Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0005250

Physical Location & Seq

Genomic Coordinates Reverse (-)

30063152 .. 30063886

Gene Structure 735 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023922

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGTCGTCATTCCCCGTCGTCGAGCACATCGTCCTCTTTAAGGTCAAAGACAACACCAATCCCTCCAAGGTCAAAGGCCTCACCTCCCTCGGTCTCACCCCACCTCTCCGCCGGTCCCCTCCTCTGCACCCTATCCACCCTCTTCACCTTCAATCACCGAGTCAACGCCGCAACGATCTCCTAGTTGCTGTCAGCGCCACCGTCTCCTCCGCCTTCTTCTCTACCCTCGAGAGCTTCTCCTGCGTCAACGTCGCCACCACGAACGCCGACGAGGACGACAATGACGACGAGGCCGCCCACCACCCTCTCGCTCTCACCAATCTCACCCGCTCTGATCAACAGCACCACCAAGCAAACGCAAACGACATCGCTCAGTTCCCCGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

129

Amino Acids

13.98

Weight (kDa)

6.01

Isoelectric Point (pI)

60.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005250)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10810 AT4G24026
fragaria_vesca	FvH4_5g11470
malus_domestica	MD06G1113400.v1.1 MD14G1134500.v1.1
prunus_persica	Prupe.5G126200_v2.0.a1
pyrus_communis	pycom06g10600
rosa_chinensis	RchiOBHm_Chr7g0186341
rosa_laevigata	RLG00000002143 RLG00000011413 RLG00000018050 RLG00000022479 RLG00000023922
rosa_multiflora	Rmu_sc0000645.1_g000049
rosa_roxburghii	Rroxscaffold_3G00236320 Rroxscaffold_6G00405670
rosa_rugosa	Rorug06G0473600
rosa_samantha	Rh1AG244700 Rh1BG185600 Rh1CG228500 Rh1DG011600 Rh1DG169800 Rh1DG215300 Rh2AG461800 Rh2CG448800 Rh6AG315700 Rh6BG340900 Rh6CG328700
rosa_wichuraiana	Rw7G006740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	330
AciI	CCGC	5 cut(s)	109, 169, 210, 294, 328
AfiI	CCNNNNNNNGG	1 cut(s)	40
AgsI	TTSAA	1 cut(s)	152
AluBI	AGCT	1 cut(s)	234
AluI	AGCT	1 cut(s)	234
Alw21I	GWGCWC	1 cut(s)	27
Alw26I	GTCTC	2 cut(s)	98, 208
Ama87I	CYCGRG	1 cut(s)	227
AoxI	GGCC	2 cut(s)	76, 291
AspLEI	GCGC	1 cut(s)	197
AspS9I	GGNCC	1 cut(s)	114
AsuHPI	GGTGA	6 cut(s)	73, 88, 137, 147, 307, 316
AvaI	CYCGRG	1 cut(s)	227
AvaII	GGWCC	1 cut(s)	114
Bbv12I	GWGCWC	1 cut(s)	27
BclI	TGATCA	1 cut(s)	334
BcoDI	GTCTC	2 cut(s)	98, 208
BfaI	CTAG	1 cut(s)	182
BfoI	RGCGCY	1 cut(s)	198
BisI	GCNGC	2 cut(s)	169, 294
BlsI	GCNGC	2 cut(s)	170, 295
Bme18I	GGWCC	1 cut(s)	114
