Rroxscaffold_6G00405670

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Reverse (-)
28119147 .. 28119929
783 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_6G00405670.1

Sequence Viewer

Length: 162 bp
ATGTTCTTCCTCACCTACTCAAAACCCCCAATTTCATTTCTCTCTCCAGACATGATGGCAACTCTGTGTCTCAGGGCCACTCCCTCTTCCATTCTCTCGCTTTCTCTCACCTCCCAAACACCACGACCACCTCCTCTCTTTCCCCAAAATCCACATCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

53

Amino Acids

5.87

Weight (kDa)

9.3

Isoelectric Point (pI)

58.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Alw26I GTCTC 1 cut(s) 74
AoxI GGCC 1 cut(s) 75
AspS9I GGNCC 1 cut(s) 75
AsuHPI GGTGA 2 cut(s) 4, 100
BccI CCATC 1 cut(s) 49
BcoDI GTCTC 1 cut(s) 74
BmgT120I GGNCC 1 cut(s) 75
BpmI CTGGAG 1 cut(s) 30
BseGI GGATG 1 cut(s) 154
BseMII CTCAG 1 cut(s) 85
BseRI GAGGAG 1 cut(s) 123
BshFI GGCC 1 cut(s) 77
BsmAI GTCTC 1 cut(s) 74
BsnI GGCC 1 cut(s) 77
BspANI GGCC 1 cut(s) 77
BspCNI CTCAG 1 cut(s) 84
Bst6I CTCTTC 1 cut(s) 91
BstDEI CTNAG 1 cut(s) 71
BstF5I GGATG 1 cut(s) 154
BstMAI GTCTC 1 cut(s) 74
BsuRI GGCC 1 cut(s) 77
BtsCI GGATG 1 cut(s) 154
Cfr13I GGNCC 1 cut(s) 75
CviAII CATG 1 cut(s) 52
CviJI RGCY 1 cut(s) 77
CviKI_1 RGCY 1 cut(s) 77
DdeI CTNAG 1 cut(s) 71
Eam1104I CTCTTC 1 cut(s) 91
EarI CTCTTC 1 cut(s) 91
FaeI CATG 1 cut(s) 55
FaiI YATR 1 cut(s) 53
FatI CATG 1 cut(s) 51
FokI GGATG 1 cut(s) 141
GsuI CTGGAG 1 cut(s) 30
HaeIII GGCC 1 cut(s) 77
Hin1II CATG 1 cut(s) 55
HphI GGTGA 2 cut(s) 4, 100
Hpy188III TCNNGA 1 cut(s) 47
HpyF3I CTNAG 1 cut(s) 71
Hsp92II CATG 1 cut(s) 55
LpnPI CCDG 2 cut(s) 58, 60
MboII GAAGA 1 cut(s) 78
MluCI AATT 1 cut(s) 30
MnlI CCTC 5 cut(s) 20, 94, 121, 141, 144
NlaIII CATG 1 cut(s) 55
PspPI GGNCC 1 cut(s) 75
Sau96I GGNCC 1 cut(s) 75
SetI ASST 3 cut(s) 17, 113, 133
SgeI CNNG 5 cut(s) 59, 64, 85, 109, 135
Sse9I AATT 1 cut(s) 30
TasI AATT 1 cut(s) 30
TspDTI ATGAA 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.