RLG00000011413

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0005250
Physical Location & Seq
Forward (+)
9208820 .. 9209395
576 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011413

Sequence Viewer

Length: 438 bp
ATGTCGTCATTCCCCGTCGTCAAGCACATCGTCCTCTTCAAGGTCAAAGACAACACCAATCCCTCCAAGGTCAATGGCCTCACCTCCCTCGGTCTCACCTCTCCGCCGGTCCCCTCCTCTGCGCCCGATCCACCCTCTTCACCTTCAGTCACCGAGTCATTGCGGATCTGCGGATCTCTATGCATGATTTGGTTTTGTCCCTCTACATGGCAGTTGCGGATGTTTAGCCCTCCACCTCAGCTTTCGGCTGGATATTTGTCGGCTTTGCAAATTGAAGATAGGCTAGCGCCACCGTCTCCTCCGCCTTCTTCTCTTCCCTCGAGCGCTTCTCCTGCATCAACATCGCCACCATGGACGCCTACGAGGACGACCACCGCCTATCGCTCTCACCAATCTCACCCGTTTCGATCAACAGCACCACCACGCAAACGCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

146

Amino Acids

15.62

Weight (kDa)

10.23

Isoelectric Point (pI)

92.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 104, 163, 171, 217, 302, 375
AclWI GGATC 3 cut(s) 122, 173, 181
AcuI CTGAAG 1 cut(s) 129
AcyI GRCGYC 1 cut(s) 356
AfeI AGCGCT 1 cut(s) 325
AfiI CCNNNNNNNGG 2 cut(s) 40, 207
AgsI TTSAA 2 cut(s) 40, 275
AluBI AGCT 1 cut(s) 241
AluI AGCT 1 cut(s) 241
Alw26I GTCTC 2 cut(s) 98, 300
AlwI GGATC 3 cut(s) 122, 173, 181
Ama87I CYCGRG 1 cut(s) 319
Aor51HI AGCGCT 1 cut(s) 325
AoxI GGCC 1 cut(s) 76
AspLEI GCGC 3 cut(s) 124, 289, 326
AspS9I GGNCC 1 cut(s) 109
AsuHPI GGTGA 6 cut(s) 73, 88, 132, 142, 380, 389
AsuNHI GCTAGC 1 cut(s) 283
AvaI CYCGRG 1 cut(s) 319
AvaII GGWCC 1 cut(s) 109
BbvCI CCTCAGC 1 cut(s) 237
BcgI CGANNNNNNTGC 2 cut(s) 324, 358
BcoDI GTCTC 2 cut(s) 98, 300
BfaI CTAG 1 cut(s) 284
BfoI RGCGCY 2 cut(s) 290, 327
Bme18I GGWCC 1 cut(s) 109
BmeT110I CYCGRG 1 cut(s) 319
BmgT120I GGNCC 1 cut(s) 109
BmiI GGNNCC 1 cut(s) 111
BmsI GCATC 1 cut(s) 344
BmtI GCTAGC 1 cut(s) 287
BplI GAGNNNNNCTC 2 cut(s) 313, 345
Bpu10I CCTNAGC 1 cut(s) 237
BsaHI GRCGYC 1 cut(s) 356
BsaI GGTCTC 1 cut(s) 98
BsaJI CCNNGG 3 cut(s) 66, 88, 350
Bsc4I CCNNNNNNNGG 2 cut(s) 40, 207
Bse118I RCCGGY 1 cut(s) 106
Bse3DI GCAATG 1 cut(s) 158
BseDI CCNNGG 3 cut(s) 66, 88, 350
BseGI GGATG 1 cut(s) 225
BseLI CCNNNNNNNGG 2 cut(s) 40, 207
BseMI GCAATG 1 cut(s) 158
BseMII CTCAG 1 cut(s) 251
BseRI GAGGAG 2 cut(s) 106, 288
BshFI GGCC 1 cut(s) 78
BsiHKCI CYCGRG 1 cut(s) 319
BsiSI CCGG 1 cut(s) 107
BslFI GGGAC 2 cut(s) 95, 183
