Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0005250

Physical Location & Seq

Genomic Coordinates Forward (+)

1236813 .. 1237675

Gene Structure 863 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022479

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGACGGCAACTTTGTGTCTCAAGGCCACTACCTCTTCCATTCTCTCACTCTCTCTCACCTCCCAAACACCACCACCACCACCTCTCTTTCCCCAAAACCCGCATCCCCACATTCGCCACCATCACCATGTTGTCATTCCCCGTCGTCGAGCACATCGTCCTCTTCAAGGTCAAAGACAACACCAATCCCTCCAAGGTCAACAGCCTCACCTCCCTCGGTCTCACCCCACCTCTCCGCCGGTCCCCTCCTCTGCACCCGATCCACCCTCTTCACCTTCAGTCACCAAGTCGTTGCGGATCTCCATGCATGATATGGTTTTGTCCCTCTACATTGCCGTTGCGGATGTTTGGCCTTCCACCTCAACTTTTGACTGGATATTTGTCGGCTTTGTAGCCGTTGCAGATAGGTCAGTGCCACCGTCTCCTCCGCCTTCTTCTCTTCCCTCGAGCGCTTTTCCTTCGTCAACGTCGCCACCACAGACGCCAACGAGGACGACGATGATGACGAGGCCGCCCACCGCCTCTCGCTCTCACCAATCTCACCCGCTTGGATCAACAGCACCACCACGAAAACGCAAACGACGTCGCTCAGTTCCTCTTCTGATTGGGTTAGATCTCAGCTTCTTTTTTTTTGGAACTGGATTTGCCAAAAAAAGGGTTCTGGTTGTGAATTTCGCTATGCGTGAATATGGAATTGTATATGAATTGTTGAATTATCAAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

242

Amino Acids

26.64

Weight (kDa)

11.58

Isoelectric Point (pI)

