Rorug06G0473600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0005250
Physical Location & Seq
Forward (+)
59587008 .. 59590064
3057 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0473600.1

Sequence Viewer

Length: 1266 bp
ATGAAGAGAACAAGACAAGGAGGCCGACCTCGTACCATGTCTCAACTCTTGGAAGAAACTTCATCACGTTCTGGAAGCACAGGTCGCAGCGCAAACGAATCAGCACAGCTAACTCCTACAGCACCAGCAGTGGAAGAGCAAGTCAATACGCCAACAAGTAAAGCCACACGAGGACAGAGCAAAGGCATTCCAGAATGGAATACAGGTGTCAAAGTACATGTTCAATTTAATGGAATCAATTTCCAGCCGGTGGGAGAAAGGGCAGGTCAGCTTAAGTCACAATTGGGTCAGATAGTTCGAAATGGCCATAGAGTTCCACTAAATATTCTTGACTGGAAGAAAGTTGGTAATGATGTGAAGGAAGAAATTTGGGAAGAGGTTAAGAAAAACTTGGTGGAAGTCCCTGAAGGTTATAAATCAGTATGCTTGGAAAATTGTAATTTGCTTTGGAAGGACCATAAGAGCAAAACAAAATCGTTTCACTATGTGCCCAATAAGGACGATCCTGAACTTAGTTCTAAAAATCCTCCACATATTGTTGCAGAGCAATGGTCTGAGCTTGTTGCATATTGGAGTAGTGAGGATGCAAAGGTGATAGCAGAAAGAAATTCAGTGAACCGAGAGCTGCGTGGCCCATGTCACAAGACCGGTAGAAAGCATTTTGCCCAAGTGCGATATGAGATGGAAAAAGCTGGAGAACCAGTTGATAAGTTTAGTGTCTGGAAGAGAACACGTGACTTAAATGATCACCTTGTGCAAGAGTTCATTAAATCATATGAGGAGAAACTTAGAAAGGAGTCAGAGGAGGATCAGAACTTGACTAGTGTTAAAGATCGAATTTTCCACTCTTTGATGGGAGATGATGGTCATGGGTATTGTCGTACTTTTGGAGCTGGTGTGCCTCGTAATCTAGTATATCCAAAGGAATCAAATATATCTCAAAGCACAGATGATCTCGTACAAAAAATCACTGAACAAGTGCGTCAAGAGTTTCAACTGCAGCTTCAGCAACTACATGCTCGAATTGATTTTCTGCAGAATAAGGACAGTAGCACAGAGTCTCCTAAACAGGTTGCTGATGCAACTAGCGGGCATGAAAATTTGAGGGAGTCTATAGGAGATGAAATAACTCCAAATGCAAATAGTGACCAGCCATTGTTGGAGCAGAATTCTCCAGTAACATCCCCTTCACAAAATGGATCTGAAAGGGTTCTCATGGCAAAAAGAGCAAAGCAAATGAAAGCAAGTGCAAAGCTCACAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

421

Amino Acids

47.65

Weight (kDa)

8.64

Isoelectric Point (pI)