BslI CCNNNNNNNGG 2 cut(s) 40, 207
BsmAI GTCTC 2 cut(s) 98, 300
BsmBI CGTCTC 1 cut(s) 300
BsmFI GGGAC 2 cut(s) 95, 183
BsnI GGCC 1 cut(s) 78
Bso31I GGTCTC 1 cut(s) 98
BsoBI CYCGRG 1 cut(s) 319
Bsp143I GATC 4 cut(s) 127, 165, 173, 407
Bsp19I CCATGG 1 cut(s) 350
BspACI CCGC 6 cut(s) 104, 163, 171, 217, 302, 375
BspANI GGCC 1 cut(s) 78
BspCNI CTCAG 1 cut(s) 250
BspLI GGNNCC 1 cut(s) 111
BspOI GCTAGC 1 cut(s) 287
BspPI GGATC 3 cut(s) 122, 173, 181
BspTNI GGTCTC 1 cut(s) 98
BsrDI GCAATG 1 cut(s) 158
BsrFI RCCGGY 1 cut(s) 106
BssAI RCCGGY 1 cut(s) 106
BssECI CCNNGG 3 cut(s) 66, 88, 350
BssMI GATC 4 cut(s) 127, 165, 173, 407
BssNI GRCGYC 1 cut(s) 356
BssT1I CCWWGG 2 cut(s) 66, 350
Bst4CI ACNGT 1 cut(s) 294
Bst6I CTCTTC 3 cut(s) 41, 142, 318
BstACI GRCGYC 1 cut(s) 356
BstC8I GCNNGC 1 cut(s) 285
BstDEI CTNAG 1 cut(s) 237
BstDSI CCRYGG 1 cut(s) 350
BstENI CCTNNNNNAGG 1 cut(s) 38
BstF5I GGATG 1 cut(s) 225
BstH2I RGCGCY 2 cut(s) 290, 327
BstHHI GCGC 3 cut(s) 124, 289, 326
BstKTI GATC 4 cut(s) 130, 168, 176, 410
BstMAI GTCTC 2 cut(s) 98, 300
BstMBI GATC 4 cut(s) 127, 165, 173, 407
BstMWI GCNNNNNNNGC 1 cut(s) 332
BstX2I RGATCY 2 cut(s) 165, 173
BstYI RGATCY 2 cut(s) 165, 173
BsuRI GGCC 1 cut(s) 78
BtgI CCRYGG 1 cut(s) 350
BtgZI GCGATG 1 cut(s) 327
BtsCI GGATG 1 cut(s) 225
Cac8I GCNNGC 1 cut(s) 285
CfoI GCGC 3 cut(s) 124, 289, 326
Cfr10I RCCGGY 1 cut(s) 106
Cfr13I GGNCC 1 cut(s) 109
CseI GACGC 1 cut(s) 364
CviAII CATG 3 cut(s) 184, 207, 351
CviJI RGCY 6 cut(s) 78, 228, 241, 248, 263, 283
CviKI_1 RGCY 6 cut(s) 78, 228, 241, 248, 263, 283
DdeI CTNAG 1 cut(s) 237
DpnI GATC 4 cut(s) 129, 167, 175, 409
DpnII GATC 4 cut(s) 127, 165, 173, 407
Eam1104I CTCTTC 3 cut(s) 41, 142, 318
EarI CTCTTC 3 cut(s) 41, 142, 318
EciI GGCGGA 2 cut(s) 93, 291
Eco130I CCWWGG 2 cut(s) 66, 350
Eco31I GGTCTC 1 cut(s) 98
Eco47I GGWCC 1 cut(s) 109
Eco47III AGCGCT 1 cut(s) 325
Eco57I CTGAAG 1 cut(s) 129
Eco88I CYCGRG 1 cut(s) 319
EcoNI CCTNNNNNAGG 1 cut(s) 38
EcoT14I CCWWGG 2 cut(s) 66, 350
EcoT22I ATGCAT 1 cut(s) 185
ErhI CCWWGG 2 cut(s) 66, 350
Esp3I CGTCTC 1 cut(s) 300
FaeI CATG 3 cut(s) 187, 210, 354
FaiI YATR 4 cut(s) 181, 185, 208, 352
FaqI GGGAC 2 cut(s) 95, 183
FatI CATG 3 cut(s) 183, 206, 350
FokI GGATG 1 cut(s) 232
FspBI CTAG 1 cut(s) 284
