FvH4_5g11470

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0005250
Physical Location & Seq
Reverse (-)
6512515 .. 6513048
534 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g11470.t1

Sequence Viewer

Length: 252 bp
ATGGAAGACGGCAACGCTAATAATAACACGGCCATCATATCCCGGGAGACGATTGACCAGGTCGCCGGCTGGGTCAGCGCCACCGTCTCCTCCGCCTTCTTCTCCTCCCTCGAGCGTTTCTCCTGCGTCAACGTCGCCACCGAAGACGACGATGATGACGAGGCCGAACACCACCCCCTGGCTCTCACCAATCTCGCCCACCCCGATCAGCAACAACACCACCCGAACGACGTCGCTCAGCTCCCCGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

84

Amino Acids

9.06

Weight (kDa)

4.16

Isoelectric Point (pI)

27.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 234
AccB7I CCANNNNNTGG 1 cut(s) 178
AciI CCGC 1 cut(s) 93
AcoI YGGCCR 1 cut(s) 30
AcyI GRCGYC 1 cut(s) 231
AfiI CCNNNNNNNGG 1 cut(s) 178
AjnI CCWGG 2 cut(s) 57, 177
AluBI AGCT 1 cut(s) 241
AluI AGCT 1 cut(s) 241
Alw26I GTCTC 2 cut(s) 41, 91
Ama87I CYCGRG 2 cut(s) 42, 110
AoxI GGCC 2 cut(s) 30, 162
AspLEI GCGC 1 cut(s) 80
AsuC2I CCSGG 2 cut(s) 43, 44
AsuHPI GGTGA 1 cut(s) 178
AvaI CYCGRG 2 cut(s) 42, 110
BbsI GAAGAC 2 cut(s) 12, 150
BccI CCATC 1 cut(s) 41
BceAI ACGGC 2 cut(s) 25, 45
BciT130I CCWGG 2 cut(s) 59, 179
BcnI CCSGG 2 cut(s) 43, 44
BcoDI GTCTC 2 cut(s) 41, 91
BfoI RGCGCY 1 cut(s) 81
BlpI GCTNAGC 1 cut(s) 237
Bme1390I CCNGG 4 cut(s) 43, 44, 59, 179
BmeT110I CYCGRG 2 cut(s) 42, 110
BmrFI CCNGG 4 cut(s) 43, 44, 59, 179
BpiI GAAGAC 2 cut(s) 12, 150
BplI GAGNNNNNCTC 2 cut(s) 104, 136
Bpu1102I GCTNAGC 1 cut(s) 237
BpuMI CCSGG 2 cut(s) 43, 44
BsaHI GRCGYC 1 cut(s) 231
BsaJI CCNNGG 2 cut(s) 42, 177
Bsc4I CCNNNNNNNGG 1 cut(s) 178
Bse118I RCCGGY 1 cut(s) 65
BseBI CCWGG 2 cut(s) 59, 179
BseDI CCNNGG 2 cut(s) 42, 177
BseLI CCNNNNNNNGG 1 cut(s) 178
BseMII CTCAG 1 cut(s) 251
BseRI GAGGAG 2 cut(s) 79, 94
BseYI CCCAGC 1 cut(s) 69
BshFI GGCC 2 cut(s) 32, 164
BsiHKCI CYCGRG 2 cut(s) 42, 110
BsiSI CCGG 2 cut(s) 43, 66
BslI CCNNNNNNNGG 1 cut(s) 178
BsmAI GTCTC 2 cut(s) 41, 91
BsmBI CGTCTC 2 cut(s) 41, 91
BsnI GGCC 2 cut(s) 32, 164
BsoBI CYCGRG 2 cut(s) 42, 110
Bsp143I GATC 1 cut(s) 205
Bsp1720I GCTNAGC 1 cut(s) 237
BspACI CCGC 1 cut(s) 93
BspANI GGCC 2 cut(s) 32, 164
BspCNI CTCAG 1 cut(s) 250
BsrFI RCCGGY 1 cut(s) 65
BssAI RCCGGY 1 cut(s) 65
BssECI CCNNGG 2 cut(s) 42, 177
BssMI GATC 1 cut(s) 205
BssNI GRCGYC 1 cut(s) 231
Bst2UI CCWGG 2 cut(s) 59, 179
Bst4CI ACNGT 1 cut(s) 85
BstACI GRCGYC 1 cut(s) 231
BstC8I GCNNGC 1 cut(s) 67
BstDEI CTNAG 1 cut(s) 237
BstH2I RGCGCY 1 cut(s) 81
BstHHI GCGC 1 cut(s) 80
BstKTI GATC 1 cut(s) 208
BstMAI GTCTC 2 cut(s) 41, 91
BstMBI GATC 1 cut(s) 205
BstMWI GCNNNNNNNGC 1 cut(s) 75
BstNI CCWGG 2 cut(s) 59, 179
BstSCI CCNGG 4 cut(s) 41, 42, 57, 177