52.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 182 - 300 1.7e-21 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 414
Acc36I ACCTGC 1 cut(s) 254
AccB7I CCANNNNNTGG 1 cut(s) 250
AciI CCGC 1 cut(s) 1089
AclWI GGATC 3 cut(s) 497, 816, 1207
AcoI YGGCCR 1 cut(s) 304
AcsI RAATTY 5 cut(s) 366, 607, 837, 1099, 1168
AcuI CTGAAG 2 cut(s) 426, 989
AcvI CACGTG 1 cut(s) 734
AdeI CACNNNGTG 2 cut(s) 487, 754
AfaI GTAC 4 cut(s) 34, 216, 883, 960
AfiI CCNNNNNNNGG 1 cut(s) 250
AflII CTTAAG 1 cut(s) 272
AflIII ACRYGT 2 cut(s) 217, 731
AgeI ACCGGT 1 cut(s) 647
AgsI TTSAA 2 cut(s) 224, 995
AhlI ACTAGT 1 cut(s) 821
AluBI AGCT 8 cut(s) 109, 271, 559, 625, 692, 893, 1003, 1255
AluI AGCT 8 cut(s) 109, 271, 559, 625, 692, 893, 1003, 1255
Alw26I GTCTC 2 cut(s) 45, 1065
AlwI GGATC 3 cut(s) 497, 816, 1207
AoxI GGCC 3 cut(s) 22, 304, 631
ApeKI GCWGC 3 cut(s) 87, 625, 1000
ApoI RAATTY 5 cut(s) 366, 607, 837, 1099, 1168
AsiGI ACCGGT 1 cut(s) 647
Asp700I GAANNNNTTC 1 cut(s) 1209
AspLEI GCGC 1 cut(s) 92
AspS9I GGNCC 2 cut(s) 454, 632
AsuHPI GGTGA 2 cut(s) 604, 740
AsuII TTCGAA 1 cut(s) 298
AvaII GGWCC 1 cut(s) 454
BaeGI GKGCMC 1 cut(s) 492
BalI TGGCCA 1 cut(s) 306
BauI CACGAG 1 cut(s) 168
BbrPI CACGTG 1 cut(s) 734
BbvI GCAGC 3 cut(s) 99, 612, 1012
BccI CCATC 3 cut(s) 676, 847, 857
BclI TGATCA 1 cut(s) 745
BcoDI GTCTC 2 cut(s) 45, 1065
BcuI ACTAGT 1 cut(s) 821
BfaI CTAG 3 cut(s) 822, 911, 1086
BfmI CTRYAG 4 cut(s) 117, 998, 1034, 1113
BfrI CTTAAG 1 cut(s) 272
BfuAI ACCTGC 1 cut(s) 254
BisI GCNGC 3 cut(s) 88, 626, 1001
BlsI GCNGC 3 cut(s) 89, 627, 1002
Bme18I GGWCC 1 cut(s) 454
BmgT120I GGNCC 2 cut(s) 454, 632
BmsI GCATC 2 cut(s) 574, 1069
BpmI CTGGAG 2 cut(s) 714, 1158
Bpu14I TTCGAA 1 cut(s) 298
BsaAI YACGTR 1 cut(s) 734
BsaWI WCCGGW 1 cut(s) 647
BsaXI ACNNNNNCTCC 6 cut(s) 687, 717, 882, 912, 1045, 1075
Bsc4I CCNNNNNNNGG 1 cut(s) 250
Bse118I RCCGGY 2 cut(s) 247, 647
Bse1I ACTGG 3 cut(s) 338, 701, 1175
Bse3DI GCAATG 1 cut(s) 554
BseGI GGATG 2 cut(s) 589, 1181
BseLI CCNNNNNNNGG 1 cut(s) 250
BseMI GCAATG 1 cut(s) 554
BseMII CTCAG 1 cut(s) 546
BseNI ACTGG 3 cut(s) 338, 701, 1175
BseRI GAGGAG 2 cut(s) 794, 818
BseSI GKGCMC 1 cut(s) 492
BseXI GCAGC 3 cut(s) 99, 612, 1012
BshFI GGCC 3 cut(s) 24, 306, 633