80.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005250)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10810 AT4G24026
fragaria_vesca	FvH4_5g11470
malus_domestica	MD06G1113400.v1.1 MD14G1134500.v1.1
prunus_persica	Prupe.5G126200_v2.0.a1
pyrus_communis	pycom06g10600
rosa_chinensis	RchiOBHm_Chr7g0186341
rosa_laevigata	RLG00000002143 RLG00000011413 RLG00000018050 RLG00000022479 RLG00000023922
rosa_multiflora	Rmu_sc0000645.1_g000049
rosa_roxburghii	Rroxscaffold_3G00236320 Rroxscaffold_6G00405670
rosa_rugosa	Rorug06G0473600
rosa_samantha	Rh1AG244700 Rh1BG185600 Rh1CG228500 Rh1DG011600 Rh1DG169800 Rh1DG215300 Rh2AG461800 Rh2CG448800 Rh6AG315700 Rh6BG340900 Rh6CG328700
rosa_wichuraiana	Rw7G006740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	586
AciI	CCGC	8 cut(s)	101, 236, 295, 341, 428, 512, 519, 545
AclWI	GGATC	3 cut(s)	254, 305, 559
AcsI	RAATTY	1 cut(s)	670
AcuI	CTGAAG	1 cut(s)	261
AcyI	GRCGYC	2 cut(s)	482, 583
AfeI	AGCGCT	1 cut(s)	451
AfiI	CCNNNNNNNGG	2 cut(s)	167, 654
AgsI	TTSAA	2 cut(s)	167, 712
AluBI	AGCT	1 cut(s)	621
AluI	AGCT	1 cut(s)	621
Alw21I	GWGCWC	1 cut(s)	154
Alw26I	GTCTC	3 cut(s)	23, 225, 426
AlwI	GGATC	3 cut(s)	254, 305, 559
Ama87I	CYCGRG	1 cut(s)	445
Aor51HI	AGCGCT	1 cut(s)	451
AoxI	GGCC	3 cut(s)	24, 350, 509
ApoI	RAATTY	1 cut(s)	670
ArsI	GACNNNNNNTTYG	3 cut(s)	27, 362, 394
AspLEI	GCGC	1 cut(s)	452
AspS9I	GGNCC	1 cut(s)	241
AsuHPI	GGTGA	8 cut(s)	49, 116, 200, 215, 264, 274, 524, 533
AvaI	CYCGRG	1 cut(s)	445
AvaII	GGWCC	1 cut(s)	241
Bbv12I	GWGCWC	1 cut(s)	154
BccI	CCATC	1 cut(s)	129
BceAI	ACGGC	3 cut(s)	21, 320, 380
BcoDI	GTCTC	3 cut(s)	23, 225, 426
BfoI	RGCGCY	1 cut(s)	453
BglII	AGATCT	1 cut(s)	613
BisI	GCNGC	1 cut(s)	512
BlsI	GCNGC	1 cut(s)	513
Bme18I	GGWCC	1 cut(s)	241
BmeT110I	CYCGRG	1 cut(s)	445
BmgT120I	GGNCC	1 cut(s)	241
BmiI	GGNNCC	1 cut(s)	243
BmsI	GCATC	1 cut(s)	112
BpuEI	CTTGAG	1 cut(s)	5
BsaHI	GRCGYC	2 cut(s)	482, 583
BsaI	GGTCTC	1 cut(s)	225
BsaJI	CCNNGG	2 cut(s)	193, 215
Bsc4I	CCNNNNNNNGG	2 cut(s)	167, 654
Bse118I	RCCGGY	1 cut(s)	238
Bse1I	ACTGG	2 cut(s)	377, 643
Bse3DI	GCAATG	1 cut(s)	330
BseDI	CCNNGG	2 cut(s)	193, 215
BseGI	GGATG	2 cut(s)	103, 349
BseLI	CCNNNNNNNGG	2 cut(s)	167, 654
BseMI	GCAATG	1 cut(s)	330
BseMII	CTCAG	2 cut(s)	603, 631
BseNI	ACTGG	2 cut(s)	377, 643
BseRI	GAGGAG	2 cut(s)	238, 414
BsgI	GTGCAG	1 cut(s)	237
BshFI	GGCC	3 cut(s)	26, 352, 511
BsiHKAI	GWGCWC	1 cut(s)	154
BsiHKCI	CYCGRG	1 cut(s)	445
BsiSI	CCGG	1 cut(s)	239
BslFI	GGGAC	2 cut(s)	227, 307
