Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0005250

Physical Location & Seq

Genomic Coordinates Reverse (-)

60899264 .. 60902600

Gene Structure 3337 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG448800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGGCCTTACCTCCCTTAGTCTCACCCCACCTCTCGGCCGGTCCCCTCCTCTGCACCCGATCCTCCCTCTTCGCCTTCAGTCACCGAGTCAATGCCTCAGCGATCTCCGAGTTGCTGCAGATCTCCGTGCATGATCTGGTTTTGTTCCTCTGCACCGTTGCGGCAGATGTTTGGCCCTCCACCTCAGCTTTCGACTGGATATTTGAAGGCTTGTTGCCGTTGCAGGAGTACGTTGAGCCGGGTACTTTGCACCATCAATCGGGATCGAATATGGAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TBCC

Protein Analysis

93

Amino Acids

10.14

Weight (kDa)

5.27

Isoelectric Point (pI)

55.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005250)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10810 AT4G24026
fragaria_vesca	FvH4_5g11470
malus_domestica	MD06G1113400.v1.1 MD14G1134500.v1.1
prunus_persica	Prupe.5G126200_v2.0.a1
pyrus_communis	pycom06g10600
rosa_chinensis	RchiOBHm_Chr7g0186341
rosa_laevigata	RLG00000002143 RLG00000011413 RLG00000018050 RLG00000022479 RLG00000023922
rosa_multiflora	Rmu_sc0000645.1_g000049
rosa_roxburghii	Rroxscaffold_3G00236320 Rroxscaffold_6G00405670
rosa_rugosa	Rorug06G0473600
rosa_samantha	Rh1AG244700 Rh1BG185600 Rh1CG228500 Rh1DG011600 Rh1DG169800 Rh1DG215300 Rh2AG461800 Rh2CG448800 Rh6AG315700 Rh6BG340900 Rh6CG328700
rosa_wichuraiana	Rw7G006740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	161
AclWI	GGATC	2 cut(s)	54, 271
AcoI	YGGCCR	1 cut(s)	36
AcuI	CTGAAG	1 cut(s)	61
AfaI	GTAC	2 cut(s)	230, 244
AfiI	CCNNNNNNNGG	2 cut(s)	34, 259
AgsI	TTSAA	1 cut(s)	206
AluBI	AGCT	1 cut(s)	188
AluI	AGCT	1 cut(s)	188
Alw26I	GTCTC	1 cut(s)	25
AlwI	GGATC	2 cut(s)	54, 271
AoxI	GGCC	3 cut(s)	3, 36, 173
ApeKI	GCWGC	1 cut(s)	115
ArsI	GACNNNNNNTTYG	2 cut(s)	185, 217
AspS9I	GGNCC	2 cut(s)	41, 174
AsuC2I	CCSGG	1 cut(s)	240
AsuHPI	GGTGA	2 cut(s)	15, 74
AvaII	GGWCC	1 cut(s)	41
BbvCI	CCTCAGC	2 cut(s)	97, 184
BbvI	GCAGC	1 cut(s)	102
BccI	CCATC	1 cut(s)	261
BceAI	ACGGC	1 cut(s)	202
BcnI	CCSGG	1 cut(s)	240
