Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0005250

Physical Location & Seq

Genomic Coordinates Reverse (-)

26166451 .. 26166975

Gene Structure 525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002143

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGTCGTCATTCCCCATTGTCGAGCACATCGTCTTCTTCAAGATCAAAGACAACACCAATCCCTCCAAGGTCAACGACCTCACCTCCCTCGATCTCACCCCACCTCTACACCCGATCCACCCTCTTCACCTTCAGTCACCTAGTCGTTGCGGATCTCCATGCATGATCTGGTTTTGTCCCTCTACATCACCGTTGCGAATGTTTGGCCCTCCACCTCAGCTTTCGACTAGATATTTGTCAGCTTTGTCGCCGTTACAGGTCAGCGCCACCATCTCCTCCGCCTTCTTCTCTTCCCTCGAGCGCTTTTCCTGCGTCAACGTCGCCACCACGGACGCTGACGAGGACGATGAGGTCGCCCACCGCCTCTCGCTCTCACCAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

128

Amino Acids

13.98

Weight (kDa)

5.87

Isoelectric Point (pI)

60.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005250)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10810 AT4G24026
fragaria_vesca	FvH4_5g11470
malus_domestica	MD06G1113400.v1.1 MD14G1134500.v1.1
prunus_persica	Prupe.5G126200_v2.0.a1
pyrus_communis	pycom06g10600
rosa_chinensis	RchiOBHm_Chr7g0186341
rosa_laevigata	RLG00000002143 RLG00000011413 RLG00000018050 RLG00000022479 RLG00000023922
rosa_multiflora	Rmu_sc0000645.1_g000049
rosa_roxburghii	Rroxscaffold_3G00236320 Rroxscaffold_6G00405670
rosa_rugosa	Rorug06G0473600
rosa_samantha	Rh1AG244700 Rh1BG185600 Rh1CG228500 Rh1DG011600 Rh1DG169800 Rh1DG215300 Rh2AG461800 Rh2CG448800 Rh6AG315700 Rh6BG340900 Rh6CG328700
rosa_wichuraiana	Rw7G006740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	350
AciI	CCGC	3 cut(s)	150, 279, 361
AclWI	GGATC	2 cut(s)	109, 160
AcuI	CTGAAG	1 cut(s)	116
AfeI	AGCGCT	1 cut(s)	302
AgsI	TTSAA	1 cut(s)	40
AluBI	AGCT	2 cut(s)	220, 242
AluI	AGCT	2 cut(s)	220, 242
Alw21I	GWGCWC	1 cut(s)	27
AlwI	GGATC	2 cut(s)	109, 160
Ama87I	CYCGRG	1 cut(s)	296
Aor51HI	AGCGCT	1 cut(s)	302
AoxI	GGCC	1 cut(s)	205
ArsI	GACNNNNNNTTYG	2 cut(s)	217, 249
AspLEI	GCGC	2 cut(s)	266, 303
AspS9I	GGNCC	1 cut(s)	206
AsuHPI	GGTGA	6 cut(s)	73, 88, 119, 129, 180, 366
AvaI	CYCGRG	1 cut(s)	296
BbsI	GAAGAC	1 cut(s)	25
Bbv12I	GWGCWC	1 cut(s)	27
BbvCI	CCTCAGC	1 cut(s)	216
BccI	CCATC	1 cut(s)	278
BceAI	ACGGC	1 cut(s)	235
BfaI	CTAG	2 cut(s)	141, 228
BfoI	RGCGCY	2 cut(s)	267, 304
BmeT110I	CYCGRG	1 cut(s)	296
BmgT120I	GGNCC	1 cut(s)	206
BpiI	GAAGAC	1 cut(s)	25
Bpu10I	CCTNAGC	1 cut(s)	216
BsaJI	CCNNGG	2 cut(s)	66, 327
BsaXI	ACNNNNNCTCC	2 cut(s)	68, 98
BseDI	CCNNGG	2 cut(s)	66, 327
BseMII	CTCAG	1 cut(s)	230
BseRI	GAGGAG	1 cut(s)	265
BshFI	GGCC	1 cut(s)	207
BsiHKAI	GWGCWC	1 cut(s)	27
BsiHKCI	CYCGRG	1 cut(s)	296
BslFI	GGGAC	1 cut(s)	162
BsmFI	GGGAC	1 cut(s)	162
BsnI	GGCC	1 cut(s)	207
BsoBI	CYCGRG	1 cut(s)	296
Bsp1286I	GDGCHC	1 cut(s)	27
Bsp143I	GATC	5 cut(s)	42, 91, 114, 152, 165
BspACI	CCGC	3 cut(s)	150, 279, 361
BspANI	GGCC	1 cut(s)	207
BspCNI	CTCAG	1 cut(s)	229
BspPI	GGATC	2 cut(s)	109, 160
BssECI	CCNNGG	2 cut(s)	66, 327
BssMI	GATC	5 cut(s)	42, 91, 114, 152, 165
BssT1I	CCWWGG	1 cut(s)	66
Bst4CI	ACNGT	1 cut(s)	192
Bst6I	CTCTTC	2 cut(s)	129, 295
BstDEI	CTNAG	1 cut(s)	216
BstDSI	CCRYGG	1 cut(s)	327
