Prupe.5G126200_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0005250
Physical Location & Seq
Forward (+)
12361787 .. 12362250
464 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G126200.1

Sequence Viewer

Length: 231 bp
ATGGAAAACGGGAACAATAGTATCATATCACGGGAGAAGCTTGACCAGGTGGCCAGCTGGGTGAGCGCGACGGTCTCCACCGCCTTCTTTTCCTCCCTCGAGCGCTTCTCTTGCGTCAACCTCGCCACCACCGACTTCGACGACGAGGACGAGGACGAGGCCGCAGACCGCCCTTTCACCCTCACCAATCACAGCGACCCTCCAAACGACGTGGCTGAGCTCCCCGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

77

Amino Acids

8.38

Weight (kDa)

4.05

Isoelectric Point (pI)

26.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 68
AciI CCGC 3 cut(s) 81, 162, 169
AcoI YGGCCR 1 cut(s) 51
AfeI AGCGCT 1 cut(s) 104
AjiI CACGTC 1 cut(s) 211
AjnI CCWGG 1 cut(s) 45
AluBI AGCT 3 cut(s) 40, 57, 220
AluI AGCT 3 cut(s) 40, 57, 220
Alw21I GWGCWC 1 cut(s) 222
Alw26I GTCTC 1 cut(s) 79
Ama87I CYCGRG 1 cut(s) 98
Aor51HI AGCGCT 1 cut(s) 104
AoxI GGCC 2 cut(s) 51, 159
AspLEI GCGC 2 cut(s) 68, 105
AsuHPI GGTGA 3 cut(s) 73, 169, 175
AvaI CYCGRG 1 cut(s) 98
BaeI ACNNNNGTAYC 1 cut(s) 37
BalI TGGCCA 1 cut(s) 53
BanII GRGCYC 1 cut(s) 222
Bbv12I GWGCWC 1 cut(s) 222
BciT130I CCWGG 1 cut(s) 47
BcoDI GTCTC 1 cut(s) 79
BfoI RGCGCY 1 cut(s) 106
BisI GCNGC 1 cut(s) 162
BlpI GCTNAGC 1 cut(s) 216
BlsI GCNGC 1 cut(s) 163
Bme1390I CCNGG 1 cut(s) 47
BmeT110I CYCGRG 1 cut(s) 98
BmgBI CACGTC 1 cut(s) 211
BmrFI CCNGG 1 cut(s) 47
BplI GAGNNNNNCTC 2 cut(s) 92, 124
Bpu1102I GCTNAGC 1 cut(s) 216
BsaI GGTCTC 1 cut(s) 79
BseBI CCWGG 1 cut(s) 47
BseMII CTCAG 1 cut(s) 207
BseYI CCCAGC 1 cut(s) 57
Bsh1236I CGCG 1 cut(s) 68
BshFI GGCC 2 cut(s) 53, 161
BsiHKAI GWGCWC 1 cut(s) 222
BsiHKCI CYCGRG 1 cut(s) 98
BsmAI GTCTC 1 cut(s) 79
BsnI GGCC 2 cut(s) 53, 161
Bso31I GGTCTC 1 cut(s) 79
BsoBI CYCGRG 1 cut(s) 98
Bsp1286I GDGCHC 1 cut(s) 222
Bsp1720I GCTNAGC 1 cut(s) 216
BspACI CCGC 3 cut(s) 81, 162, 169
BspANI GGCC 2 cut(s) 53, 161
BspCNI CTCAG 1 cut(s) 208
BspFNI CGCG 1 cut(s) 68
BspTNI GGTCTC 1 cut(s) 79
Bst2UI CCWGG 1 cut(s) 47
Bst4CI ACNGT 1 cut(s) 73
BstC8I GCNNGC 1 cut(s) 55
BstDEI CTNAG 1 cut(s) 216
BstFNI CGCG 1 cut(s) 68
BstH2I RGCGCY 1 cut(s) 106
BstHHI GCGC 2 cut(s) 68, 105
BstMAI GTCTC 1 cut(s) 79
BstMWI GCNNNNNNNGC 2 cut(s) 63, 111
BstNI CCWGG 1 cut(s) 47
BstSCI CCNGG 1 cut(s) 45
BstUI CGCG 1 cut(s) 68
BsuRI GGCC 2 cut(s) 53, 161
BtrI CACGTC 1 cut(s) 211
Cac8I GCNNGC 1 cut(s) 55
CfoI GCGC 2 cut(s) 68, 105
CseI GACGC 1 cut(s) 103