BcoDI	GTCTC	1 cut(s)	25
BfmI	CTRYAG	1 cut(s)	116
BglII	AGATCT	1 cut(s)	120
BisI	GCNGC	2 cut(s)	116, 162
BlsI	GCNGC	2 cut(s)	117, 163
Bme1390I	CCNGG	1 cut(s)	240
Bme18I	GGWCC	1 cut(s)	41
BmgT120I	GGNCC	2 cut(s)	41, 174
BmiI	GGNNCC	1 cut(s)	43
BmrFI	CCNGG	1 cut(s)	240
Bpu10I	CCTNAGC	2 cut(s)	97, 184
BpuMI	CCSGG	1 cut(s)	240
Bsc4I	CCNNNNNNNGG	2 cut(s)	34, 259
Bse118I	RCCGGY	1 cut(s)	38
Bse1I	ACTGG	1 cut(s)	200
BseLI	CCNNNNNNNGG	2 cut(s)	34, 259
BseMII	CTCAG	2 cut(s)	111, 198
BseNI	ACTGG	1 cut(s)	200
BseRI	GAGGAG	1 cut(s)	38
BseX3I	CGGCCG	1 cut(s)	36
BseXI	GCAGC	1 cut(s)	102
BsgI	GTGCAG	2 cut(s)	37, 136
Bsh1285I	CGRYCG	1 cut(s)	39
BshFI	GGCC	3 cut(s)	5, 38, 175
BsiEI	CGRYCG	1 cut(s)	39
BsiSI	CCGG	2 cut(s)	39, 239
BslFI	GGGAC	1 cut(s)	27
BslI	CCNNNNNNNGG	2 cut(s)	34, 259
BsmAI	GTCTC	1 cut(s)	25
BsmFI	GGGAC	1 cut(s)	27
BsnI	GGCC	3 cut(s)	5, 38, 175
Bsp143I	GATC	5 cut(s)	59, 102, 120, 133, 263
BspACI	CCGC	1 cut(s)	161
BspANI	GGCC	3 cut(s)	5, 38, 175
BspCNI	CTCAG	2 cut(s)	110, 197
BspLI	GGNNCC	1 cut(s)	43
BspMAI	CTGCAG	1 cut(s)	120
BspPI	GGATC	2 cut(s)	54, 271
BsrFI	RCCGGY	1 cut(s)	38
BsrI	ACTGG	1 cut(s)	200
BssAI	RCCGGY	1 cut(s)	38
BssMI	GATC	5 cut(s)	59, 102, 120, 133, 263
Bst4CI	ACNGT	1 cut(s)	157
Bst6I	CTCTTC	1 cut(s)	74
BstDEI	CTNAG	3 cut(s)	16, 97, 184
BstKTI	GATC	5 cut(s)	62, 105, 123, 136, 266
BstMAI	GTCTC	1 cut(s)	25
BstMBI	GATC	5 cut(s)	59, 102, 120, 133, 263
BstMCI	CGRYCG	1 cut(s)	39
BstSCI	CCNGG	1 cut(s)	238
BstSFI	CTRYAG	1 cut(s)	116
BstV1I	GCAGC	1 cut(s)	102
BstX2I	RGATCY	1 cut(s)	120
BstYI	RGATCY	1 cut(s)	120
BstZI	CGGCCG	1 cut(s)	36
BsuRI	GGCC	3 cut(s)	5, 38, 175
Cfr10I	RCCGGY	1 cut(s)	38
Cfr13I	GGNCC	2 cut(s)	41, 174
Csp6I	GTAC	2 cut(s)	229, 243
CviAII	CATG	1 cut(s)	131
CviJI	RGCY	6 cut(s)	5, 38, 175, 188, 210, 238
CviKI_1	RGCY	6 cut(s)	5, 38, 175, 188, 210, 238
CviQI	GTAC	2 cut(s)	229, 243
DdeI	CTNAG	3 cut(s)	16, 97, 184
DpnI	GATC	5 cut(s)	61, 104, 122, 135, 265
DpnII	GATC	5 cut(s)	59, 102, 120, 133, 263
EaeI	YGGCCR	1 cut(s)	36
EagI	CGGCCG	1 cut(s)	36
Eam1104I	CTCTTC	1 cut(s)	74
EarI	CTCTTC	1 cut(s)	74
EclXI	CGGCCG	1 cut(s)	36