BstV2I GAAGAC 2 cut(s) 12, 150
BsuRI GGCC 2 cut(s) 32, 164
Cac8I GCNNGC 1 cut(s) 67
CfoI GCGC 1 cut(s) 80
Cfr10I RCCGGY 1 cut(s) 65
Cfr9I CCCGGG 1 cut(s) 42
CseI GACGC 1 cut(s) 115
CsiI ACCWGGT 1 cut(s) 57
CviJI RGCY 5 cut(s) 32, 69, 164, 182, 241
CviKI_1 RGCY 5 cut(s) 32, 69, 164, 182, 241
DdeI CTNAG 1 cut(s) 237
DpnI GATC 1 cut(s) 207
DpnII GATC 1 cut(s) 205
EaeI YGGCCR 1 cut(s) 30
EciI GGCGGA 1 cut(s) 82
Eco88I CYCGRG 2 cut(s) 42, 110
EcoRII CCWGG 2 cut(s) 57, 177
Esp3I CGTCTC 2 cut(s) 41, 91
FaiI YATR 1 cut(s) 38
GlaI GCGC 1 cut(s) 79
GsaI CCCAGC 1 cut(s) 73
HaeII RGCGCY 1 cut(s) 81
HaeIII GGCC 2 cut(s) 32, 164
HapII CCGG 2 cut(s) 43, 66
HgaI GACGC 1 cut(s) 115
HhaI GCGC 1 cut(s) 80
Hin1I GRCGYC 1 cut(s) 231
Hin6I GCGC 1 cut(s) 78
HinP1I GCGC 1 cut(s) 78
HincII GTYRAC 1 cut(s) 130
HindII GTYRAC 1 cut(s) 130
HpaII CCGG 2 cut(s) 43, 66
HphI GGTGA 1 cut(s) 178
Hpy166II GTNNAC 1 cut(s) 130
Hpy188I TCNGA 1 cut(s) 251
Hpy8I GTNNAC 1 cut(s) 130
Hpy99I CGWCG 4 cut(s) 137, 152, 233, 236
HpyAV CCTTC 1 cut(s) 106
HpyCH4III ACNGT 1 cut(s) 85
HpyCH4IV ACGT 2 cut(s) 132, 231
HpyF10VI GCNNNNNNNGC 1 cut(s) 75
HpyF3I CTNAG 1 cut(s) 237
HpySE526I ACGT 2 cut(s) 132, 231
Hsp92I GRCGYC 1 cut(s) 231
HspAI GCGC 1 cut(s) 78
KroI GCCGGC 1 cut(s) 65
KroNI GCCGGC 1 cut(s) 67
Kzo9I GATC 1 cut(s) 205
LmnI GCTCC 1 cut(s) 246
LpnPI CCDG 8 cut(s) 44, 55, 56, 71, 79, 136, 164, 191
MabI ACCWGGT 1 cut(s) 57
MaeII ACGT 2 cut(s) 132, 231
MalI GATC 1 cut(s) 207
MboI GATC 1 cut(s) 205
MboII GAAGA 3 cut(s) 17, 91, 155
MnlI CCTC 4 cut(s) 100, 115, 119, 154
MroNI GCCGGC 1 cut(s) 65
MspI CCGG 2 cut(s) 43, 66
MspR9I CCNGG 4 cut(s) 43, 44, 59, 179
MvaI CCWGG 2 cut(s) 59, 179
MwoI GCNNNNNNNGC 1 cut(s) 75
NaeI GCCGGC 1 cut(s) 67
NciI CCSGG 2 cut(s) 43, 44
NdeII GATC 1 cut(s) 205
NgoMIV GCCGGC 1 cut(s) 65
PaeR7I CTCGAG 1 cut(s) 110
PcsI WCGNNNNNNNCGW 3 cut(s) 138, 156, 201
PdiI GCCGGC 1 cut(s) 67
PflFI GACNNNGTC 1 cut(s) 59
PflMI CCANNNNNTGG 1 cut(s) 178
Psp6I CCWGG 2 cut(s) 57, 177
PspFI CCCAGC 1 cut(s) 69
PspGI CCWGG 2 cut(s) 57, 177
PspXI VCTCGAGB 1 cut(s) 110
PsyI GACNNNGTC 1 cut(s) 59
Sau3AI GATC 1 cut(s) 205
ScrFI CCNGG 4 cut(s) 43, 44, 59, 179
SetI ASST 4 cut(s) 63, 135, 234, 243
SexAI ACCWGGT 1 cut(s) 57
Sfr274I CTCGAG 1 cut(s) 110
SlaI CTCGAG 1 cut(s) 110
SmaI CCCGGG 1 cut(s) 44
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
SsiI CCGC 1 cut(s) 93
StyD4I CCNGG 4 cut(s) 41, 42, 57, 177
TaaI ACNGT 1 cut(s) 85
TaiI ACGT 2 cut(s) 135, 234
TaqI TCGA 1 cut(s) 111
TspMI CCCGGG 1 cut(s) 42
Tth111I GACNNNGTC 1 cut(s) 59
Van91I CCANNNNNTGG 1 cut(s) 178
XhoI CTCGAG 1 cut(s) 110
XmaI CCCGGG 1 cut(s) 42
ZraI GACGTC 1 cut(s) 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.