 cut(s)	116
PspPI	GGNCC	1 cut(s)	114
PspXI	VCTCGAGB	1 cut(s)	221
SatI	GCNGC	1 cut(s)	169
Sau3AI	GATC	3 cut(s)	132, 175, 319
Sau96I	GGNCC	1 cut(s)	114
SchI	GAGTC	1 cut(s)	192
ScrFI	CCNGG	1 cut(s)	67
SduI	GDGCHC	2 cut(s)	27, 96
SetI	ASST	5 cut(s)	45, 86, 106, 150, 354
Sfr274I	CTCGAG	1 cut(s)	221
SinI	GGWCC	1 cut(s)	114
SlaI	CTCGAG	1 cut(s)	221
SmlI	CTYRAG	1 cut(s)	221
SmoI	CTYRAG	1 cut(s)	221
Sse9I	AATT	1 cut(s)	359
SsiI	CCGC	4 cut(s)	109, 169, 204, 313
StyD4I	CCNGG	1 cut(s)	65
TaiI	ACGT	1 cut(s)	354
TaqI	TCGA	2 cut(s)	21, 222
TasI	AATT	1 cut(s)	359
TauI	GCSGC	1 cut(s)	171
TscAI	CASTG	1 cut(s)	178
TseFI	GTSAC	1 cut(s)	153
Tsp45I	GTSAC	1 cut(s)	153
TspGWI	ACGGA	1 cut(s)	269
TspRI	CASTG	1 cut(s)	178
VpaK11BI	GGWCC	1 cut(s)	114
XagI	CCTNNNNNAGG	1 cut(s)	38
XcmI	CCANNNNNNNNNTGG	1 cut(s)	108
XhoI	CTCGAG	1 cut(s)	221
ZraI	GACGTC	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.