Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0005250

Physical Location & Seq

Genomic Coordinates Forward (+)

34945191 .. 34945630

Gene Structure 440 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG169800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGGTCAAGGGCCTTACCTCCCTCGGTCTCACCCCACCTATCCTCTGCACCCGATCCTCCCTCTTCGCTTTCAGTCACCGAGTCAACGCCGCAGCGATCTCCGAGTCGCTGCAGATCTCCTTGCATGATCTGGTTTTGTTCCTCTACATCGCTGCGGCTGATGTTTGGCCCTCCACCTCAGCTTTCGACGGGATATTTGACGGCTTGTCGTCGAGTACGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TBCC

Protein Analysis

74

Amino Acids

7.84

Weight (kDa)

5.29

Isoelectric Point (pI)

42.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005250)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10810 AT4G24026
fragaria_vesca	FvH4_5g11470
malus_domestica	MD06G1113400.v1.1 MD14G1134500.v1.1
prunus_persica	Prupe.5G126200_v2.0.a1
pyrus_communis	pycom06g10600
rosa_chinensis	RchiOBHm_Chr7g0186341
rosa_laevigata	RLG00000002143 RLG00000011413 RLG00000018050 RLG00000022479 RLG00000023922
rosa_multiflora	Rmu_sc0000645.1_g000049
rosa_roxburghii	Rroxscaffold_3G00236320 Rroxscaffold_6G00405670
rosa_rugosa	Rorug06G0473600
rosa_samantha	Rh1AG244700 Rh1BG185600 Rh1CG228500 Rh1DG011600 Rh1DG169800 Rh1DG215300 Rh2AG461800 Rh2CG448800 Rh6AG315700 Rh6BG340900 Rh6CG328700
rosa_wichuraiana	Rw7G006740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	90, 155
AclWI	GGATC	1 cut(s)	48
AfaI	GTAC	1 cut(s)	217
AhdI	GACNNNNNGTC	1 cut(s)	205
AluBI	AGCT	1 cut(s)	182
AluI	AGCT	1 cut(s)	182
Alw26I	GTCTC	1 cut(s)	32
AlwI	GGATC	1 cut(s)	48
AoxI	GGCC	2 cut(s)	10, 167
ApeKI	GCWGC	3 cut(s)	92, 109, 152
ArsI	GACNNNNNNTTYG	2 cut(s)	179, 211
AspS9I	GGNCC	2 cut(s)	10, 168
AsuHPI	GGTGA	2 cut(s)	22, 68
BbvCI	CCTCAGC	1 cut(s)	178
BbvI	GCAGC	3 cut(s)	96, 104, 139
BceAI	ACGGC	1 cut(s)	217
BcoDI	GTCTC	1 cut(s)	32
BfmI	CTRYAG	1 cut(s)	110
BglII	AGATCT	1 cut(s)	114
BisI	GCNGC	5 cut(s)	90, 93, 110, 153, 156
BlsI	GCNGC	5 cut(s)	91, 94, 111, 154, 157
BmeRI	GACNNNNNGTC	1 cut(s)	205
BmgT120I	GGNCC	2 cut(s)	10, 168
Bpu10I	CCTNAGC	1 cut(s)	178
BsaI	GGTCTC	1 cut(s)	32
BsaJI	CCNNGG	1 cut(s)	22
BseDI	CCNNGG	1 cut(s)	22
BseMII	CTCAG	1 cut(s)	192
BseXI	GCAGC	3 cut(s)	96, 104, 139
BsgI	GTGCAG	1 cut(s)	31
BshFI	GGCC	2 cut(s)	12, 169
BsmAI	GTCTC	1 cut(s)	32
BsnI	GGCC	2 cut(s)	12, 169
Bso31I	GGTCTC	1 cut(s)	32
Bsp143I	GATC	4 cut(s)	53, 96, 114, 127
BspACI	CCGC	2 cut(s)	90, 155
BspANI	GGCC	2 cut(s)	12, 169
BspCNI	CTCAG	1 cut(s)	191
BspMAI	CTGCAG	1 cut(s)	114
BspPI	GGATC	1 cut(s)	48
BspTNI	GGTCTC	1 cut(s)	32
BssECI	CCNNGG	1 cut(s)	22