BmeT110I	CYCGRG	1 cut(s)	227
BmgT120I	GGNCC	1 cut(s)	114
BmiI	GGNNCC	1 cut(s)	116
BplI	GAGNNNNNCTC	2 cut(s)	221, 253
BsaI	GGTCTC	1 cut(s)	98
BsaJI	CCNNGG	2 cut(s)	66, 88
Bsc4I	CCNNNNNNNGG	1 cut(s)	40
Bse118I	RCCGGY	1 cut(s)	111
BseDI	CCNNGG	2 cut(s)	66, 88
BseLI	CCNNNNNNNGG	1 cut(s)	40
BseMII	CTCAG	1 cut(s)	386
BseRI	GAGGAG	2 cut(s)	111, 196
BsgI	GTGCAG	1 cut(s)	110
BshFI	GGCC	2 cut(s)	78, 293
BsiHKAI	GWGCWC	1 cut(s)	27
BsiHKCI	CYCGRG	1 cut(s)	227
BsiSI	CCGG	1 cut(s)	112
BslFI	GGGAC	1 cut(s)	100
BslI	CCNNNNNNNGG	1 cut(s)	40
BsmAI	GTCTC	2 cut(s)	98, 208
BsmBI	CGTCTC	1 cut(s)	208
BsmFI	GGGAC	1 cut(s)	100
BsnI	GGCC	2 cut(s)	78, 293
Bso31I	GGTCTC	1 cut(s)	98
BsoBI	CYCGRG	1 cut(s)	227
Bsp1286I	GDGCHC	1 cut(s)	27
Bsp143I	GATC	2 cut(s)	175, 334
BspACI	CCGC	5 cut(s)	109, 169, 210, 294, 328
BspANI	GGCC	2 cut(s)	78, 293
BspCNI	CTCAG	1 cut(s)	385
BspLI	GGNNCC	1 cut(s)	116
BspTNI	GGTCTC	1 cut(s)	98
BsrBI	CCGCTC	1 cut(s)	330
BsrFI	RCCGGY	1 cut(s)	111
BssAI	RCCGGY	1 cut(s)	111
BssECI	CCNNGG	2 cut(s)	66, 88
BssMI	GATC	2 cut(s)	175, 334
BssT1I	CCWWGG	1 cut(s)	66
Bst4CI	ACNGT	1 cut(s)	202
Bst6I	CTCTTC	1 cut(s)	147
BstDEI	CTNAG	1 cut(s)	372
BstENI	CCTNNNNNAGG	1 cut(s)	38
BstH2I	RGCGCY	1 cut(s)	198
BstHHI	GCGC	1 cut(s)	197
BstKTI	GATC	2 cut(s)	178, 337
BstMAI	GTCTC	2 cut(s)	98, 208
BstMBI	GATC	2 cut(s)	175, 334
BstMWI	GCNNNNNNNGC	2 cut(s)	194, 240
BsuRI	GGCC	2 cut(s)	78, 293
BtgZI	GCGATG	1 cut(s)	352
CfoI	GCGC	1 cut(s)	197
Cfr10I	RCCGGY	1 cut(s)	111
Cfr13I	GGNCC	1 cut(s)	114
CseI	GACGC	1 cut(s)	232
CviJI	RGCY	3 cut(s)	78, 234, 293
CviKI_1	RGCY	3 cut(s)	78, 234, 293
DdeI	CTNAG	1 cut(s)	372
DpnI	GATC	2 cut(s)	177, 336
DpnII	GATC	2 cut(s)	175, 334
Eam1104I	CTCTTC	1 cut(s)	147
EarI	CTCTTC	1 cut(s)	147
EciI	GGCGGA	2 cut(s)	98, 199
Eco130I	CCWWGG	1 cut(s)	66
Eco147I	AGGCCT	1 cut(s)	78
Eco31I	GGTCTC	1 cut(s)	98
Eco47I	GGWCC	1 cut(s)	114
Eco88I	CYCGRG	1 cut(s)	227
EcoNI	CCTNNNNNAGG	1 cut(s)	38
EcoT14I	CCWWGG	1 cut(s)	66
ErhI	CCWWGG	1 cut(s)	66
Esp3I	CGTCTC	1 cut(s)	208
FaqI	GGGAC	1 cut(s)	100
FauI	CCCGC	1 cut(s)	335
FbaI	TGATCA	1 cut(s)	334
Fnu4HI	GCNGC	2 cut(s)	169, 294
Fsp4HI	GCNGC	2 cut(s)	169, 294
FspBI	CTAG	1 cut(s)	182
GlaI	GCGC	1 cut(s)	196
GluI	GCNGC	2 cut(s)	169, 294