BstH2I	RGCGCY	2 cut(s)	267, 304
BstHHI	GCGC	2 cut(s)	266, 303
BstKTI	GATC	5 cut(s)	45, 94, 117, 155, 168
BstMBI	GATC	5 cut(s)	42, 91, 114, 152, 165
BstMWI	GCNNNNNNNGC	1 cut(s)	309
BstV2I	GAAGAC	1 cut(s)	25
BstX2I	RGATCY	1 cut(s)	152
BstYI	RGATCY	1 cut(s)	152
BsuRI	GGCC	1 cut(s)	207
BtgI	CCRYGG	1 cut(s)	327
CfoI	GCGC	2 cut(s)	266, 303
Cfr13I	GGNCC	1 cut(s)	206
CseI	GACGC	2 cut(s)	301, 341
CviAII	CATG	2 cut(s)	159, 163
CviJI	RGCY	3 cut(s)	207, 220, 242
CviKI_1	RGCY	3 cut(s)	207, 220, 242
DdeI	CTNAG	1 cut(s)	216
DpnI	GATC	5 cut(s)	44, 93, 116, 154, 167
DpnII	GATC	5 cut(s)	42, 91, 114, 152, 165
DrdI	GACNNNNNNGTC	1 cut(s)	350
DseDI	GACNNNNNNGTC	1 cut(s)	350
Eam1104I	CTCTTC	2 cut(s)	129, 295
EarI	CTCTTC	2 cut(s)	129, 295
EciI	GGCGGA	1 cut(s)	268
Eco130I	CCWWGG	1 cut(s)	66
Eco47III	AGCGCT	1 cut(s)	302
Eco57I	CTGAAG	1 cut(s)	116
Eco88I	CYCGRG	1 cut(s)	296
EcoT14I	CCWWGG	1 cut(s)	66
EcoT22I	ATGCAT	1 cut(s)	164
ErhI	CCWWGG	1 cut(s)	66
FaeI	CATG	2 cut(s)	162, 166
FaiI	YATR	2 cut(s)	160, 164
FaqI	GGGAC	1 cut(s)	162
FatI	CATG	2 cut(s)	158, 162
FspBI	CTAG	2 cut(s)	141, 228
GlaI	GCGC	2 cut(s)	265, 302
HaeII	RGCGCY	2 cut(s)	267, 304
HaeIII	GGCC	1 cut(s)	207
HgaI	GACGC	2 cut(s)	301, 341
HhaI	GCGC	2 cut(s)	266, 303
Hin1II	CATG	2 cut(s)	162, 166
Hin6I	GCGC	2 cut(s)	264, 301
HinP1I	GCGC	2 cut(s)	264, 301
HincII	GTYRAC	2 cut(s)	73, 316
HindII	GTYRAC	2 cut(s)	73, 316
HphI	GGTGA	6 cut(s)	73, 88, 119, 129, 180, 366
Hpy166II	GTNNAC	2 cut(s)	73, 316
Hpy188III	TCNNGA	1 cut(s)	40
Hpy8I	GTNNAC	2 cut(s)	73, 316
Hpy99I	CGWCG	1 cut(s)	323
HpyAV	CCTTC	2 cut(s)	140, 292
HpyCH4III	ACNGT	1 cut(s)	192
HpyCH4IV	ACGT	1 cut(s)	318
HpyCH4V	TGCA	1 cut(s)	162
HpyF10VI	GCNNNNNNNGC	1 cut(s)	309
HpyF3I	CTNAG	1 cut(s)	216
HpySE526I	ACGT	1 cut(s)	318
Hsp92II	CATG	2 cut(s)	162, 166
HspAI	GCGC	2 cut(s)	264, 301
Kzo9I	GATC	5 cut(s)	42, 91, 114, 152, 165
LpnPI	CCDG	3 cut(s)	154, 242, 322
MaeI	CTAG	2 cut(s)	141, 228
MaeII	ACGT	1 cut(s)	318
MaeIII	GTNAC	2 cut(s)	135, 252
MalI	GATC	5 cut(s)	44, 93, 116, 154, 167
MboI	GATC	5 cut(s)	42, 91, 114, 152, 165
MboII	GAAGA	5 cut(s)	25, 28, 116, 277, 282
MflI	RGATCY	1 cut(s)	152
MhlI	GDGCHC	1 cut(s)	27
Mph1103I	ATGCAT	1 cut(s)	164
MwoI	GCNNNNNNNGC	1 cut(s)	309
NdeII	GATC	5 cut(s)	42, 91, 114, 152, 165
NlaIII	CATG	2 cut(s)	162, 166
NmuCI	GTSAC	1 cut(s)	135
NsiI	ATGCAT	1 cut(s)	164
PaeR7I	CTCGAG	1 cut(s)	296
PcsI	WCGNNNNNNNCGW	1 cut(s)	27
PspPI	GGNCC	1 cut(s)	206
PspXI	VCTCGAGB	1 cut(s)	296
PsuI	RGATCY	1 cut(s)	152
Sau3AI	GATC	5 cut(s)	42, 91, 114, 152, 165
Sau96I	GGNCC	1 cut(s)	206
SduI	GDGCHC	1 cut(s)	27
Sfr274I	CTCGAG	1 cut(s)	296
SlaI	CTCGAG	1 cut(s)	296
SmlI	CTYRAG	1 cut(s)	296
SmoI	CTYRAG	1 cut(s)	296
SsiI	CCGC	3 cut(s)	150, 279, 361
SspMI	CTAG	2 cut(s)	141, 228
StyI	CCWWGG	1 cut(s)	66
TaaI	ACNGT	1 cut(s)	192
TaiI	ACGT	1 cut(s)	321
TaqI	TCGA	4 cut(s)	21, 90, 224, 297
TseFI	GTSAC	1 cut(s)	135
Tsp45I	GTSAC	1 cut(s)	135
TspGWI	ACGGA	1 cut(s)	344
XcmI	CCANNNNNNNNNTGG	1 cut(s)	165
XhoI	CTCGAG	1 cut(s)	296
XspI	CTAG	2 cut(s)	141, 228
Zsp2I	ATGCAT	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.