GlaI GCGC 3 cut(s) 123, 288, 325
HaeII RGCGCY 2 cut(s) 290, 327
HaeIII GGCC 1 cut(s) 78
HapII CCGG 1 cut(s) 107
HgaI GACGC 1 cut(s) 364
HhaI GCGC 3 cut(s) 124, 289, 326
Hin1I GRCGYC 1 cut(s) 356
Hin1II CATG 3 cut(s) 187, 210, 354
Hin6I GCGC 3 cut(s) 122, 287, 324
HinP1I GCGC 3 cut(s) 122, 287, 324
HinfI GANTC 1 cut(s) 155
HpaII CCGG 1 cut(s) 107
HphI GGTGA 6 cut(s) 73, 88, 132, 142, 380, 389
Hpy99I CGWCG 1 cut(s) 20
HpyAV CCTTC 2 cut(s) 153, 315
HpyCH4III ACNGT 1 cut(s) 294
HpyCH4V TGCA 3 cut(s) 183, 268, 335
HpyF10VI GCNNNNNNNGC 1 cut(s) 332
HpyF3I CTNAG 1 cut(s) 237
Hsp92I GRCGYC 1 cut(s) 356
Hsp92II CATG 3 cut(s) 187, 210, 354
HspAI GCGC 3 cut(s) 122, 287, 324
Kzo9I GATC 4 cut(s) 127, 165, 173, 407
LpnPI CCDG 3 cut(s) 120, 234, 345
LweI GCATC 1 cut(s) 344
MaeI CTAG 1 cut(s) 284
MaeIII GTNAC 1 cut(s) 148
MalI GATC 4 cut(s) 129, 167, 175, 409
MboI GATC 4 cut(s) 127, 165, 173, 407
MboII GAAGA 5 cut(s) 28, 129, 287, 300, 305
MflI RGATCY 2 cut(s) 165, 173
MluCI AATT 1 cut(s) 270
MlyI GAGTC 1 cut(s) 164
Mph1103I ATGCAT 1 cut(s) 185
MspI CCGG 1 cut(s) 107
MwoI GCNNNNNNNGC 1 cut(s) 332
NcoI CCATGG 1 cut(s) 350
NdeII GATC 4 cut(s) 127, 165, 173, 407
NheI GCTAGC 1 cut(s) 283
NlaIII CATG 3 cut(s) 187, 210, 354
NlaIV GGNNCC 1 cut(s) 111
NmuCI GTSAC 1 cut(s) 148
NsiI ATGCAT 1 cut(s) 185
PaeR7I CTCGAG 1 cut(s) 319
PleI GAGTC 1 cut(s) 163
PpsI GAGTC 1 cut(s) 163
PspN4I GGNNCC 1 cut(s) 111
PspPI GGNCC 1 cut(s) 109
PspXI VCTCGAGB 1 cut(s) 319
PsuI RGATCY 2 cut(s) 165, 173
Sau3AI GATC 4 cut(s) 127, 165, 173, 407
Sau96I GGNCC 1 cut(s) 109
SchI GAGTC 1 cut(s) 164
SetI ASST 7 cut(s) 45, 72, 86, 101, 145, 238, 243
SfaNI GCATC 1 cut(s) 344
Sfr274I CTCGAG 1 cut(s) 319
SinI GGWCC 1 cut(s) 109
SlaI CTCGAG 1 cut(s) 319
SmlI CTYRAG 1 cut(s) 319
SmoI CTYRAG 1 cut(s) 319
Sse9I AATT 1 cut(s) 270
SsiI CCGC 6 cut(s) 104, 163, 171, 217, 302, 375
SspMI CTAG 1 cut(s) 284
StyI CCWWGG 2 cut(s) 66, 350
TaaI ACNGT 1 cut(s) 294
TaqI TCGA 2 cut(s) 320, 406
TaqII GACCGA 1 cut(s) 80
TasI AATT 1 cut(s) 270
TseFI GTSAC 1 cut(s) 148
Tsp45I GTSAC 1 cut(s) 148
VpaK11BI GGWCC 1 cut(s) 109
XagI CCTNNNNNAGG 1 cut(s) 38
XhoI CTCGAG 1 cut(s) 319
XspI CTAG 1 cut(s) 284
Zsp2I ATGCAT 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.