CsiI ACCWGGT 1 cut(s) 45
CspCI CAANNNNNGTGG 2 cut(s) 192, 227
CviJI RGCY 6 cut(s) 40, 53, 57, 161, 215, 220
CviKI_1 RGCY 6 cut(s) 40, 53, 57, 161, 215, 220
DdeI CTNAG 1 cut(s) 216
EaeI YGGCCR 1 cut(s) 51
Ecl136II GAGCTC 1 cut(s) 220
Eco24I GRGCYC 1 cut(s) 222
Eco31I GGTCTC 1 cut(s) 79
Eco47III AGCGCT 1 cut(s) 104
Eco53kI GAGCTC 1 cut(s) 220
Eco88I CYCGRG 1 cut(s) 98
EcoICRI GAGCTC 1 cut(s) 220
EcoRII CCWGG 1 cut(s) 45
EcoT38I GRGCYC 1 cut(s) 222
FaiI YATR 1 cut(s) 26
Fnu4HI GCNGC 1 cut(s) 162
FriOI GRGCYC 1 cut(s) 222
Fsp4HI GCNGC 1 cut(s) 162
GlaI GCGC 2 cut(s) 67, 104
GluI GCNGC 1 cut(s) 162
GsaI CCCAGC 1 cut(s) 61
HaeII RGCGCY 1 cut(s) 106
HaeIII GGCC 2 cut(s) 53, 161
HgaI GACGC 1 cut(s) 103
HhaI GCGC 2 cut(s) 68, 105
Hin6I GCGC 2 cut(s) 66, 103
HinP1I GCGC 2 cut(s) 66, 103
HincII GTYRAC 1 cut(s) 118
HindII GTYRAC 1 cut(s) 118
HindIII AAGCTT 1 cut(s) 38
HphI GGTGA 3 cut(s) 73, 169, 175
Hpy166II GTNNAC 1 cut(s) 118
Hpy188I TCNGA 1 cut(s) 230
Hpy8I GTNNAC 1 cut(s) 118
Hpy99I CGWCG 4 cut(s) 73, 143, 146, 212
HpyAV CCTTC 1 cut(s) 94
HpyCH4III ACNGT 1 cut(s) 73
HpyCH4IV ACGT 1 cut(s) 210
HpyF10VI GCNNNNNNNGC 2 cut(s) 63, 111
HpyF3I CTNAG 1 cut(s) 216
HpySE526I ACGT 1 cut(s) 210
HspAI GCGC 2 cut(s) 66, 103
LmnI GCTCC 1 cut(s) 225
LpnPI CCDG 4 cut(s) 32, 43, 59, 67
MabI ACCWGGT 1 cut(s) 45
MaeII ACGT 1 cut(s) 210
MhlI GDGCHC 1 cut(s) 222
MlsI TGGCCA 1 cut(s) 53
MluNI TGGCCA 1 cut(s) 53
MnlI CCTC 8 cut(s) 103, 107, 131, 139, 145, 151, 191, 210
Mox20I TGGCCA 1 cut(s) 53
MscI TGGCCA 1 cut(s) 53
Msp20I TGGCCA 1 cut(s) 53
MspA1I CMGCKG 1 cut(s) 57
MspR9I CCNGG 1 cut(s) 47
MvaI CCWGG 1 cut(s) 47
MvnI CGCG 1 cut(s) 68
MwoI GCNNNNNNNGC 2 cut(s) 63, 111
PaeR7I CTCGAG 1 cut(s) 98
PcsI WCGNNNNNNNCGW 2 cut(s) 129, 147
PkrI GCNGC 1 cut(s) 163
Psp124BI GAGCTC 1 cut(s) 222
Psp6I CCWGG 1 cut(s) 45
PspFI CCCAGC 1 cut(s) 57
PspGI CCWGG 1 cut(s) 45
PspXI VCTCGAGB 1 cut(s) 98
PvuII CAGCTG 1 cut(s) 57
SacI GAGCTC 1 cut(s) 222
SatI GCNGC 1 cut(s) 162
ScrFI CCNGG 1 cut(s) 47
SduI GDGCHC 1 cut(s) 222
SetI ASST 6 cut(s) 42, 51, 59, 123, 213, 222
SexAI ACCWGGT 1 cut(s) 45
Sfr274I CTCGAG 1 cut(s) 98
SlaI CTCGAG 1 cut(s) 98
SmlI CTYRAG 1 cut(s) 98
SmoI CTYRAG 1 cut(s) 98
SsiI CCGC 3 cut(s) 81, 162, 169
SstI GAGCTC 1 cut(s) 222
StyD4I CCNGG 1 cut(s) 45
TaaI ACNGT 1 cut(s) 73
TaiI ACGT 1 cut(s) 213
TaqI TCGA 2 cut(s) 99, 138
TauI GCSGC 1 cut(s) 164
XhoI CTCGAG 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.