BslI	CCNNNNNNNGG	2 cut(s)	167, 654
BsmAI	GTCTC	3 cut(s)	23, 225, 426
BsmBI	CGTCTC	1 cut(s)	426
BsmFI	GGGAC	2 cut(s)	227, 307
BsnI	GGCC	3 cut(s)	26, 352, 511
Bso31I	GGTCTC	1 cut(s)	225
BsoBI	CYCGRG	1 cut(s)	445
Bsp1286I	GDGCHC	1 cut(s)	154
Bsp143I	GATC	4 cut(s)	259, 297, 551, 613
BspACI	CCGC	8 cut(s)	101, 236, 295, 341, 428, 512, 519, 545
BspANI	GGCC	3 cut(s)	26, 352, 511
BspCNI	CTCAG	2 cut(s)	602, 630
BspLI	GGNNCC	1 cut(s)	243
BspPI	GGATC	3 cut(s)	254, 305, 559
BspTNI	GGTCTC	1 cut(s)	225
BsrDI	GCAATG	1 cut(s)	330
BsrFI	RCCGGY	1 cut(s)	238
BsrI	ACTGG	2 cut(s)	377, 643
BssAI	RCCGGY	1 cut(s)	238
BssECI	CCNNGG	2 cut(s)	193, 215
BssMI	GATC	4 cut(s)	259, 297, 551, 613
BssNI	GRCGYC	2 cut(s)	482, 583
BssT1I	CCWWGG	1 cut(s)	193
Bst4CI	ACNGT	1 cut(s)	420
Bst6I	CTCTTC	5 cut(s)	40, 168, 274, 444, 603
BstACI	GRCGYC	2 cut(s)	482, 583
BstDEI	CTNAG	2 cut(s)	589, 617
BstENI	CCTNNNNNAGG	1 cut(s)	165
BstF5I	GGATG	2 cut(s)	103, 349
BstH2I	RGCGCY	1 cut(s)	453
BstHHI	GCGC	1 cut(s)	452
BstKTI	GATC	4 cut(s)	262, 300, 554, 616
BstMAI	GTCTC	3 cut(s)	23, 225, 426
BstMBI	GATC	4 cut(s)	259, 297, 551, 613
BstX2I	RGATCY	2 cut(s)	297, 613
BstYI	RGATCY	2 cut(s)	297, 613
BsuRI	GGCC	3 cut(s)	26, 352, 511
BtsCI	GGATG	2 cut(s)	103, 349
BtsIMutI	CAGTG	1 cut(s)	417
CfoI	GCGC	1 cut(s)	452
Cfr10I	RCCGGY	1 cut(s)	238
Cfr13I	GGNCC	1 cut(s)	241
CseI	GACGC	1 cut(s)	490
CviAII	CATG	3 cut(s)	128, 304, 308
CviJI	RGCY	7 cut(s)	26, 205, 352, 387, 395, 511, 621
CviKI_1	RGCY	7 cut(s)	26, 205, 352, 387, 395, 511, 621
DdeI	CTNAG	2 cut(s)	589, 617
DpnI	GATC	4 cut(s)	261, 299, 553, 615
DpnII	GATC	4 cut(s)	259, 297, 551, 613
Eam1104I	CTCTTC	5 cut(s)	40, 168, 274, 444, 603
EarI	CTCTTC	5 cut(s)	40, 168, 274, 444, 603
EciI	GGCGGA	2 cut(s)	225, 417
Eco130I	CCWWGG	1 cut(s)	193
Eco31I	GGTCTC	1 cut(s)	225
Eco47I	GGWCC	1 cut(s)	241
Eco47III	AGCGCT	1 cut(s)	451
Eco57I	CTGAAG	1 cut(s)	261
Eco88I	CYCGRG	1 cut(s)	445
EcoNI	CCTNNNNNAGG	1 cut(s)	165
EcoT14I	CCWWGG	1 cut(s)	193
EcoT22I	ATGCAT	1 cut(s)	309
ErhI	CCWWGG	1 cut(s)	193
Esp3I	CGTCTC	1 cut(s)	426
FaeI	CATG	3 cut(s)	131, 307, 311
FaiI	YATR	8 cut(s)	129, 305, 309, 314, 680, 690, 700, 702
FaqI	GGGAC	2 cut(s)	227, 307
FatI	CATG	3 cut(s)	127, 303, 307
FauI	CCCGC	2 cut(s)	108, 552
Fnu4HI	GCNGC	1 cut(s)	512
FokI	GGATG	2 cut(s)	90, 356
Fsp4HI	GCNGC	1 cut(s)	512
GlaI	GCGC	1 cut(s)	451
GluI	GCNGC	1 cut(s)	512
HaeII	RGCGCY	1 cut(s)	453
HaeIII	GGCC	3 cut(s)	26, 352, 511
HapII	CCGG	1 cut(s)	239
HgaI	GACGC	1 cut(s)	490
HhaI	GCGC	1 cut(s)	452
Hin1I	GRCGYC	2 cut(s)	482, 583