HaeII	RGCGCY	1 cut(s)	198
HaeIII	GGCC	2 cut(s)	78, 293
HapII	CCGG	1 cut(s)	112
HgaI	GACGC	1 cut(s)	232
HhaI	GCGC	1 cut(s)	197
Hin6I	GCGC	1 cut(s)	195
HinP1I	GCGC	1 cut(s)	195
HincII	GTYRAC	2 cut(s)	164, 247
HindII	GTYRAC	2 cut(s)	164, 247
HinfI	GANTC	1 cut(s)	160
HpaII	CCGG	1 cut(s)	112
HphI	GGTGA	6 cut(s)	73, 88, 137, 147, 307, 316
Hpy166II	GTNNAC	2 cut(s)	164, 247
Hpy188I	TCNGA	2 cut(s)	334, 386
Hpy188III	TCNNGA	1 cut(s)	229
Hpy8I	GTNNAC	2 cut(s)	164, 247
Hpy99I	CGWCG	5 cut(s)	20, 23, 254, 272, 290
HpyAV	CCTTC	2 cut(s)	158, 223
HpyCH4III	ACNGT	1 cut(s)	202
HpyCH4IV	ACGT	1 cut(s)	249
HpyCH4V	TGCA	1 cut(s)	127
HpyF10VI	GCNNNNNNNGC	2 cut(s)	194, 240
HpyF3I	CTNAG	1 cut(s)	372
HpySE526I	ACGT	1 cut(s)	249
HspAI	GCGC	1 cut(s)	195
Ksp22I	TGATCA	1 cut(s)	334
Kzo9I	GATC	2 cut(s)	175, 334
LpnPI	CCDG	2 cut(s)	125, 253
MaeI	CTAG	1 cut(s)	182
MaeII	ACGT	1 cut(s)	249
MalI	GATC	2 cut(s)	177, 336
MbiI	CCGCTC	1 cut(s)	330
MboI	GATC	2 cut(s)	175, 334
MboII	GAAGA	2 cut(s)	134, 208
MhlI	GDGCHC	1 cut(s)	27
MlyI	GAGTC	1 cut(s)	169
MseI	TTAA	1 cut(s)	39
MspI	CCGG	1 cut(s)	112
MwoI	GCNNNNNNNGC	2 cut(s)	194, 240
NdeII	GATC	2 cut(s)	175, 334
NlaIV	GGNNCC	1 cut(s)	116
PaeR7I	CTCGAG	1 cut(s)	227
PceI	AGGCCT	1 cut(s)	78
PcsI	WCGNNNNNNNCGW	2 cut(s)	27, 282
PkrI	GCNGC	2 cut(s)	170, 295
PleI	GAGTC	1 cut(s)	168
PpsI	GAGTC	1 cut(s)	168
PspN4I	GGNNCC	1 cut(s)	116
PspPI	GGNCC	1 cut(s)	114
SaqAI	TTAA	1 cut(s)	39
SatI	GCNGC	2 cut(s)	169, 294
Sau3AI	GATC	2 cut(s)	175, 334
Sau96I	GGNCC	1 cut(s)	114
SchI	GAGTC	1 cut(s)	169
SduI	GDGCHC	1 cut(s)	27
SetI	ASST	7 cut(s)	45, 72, 86, 106, 150, 236, 252
Sfr274I	CTCGAG	1 cut(s)	227
SinI	GGWCC	1 cut(s)	114
SlaI	CTCGAG	1 cut(s)	227
SmlI	CTYRAG	1 cut(s)	227
SmoI	CTYRAG	1 cut(s)	227
SseBI	AGGCCT	1 cut(s)	78
SsiI	CCGC	5 cut(s)	109, 169, 210, 294, 328
SspMI	CTAG	1 cut(s)	182
StuI	AGGCCT	1 cut(s)	78
StyI	CCWWGG	1 cut(s)	66
TaaI	ACNGT	1 cut(s)	202
TaiI	ACGT	1 cut(s)	252
TaqI	TCGA	2 cut(s)	21, 228
TaqII	GACCGA	1 cut(s)	80
TauI	GCSGC	2 cut(s)	171, 296
Tru1I	TTAA	1 cut(s)	39
Tru9I	TTAA	1 cut(s)	39
VpaK11BI	GGWCC	1 cut(s)	114
XagI	CCTNNNNNAGG	1 cut(s)	38
XhoI	CTCGAG	1 cut(s)	227
XspI	CTAG	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.