BssMI	GATC	4 cut(s)	53, 96, 114, 127
Bst6I	CTCTTC	1 cut(s)	68
BstDEI	CTNAG	1 cut(s)	178
BstKTI	GATC	4 cut(s)	56, 99, 117, 130
BstMAI	GTCTC	1 cut(s)	32
BstMBI	GATC	4 cut(s)	53, 96, 114, 127
BstSFI	CTRYAG	1 cut(s)	110
BstV1I	GCAGC	3 cut(s)	96, 104, 139
BstX2I	RGATCY	1 cut(s)	114
BstYI	RGATCY	1 cut(s)	114
BsuRI	GGCC	2 cut(s)	12, 169
BtgZI	GCGATG	1 cut(s)	133
Cfr13I	GGNCC	2 cut(s)	10, 168
Csp6I	GTAC	1 cut(s)	216
CviAII	CATG	1 cut(s)	125
CviJI	RGCY	5 cut(s)	12, 158, 169, 182, 204
CviKI_1	RGCY	5 cut(s)	12, 158, 169, 182, 204
CviQI	GTAC	1 cut(s)	216
DdeI	CTNAG	1 cut(s)	178
DpnI	GATC	4 cut(s)	55, 98, 116, 129
DpnII	GATC	4 cut(s)	53, 96, 114, 127
DriI	GACNNNNNGTC	1 cut(s)	205
Eam1104I	CTCTTC	1 cut(s)	68
Eam1105I	GACNNNNNGTC	1 cut(s)	205
EarI	CTCTTC	1 cut(s)	68
Eco31I	GGTCTC	1 cut(s)	32
EcoO109I	RGGNCCY	1 cut(s)	10
FaeI	CATG	1 cut(s)	128
FaiI	YATR	1 cut(s)	126
FatI	CATG	1 cut(s)	124
Fnu4HI	GCNGC	5 cut(s)	90, 93, 110, 153, 156
Fsp4HI	GCNGC	5 cut(s)	90, 93, 110, 153, 156
GluI	GCNGC	5 cut(s)	90, 93, 110, 153, 156
HaeIII	GGCC	2 cut(s)	12, 169
Hin1II	CATG	1 cut(s)	128
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HinfI	GANTC	2 cut(s)	81, 104
HphI	GGTGA	2 cut(s)	22, 68
Hpy166II	GTNNAC	1 cut(s)	85
Hpy188I	TCNGA	1 cut(s)	103
Hpy8I	GTNNAC	1 cut(s)	85
Hpy99I	CGWCG	2 cut(s)	191, 214
HpyCH4V	TGCA	3 cut(s)	48, 112, 124
HpyF3I	CTNAG	1 cut(s)	178
Hsp92II	CATG	1 cut(s)	128
Kzo9I	GATC	4 cut(s)	53, 96, 114, 127
LpnPI	CCDG	1 cut(s)	116
Lsp1109I	GCAGC	3 cut(s)	96, 104, 139
MaeIII	GTNAC	1 cut(s)	74
MalI	GATC	4 cut(s)	55, 98, 116, 129
MboI	GATC	4 cut(s)	53, 96, 114, 127
MboII	GAAGA	1 cut(s)	55
MflI	RGATCY	1 cut(s)	114
MluCI	AATT	1 cut(s)	220
MlyI	GAGTC	2 cut(s)	90, 113
MnlI	CCTC	8 cut(s)	28, 32, 53, 67, 71, 152, 181, 187
NdeII	GATC	4 cut(s)	53, 96, 114, 127
NlaIII	CATG	1 cut(s)	128
NmuCI	GTSAC	1 cut(s)	74
PcsI	WCGNNNNNNNCGW	1 cut(s)	215
PkrI	GCNGC	5 cut(s)	91, 94, 111, 154, 157
PleI	GAGTC	2 cut(s)	89, 112
PpsI	GAGTC	2 cut(s)	89, 112
PspPI	GGNCC	2 cut(s)	10, 168
PstI	CTGCAG	1 cut(s)	114
PsuI	RGATCY	1 cut(s)	114
RsaI	GTAC	1 cut(s)	217
RsaNI	GTAC	1 cut(s)	216
SatI	GCNGC	5 cut(s)	90, 93, 110, 153, 156
Sau3AI	GATC	4 cut(s)	53, 96, 114, 127
Sau96I	GGNCC	2 cut(s)	10, 168
SchI	GAGTC	2 cut(s)	90, 113
SetI	ASST	4 cut(s)	20, 40, 179, 184
SfcI	CTRYAG	1 cut(s)	110
Sse9I	AATT	1 cut(s)	220
SsiI	CCGC	2 cut(s)	90, 155
TaqI	TCGA	2 cut(s)	186, 212
TaqII	GACCGA	1 cut(s)	14
TasI	AATT	1 cut(s)	220
TauI	GCSGC	2 cut(s)	92, 158
TseFI	GTSAC	1 cut(s)	74
TseI	GCWGC	3 cut(s)	92, 109, 152
Tsp45I	GTSAC	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.