Hin1II	CATG	3 cut(s)	131, 307, 311
Hin6I	GCGC	1 cut(s)	450
HinP1I	GCGC	1 cut(s)	450
HincII	GTYRAC	2 cut(s)	200, 465
HindII	GTYRAC	2 cut(s)	200, 465
HpaII	CCGG	1 cut(s)	239
HphI	GGTGA	8 cut(s)	49, 116, 200, 215, 264, 274, 524, 533
Hpy166II	GTNNAC	2 cut(s)	200, 465
Hpy188I	TCNGA	1 cut(s)	603
Hpy8I	GTNNAC	2 cut(s)	200, 465
Hpy99I	CGWCG	6 cut(s)	147, 150, 472, 499, 585, 588
HpyAV	CCTTC	4 cut(s)	285, 363, 441, 468
HpyCH4III	ACNGT	1 cut(s)	420
HpyCH4IV	ACGT	2 cut(s)	467, 583
HpyCH4V	TGCA	3 cut(s)	254, 307, 401
HpyF3I	CTNAG	2 cut(s)	589, 617
HpySE526I	ACGT	2 cut(s)	467, 583
Hsp92I	GRCGYC	2 cut(s)	482, 583
Hsp92II	CATG	3 cut(s)	131, 307, 311
HspAI	GCGC	1 cut(s)	450
Kzo9I	GATC	4 cut(s)	259, 297, 551, 613
LpnPI	CCDG	4 cut(s)	252, 358, 624, 647
LweI	GCATC	1 cut(s)	112
MaeII	ACGT	2 cut(s)	467, 583
MaeIII	GTNAC	1 cut(s)	280
MalI	GATC	4 cut(s)	261, 299, 553, 615
MboI	GATC	4 cut(s)	259, 297, 551, 613
MboII	GAAGA	6 cut(s)	27, 155, 261, 426, 431, 590
MflI	RGATCY	2 cut(s)	297, 613
MhlI	GDGCHC	1 cut(s)	154
MluCI	AATT	4 cut(s)	670, 693, 704, 712
Mph1103I	ATGCAT	1 cut(s)	309
MslI	CAYNNNNRTG	1 cut(s)	126
MspI	CCGG	1 cut(s)	239
NdeII	GATC	4 cut(s)	259, 297, 551, 613
NlaIII	CATG	3 cut(s)	131, 307, 311
NlaIV	GGNNCC	1 cut(s)	243
NmuCI	GTSAC	1 cut(s)	280
NsiI	ATGCAT	1 cut(s)	309
PaeR7I	CTCGAG	1 cut(s)	445
PcsI	WCGNNNNNNNCGW	4 cut(s)	154, 494, 503, 580
PkrI	GCNGC	1 cut(s)	513
PspN4I	GGNNCC	1 cut(s)	243
PspPI	GGNCC	1 cut(s)	241
PspXI	VCTCGAGB	1 cut(s)	445
PsuI	RGATCY	2 cut(s)	297, 613
RseI	CAYNNNNRTG	1 cut(s)	126
SatI	GCNGC	1 cut(s)	512
Sau3AI	GATC	4 cut(s)	259, 297, 551, 613
Sau96I	GGNCC	1 cut(s)	241
SduI	GDGCHC	1 cut(s)	154
SfaNI	GCATC	1 cut(s)	112
Sfr274I	CTCGAG	1 cut(s)	445
SinI	GGWCC	1 cut(s)	241
SlaI	CTCGAG	1 cut(s)	445
SmiMI	CAYNNNNRTG	1 cut(s)	126
SmlI	CTYRAG	2 cut(s)	20, 445
SmoI	CTYRAG	2 cut(s)	20, 445
Sse9I	AATT	4 cut(s)	670, 693, 704, 712
SsiI	CCGC	8 cut(s)	101, 236, 295, 341, 428, 512, 519, 545
StyI	CCWWGG	1 cut(s)	193
TaaI	ACNGT	1 cut(s)	420
TaiI	ACGT	2 cut(s)	470, 586
TaqI	TCGA	2 cut(s)	148, 446
TaqII	GACCGA	1 cut(s)	207
TasI	AATT	4 cut(s)	670, 693, 704, 712
TauI	GCSGC	1 cut(s)	514
TscAI	CASTG	1 cut(s)	417
TseFI	GTSAC	1 cut(s)	280
Tsp45I	GTSAC	1 cut(s)	280
TspDTI	ATGAA	1 cut(s)	717
TspRI	CASTG	1 cut(s)	417
VpaK11BI	GGWCC	1 cut(s)	241
XagI	CCTNNNNNAGG	1 cut(s)	165
XapI	RAATTY	1 cut(s)	670
XcmI	CCANNNNNNNNNTGG	1 cut(s)	310
XhoI	CTCGAG	1 cut(s)	445
ZraI	GACGTC	1 cut(s)	584
Zsp2I	ATGCAT	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.