BshTI ACCGGT 1 cut(s) 647
BsiSI CCGG 2 cut(s) 248, 648
BslFI GGGAC 1 cut(s) 386
BslI CCNNNNNNNGG 1 cut(s) 250
BsmAI GTCTC 2 cut(s) 45, 1065
BsmFI GGGAC 1 cut(s) 386
BsmI GAATGC 1 cut(s) 186
BsnI GGCC 3 cut(s) 24, 306, 633
Bsp119I TTCGAA 1 cut(s) 298
Bsp1286I GDGCHC 1 cut(s) 492
Bsp143I GATC 6 cut(s) 502, 745, 808, 832, 952, 1199
BspACI CCGC 1 cut(s) 1089
BspANI GGCC 3 cut(s) 24, 306, 633
BspCNI CTCAG 1 cut(s) 547
BspMAI CTGCAG 2 cut(s) 1002, 1038
BspMI ACCTGC 1 cut(s) 254
BspPI GGATC 3 cut(s) 497, 816, 1207
BspQI GCTCTTC 1 cut(s) 129
BspT104I TTCGAA 1 cut(s) 298
BspTI CTTAAG 1 cut(s) 272
BsrDI GCAATG 1 cut(s) 554
BsrFI RCCGGY 2 cut(s) 247, 647
BsrI ACTGG 3 cut(s) 338, 701, 1175
BssAI RCCGGY 2 cut(s) 247, 647
BssMI GATC 6 cut(s) 502, 745, 808, 832, 952, 1199
BssSI CACGAG 1 cut(s) 168
Bst2BI CACGAG 1 cut(s) 168
Bst4CI ACNGT 1 cut(s) 1049
Bst6I CTCTTC 3 cut(s) 129, 369, 719
BstAFI CTTAAG 1 cut(s) 272
BstBAI YACGTR 1 cut(s) 734
BstBI TTCGAA 1 cut(s) 298
BstC8I GCNNGC 1 cut(s) 1091
BstDEI CTNAG 3 cut(s) 512, 555, 788
BstF5I GGATG 2 cut(s) 589, 1181
BstHHI GCGC 1 cut(s) 92
BstKTI GATC 6 cut(s) 505, 748, 811, 835, 955, 1202
BstMAI GTCTC 2 cut(s) 45, 1065
BstMBI GATC 6 cut(s) 502, 745, 808, 832, 952, 1199
BstMWI GCNNNNNNNGC 3 cut(s) 84, 1006, 1226
BstNSI RCATGY 2 cut(s) 221, 1019
BstSFI CTRYAG 4 cut(s) 117, 998, 1034, 1113
BstSLI GKGCMC 1 cut(s) 492
BstV1I GCAGC 3 cut(s) 99, 612, 1012
BstX2I RGATCY 1 cut(s) 1199
BstYI RGATCY 1 cut(s) 1199
BsuRI GGCC 3 cut(s) 24, 306, 633
BtsCI GGATG 2 cut(s) 589, 1181
BtsI GCAGTG 1 cut(s) 135
BtsIMutI CAGTG 3 cut(s) 135, 618, 969
BveI ACCTGC 1 cut(s) 254
Cac8I GCNNGC 1 cut(s) 1091
CfoI GCGC 1 cut(s) 92
Cfr10I RCCGGY 2 cut(s) 247, 647
Cfr13I GGNCC 2 cut(s) 454, 632
CseI GACGC 1 cut(s) 971
Csp6I GTAC 4 cut(s) 33, 215, 882, 959
CspAI ACCGGT 1 cut(s) 647
CviAII CATG 7 cut(s) 37, 218, 636, 869, 1016, 1094, 1216
CviQI GTAC 4 cut(s) 33, 215, 882, 959
DdeI CTNAG 3 cut(s) 512, 555, 788
DpnI GATC 6 cut(s) 504, 747, 810, 834, 954, 1201
DpnII GATC 6 cut(s) 502, 745, 808, 832, 952, 1199
DraIII CACNNNGTG 2 cut(s) 487, 754
EaeI YGGCCR 1 cut(s) 304
Eam1104I CTCTTC 3 cut(s) 129, 369, 719
EarI CTCTTC 3 cut(s) 129, 369, 719
Eco47I GGWCC 1 cut(s) 454
Eco57I CTGAAG 2 cut(s) 426, 989
Eco72I CACGTG 1 cut(s) 734