Eco47I	GGWCC	1 cut(s)	41
Eco52I	CGGCCG	1 cut(s)	36
Eco57I	CTGAAG	1 cut(s)	61
FaeI	CATG	1 cut(s)	134
FaiI	YATR	2 cut(s)	132, 272
FaqI	GGGAC	1 cut(s)	27
FatI	CATG	1 cut(s)	130
Fnu4HI	GCNGC	2 cut(s)	116, 162
Fsp4HI	GCNGC	2 cut(s)	116, 162
GluI	GCNGC	2 cut(s)	116, 162
HaeIII	GGCC	3 cut(s)	5, 38, 175
HapII	CCGG	2 cut(s)	39, 239
Hin1II	CATG	1 cut(s)	134
HinfI	GANTC	1 cut(s)	87
HpaII	CCGG	2 cut(s)	39, 239
HphI	GGTGA	2 cut(s)	15, 74
Hpy188I	TCNGA	1 cut(s)	109
Hpy188III	TCNNGA	1 cut(s)	261
HpyAV	CCTTC	2 cut(s)	85, 200
HpyCH4III	ACNGT	1 cut(s)	157
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	6 cut(s)	54, 118, 130, 153, 223, 250
HpyF3I	CTNAG	3 cut(s)	16, 97, 184
HpySE526I	ACGT	1 cut(s)	231
Hsp92II	CATG	1 cut(s)	134
Kzo9I	GATC	5 cut(s)	59, 102, 120, 133, 263
LpnPI	CCDG	5 cut(s)	52, 122, 181, 209, 252
Lsp1109I	GCAGC	1 cut(s)	102
MaeII	ACGT	1 cut(s)	231
MaeIII	GTNAC	1 cut(s)	80
MalI	GATC	5 cut(s)	61, 104, 122, 135, 265
MboI	GATC	5 cut(s)	59, 102, 120, 133, 263
MboII	GAAGA	1 cut(s)	61
MflI	RGATCY	1 cut(s)	120
MlyI	GAGTC	1 cut(s)	96
MspI	CCGG	2 cut(s)	39, 239
MspR9I	CCNGG	1 cut(s)	240
NciI	CCSGG	1 cut(s)	240
NdeII	GATC	5 cut(s)	59, 102, 120, 133, 263
NlaIII	CATG	1 cut(s)	134
NlaIV	GGNNCC	1 cut(s)	43
NmeAIII	GCCGAG	1 cut(s)	14
NmuCI	GTSAC	1 cut(s)	80
PkrI	GCNGC	2 cut(s)	117, 163
PleI	GAGTC	1 cut(s)	95
PpsI	GAGTC	1 cut(s)	95
PspN4I	GGNNCC	1 cut(s)	43
PspPI	GGNCC	2 cut(s)	41, 174
PstI	CTGCAG	1 cut(s)	120
PsuI	RGATCY	1 cut(s)	120
RsaI	GTAC	2 cut(s)	230, 244
RsaNI	GTAC	2 cut(s)	229, 243
SatI	GCNGC	2 cut(s)	116, 162
Sau3AI	GATC	5 cut(s)	59, 102, 120, 133, 263
Sau96I	GGNCC	2 cut(s)	41, 174
SchI	GAGTC	1 cut(s)	96
ScrFI	CCNGG	1 cut(s)	240
SetI	ASST	5 cut(s)	13, 33, 185, 190, 234
SfcI	CTRYAG	1 cut(s)	116
SinI	GGWCC	1 cut(s)	41
SsiI	CCGC	1 cut(s)	161
StyD4I	CCNGG	1 cut(s)	238
TaaI	ACNGT	1 cut(s)	157
TaiI	ACGT	1 cut(s)	234
TaqI	TCGA	2 cut(s)	192, 266
TauI	GCSGC	1 cut(s)	164
TseFI	GTSAC	1 cut(s)	80
TseI	GCWGC	1 cut(s)	115
Tsp45I	GTSAC	1 cut(s)	80
TspGWI	ACGGA	1 cut(s)	115
VpaK11BI	GGWCC	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.