EcoRI GAATTC 1 cut(s) 1168
FaeI CATG 7 cut(s) 40, 221, 639, 872, 1019, 1097, 1219
FalI AAGNNNNNCTT 2 cut(s) 374, 406
FaqI GGGAC 1 cut(s) 386
FatI CATG 7 cut(s) 36, 217, 635, 868, 1015, 1093, 1215
FauI CCCGC 1 cut(s) 1082
FauNDI CATATG 1 cut(s) 775
FbaI TGATCA 1 cut(s) 745
Fnu4HI GCNGC 3 cut(s) 88, 626, 1001
FokI GGATG 2 cut(s) 596, 1168
Fsp4HI GCNGC 3 cut(s) 88, 626, 1001
FspBI CTAG 3 cut(s) 822, 911, 1086
GlaI GCGC 1 cut(s) 91
GluI GCNGC 3 cut(s) 88, 626, 1001
GsuI CTGGAG 2 cut(s) 714, 1158
HaeIII GGCC 3 cut(s) 24, 306, 633
HapII CCGG 2 cut(s) 248, 648
HgaI GACGC 1 cut(s) 971
HhaI GCGC 1 cut(s) 92
Hin1II CATG 7 cut(s) 40, 221, 639, 872, 1019, 1097, 1219
Hin6I GCGC 1 cut(s) 90
HinP1I GCGC 1 cut(s) 90
HinfI GANTC 6 cut(s) 98, 234, 797, 926, 1058, 1109
HpaII CCGG 2 cut(s) 248, 648
HphI GGTGA 2 cut(s) 604, 740
Hpy166II GTNNAC 1 cut(s) 616
Hpy188I TCNGA 5 cut(s) 291, 556, 802, 813, 1204
Hpy188III TCNNGA 6 cut(s) 72, 191, 329, 506, 721, 986
Hpy8I GTNNAC 1 cut(s) 616
HpyAV CCTTC 4 cut(s) 352, 401, 445, 1197
HpyCH4III ACNGT 1 cut(s) 1049
HpyCH4IV ACGT 2 cut(s) 67, 733
HpyCH4V TGCA 9 cut(s) 542, 566, 587, 757, 1000, 1036, 1082, 1139, 1250
HpyF10VI GCNNNNNNNGC 3 cut(s) 84, 1006, 1226
HpyF3I CTNAG 3 cut(s) 512, 555, 788
HpySE526I ACGT 2 cut(s) 67, 733
Hsp92II CATG 7 cut(s) 40, 221, 639, 872, 1019, 1097, 1219
HspAI GCGC 1 cut(s) 90
Ksp22I TGATCA 1 cut(s) 745
Kzo9I GATC 6 cut(s) 502, 745, 808, 832, 952, 1199
LguI GCTCTTC 1 cut(s) 129
LmnI GCTCC 2 cut(s) 890, 1162
Lsp1109I GCAGC 3 cut(s) 99, 612, 1012
LweI GCATC 2 cut(s) 574, 1069
MaeI CTAG 3 cut(s) 822, 911, 1086
MaeII ACGT 2 cut(s) 67, 733
MaeIII GTNAC 5 cut(s) 276, 638, 734, 1145, 1177
MalI GATC 6 cut(s) 504, 747, 810, 834, 954, 1201
MboI GATC 6 cut(s) 502, 745, 808, 832, 952, 1199
MboII GAAGA 7 cut(s) 16, 65, 146, 349, 374, 386, 736
MfeI CAATTG 1 cut(s) 281
MflI RGATCY 1 cut(s) 1199
MhlI GDGCHC 1 cut(s) 492
MlsI TGGCCA 1 cut(s) 306
MluNI TGGCCA 1 cut(s) 306
MlyI GAGTC 3 cut(s) 806, 1067, 1118
MmeI TCCRAC 1 cut(s) 1140
Mox20I TGGCCA 1 cut(s) 306
MroXI GAANNNNTTC 1 cut(s) 1209
MscI TGGCCA 1 cut(s) 306
MseI TTAA 6 cut(s) 228, 273, 381, 740, 768, 828
Msp20I TGGCCA 1 cut(s) 306
MspCI CTTAAG 1 cut(s) 272
MspI CCGG 2 cut(s) 248, 648
MunI CAATTG 1 cut(s) 281
Mva1269I GAATGC 1 cut(s) 186
MwoI GCNNNNNNNGC 3 cut(s) 84, 1006, 1226
NdeI CATATG 1 cut(s) 775
NdeII GATC 6 cut(s) 502, 745, 808, 832, 952, 1199
NlaIII CATG 7 cut(s) 40, 221, 639, 872, 1019, 1097, 1219
NmuCI GTSAC 4 cut(s) 276, 638, 734, 1145
NspI RCATGY 2 cut(s) 221, 1019
NspV TTCGAA 1 cut(s) 298
PciI ACATGT 1 cut(s) 217
PciSI GCTCTTC 1 cut(s) 129
PctI GAATGC 1 cut(s) 186
PdmI GAANNNNTTC 1 cut(s) 1209
PfeI GAWTC 3 cut(s) 98, 234, 926
PflMI CCANNNNNTGG 1 cut(s) 250
PinAI ACCGGT 1 cut(s) 647
PkrI GCNGC 3 cut(s) 89, 627, 1002
PleI GAGTC 3 cut(s) 805, 1066, 1117
PmaCI CACGTG 1 cut(s) 734
PmlI CACGTG 1 cut(s) 734
PpsI GAGTC 3 cut(s) 805, 1066, 1117
Ppu21I YACGTR 1 cut(s) 734
PscI ACATGT 1 cut(s) 217
PsiI TTATAA 1 cut(s) 414
PspCI CACGTG 1 cut(s) 734
PspPI GGNCC 2 cut(s) 454, 632
PstI CTGCAG 2 cut(s) 1002, 1038
PsuI RGATCY 1 cut(s) 1199
RsaI GTAC 4 cut(s) 34, 216, 883, 960
RsaNI GTAC 4 cut(s) 33, 215, 882, 959
SapI GCTCTTC 1 cut(s) 129
SaqAI TTAA 6 cut(s) 228, 273, 381, 740, 768, 828
SatI GCNGC 3 cut(s) 88, 626, 1001
Sau3AI GATC 6 cut(s) 502, 745, 808, 832, 952, 1199
Sau96I GGNCC 2 cut(s) 454, 632
SchI GAGTC 3 cut(s) 806, 1067, 1118
SduI GDGCHC 1 cut(s) 492
SfaNI GCATC 2 cut(s) 574, 1069
SfcI CTRYAG 4 cut(s) 117, 998, 1034, 1113
SfuI TTCGAA 1 cut(s) 298
SinI GGWCC 1 cut(s) 454
SmlI CTYRAG 1 cut(s) 272
SmoI CTYRAG 1 cut(s) 272
SpeI ACTAGT 1 cut(s) 821
SsiI CCGC 1 cut(s) 1089
SspI AATATT 1 cut(s) 325
SspMI CTAG 3 cut(s) 822, 911, 1086
TaaI ACNGT 1 cut(s) 1049
TaiI ACGT 2 cut(s) 70, 736
TaqI TCGA 3 cut(s) 298, 835, 1021
TatI WGTACW 1 cut(s) 214
TfiI GAWTC 3 cut(s) 98, 234, 926
Tru1I TTAA 6 cut(s) 228, 273, 381, 740, 768, 828
Tru9I TTAA 6 cut(s) 228, 273, 381, 740, 768, 828
TscAI CASTG 3 cut(s) 135, 618, 976
TseFI GTSAC 4 cut(s) 276, 638, 734, 1145
TseI GCWGC 3 cut(s) 87, 625, 1000
Tsp45I GTSAC 4 cut(s) 276, 638, 734, 1145
TspDTI ATGAA 6 cut(s) 17, 51, 754, 1110, 1137, 1253
TspRI CASTG 3 cut(s) 135, 618, 976
Van91I CCANNNNNTGG 1 cut(s) 250
Vha464I CTTAAG 1 cut(s) 272
VpaK11BI GGWCC 1 cut(s) 454
XapI RAATTY 5 cut(s) 366, 607, 837, 1099, 1168
XceI RCATGY 2 cut(s) 221, 1019
XmnI GAANNNNTTC 1 cut(s) 1209
XspI CTAG 3 cut(s) 822, 911, 1086
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.