Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0005250

Physical Location & Seq

Genomic Coordinates Reverse (-)

67928188 .. 67928872

Gene Structure 685 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG461800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGTCGTCGTGGACAACGTCCTTTTCAAGGTCAAAGACGACATCGATCCCTCCAAGGTCAATGGCCTTACCTCCCTTAGTCTCACCCCACCTCTCGGCCGGTCCCCTCCTCTGCACCCGATCCTCCCTCTTCGCCTTCAGTCACCGAGTCAATGCCTCAGCGATCTCCGAGTTGCTGCAGATCTCCGTGCATGATCTGGTTTTGTTCCTCTGCACCGTTGCGGCAGATGTTTGGCCCTCCACCTCAGCTTTCGACTGGATATTTGAAGGCTTGTTGCCGTTGCAGGAGTACGTTGAGCCGGGTACTTTGCACCATCAATCGGTATGCATATTCTCGGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

113

Amino Acids

12.37

Weight (kDa)

6.15

Isoelectric Point (pI)

61.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005250)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10810 AT4G24026
fragaria_vesca	FvH4_5g11470
malus_domestica	MD06G1113400.v1.1 MD14G1134500.v1.1
prunus_persica	Prupe.5G126200_v2.0.a1
pyrus_communis	pycom06g10600
rosa_chinensis	RchiOBHm_Chr7g0186341
rosa_laevigata	RLG00000002143 RLG00000011413 RLG00000018050 RLG00000022479 RLG00000023922
rosa_multiflora	Rmu_sc0000645.1_g000049
rosa_roxburghii	Rroxscaffold_3G00236320 Rroxscaffold_6G00405670
rosa_rugosa	Rorug06G0473600
rosa_samantha	Rh1AG244700 Rh1BG185600 Rh1CG228500 Rh1DG011600 Rh1DG169800 Rh1DG215300 Rh2AG461800 Rh2CG448800 Rh6AG315700 Rh6BG340900 Rh6CG328700
rosa_wichuraiana	Rw7G006740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	221
AclWI	GGATC	2 cut(s)	40, 114
AcoI	YGGCCR	1 cut(s)	96
AcuI	CTGAAG	1 cut(s)	121
AfaI	GTAC	2 cut(s)	290, 304
AfiI	CCNNNNNNNGG	3 cut(s)	27, 94, 319
AgsI	TTSAA	2 cut(s)	27, 266
AluBI	AGCT	1 cut(s)	248
AluI	AGCT	1 cut(s)	248
Alw26I	GTCTC	1 cut(s)	85
AlwI	GGATC	2 cut(s)	40, 114
AoxI	GGCC	3 cut(s)	63, 96, 233
ApeKI	GCWGC	1 cut(s)	175
ArsI	GACNNNNNNTTYG	2 cut(s)	245, 277
AspS9I	GGNCC	2 cut(s)	101, 234
AsuC2I	CCSGG	1 cut(s)	300
AsuHPI	GGTGA	2 cut(s)	75, 134
AvaII	GGWCC	1 cut(s)	101
BbvCI	CCTCAGC	2 cut(s)	157, 244
BbvI	GCAGC	1 cut(s)	162
BccI	CCATC	1 cut(s)	321
BceAI	ACGGC	1 cut(s)	262
BcnI	CCSGG	1 cut(s)	300
BcoDI	GTCTC	1 cut(s)	85
BfaI	CTAG	1 cut(s)	340
BfmI	CTRYAG	1 cut(s)	176
BglII	AGATCT	1 cut(s)	180
BisI	GCNGC	2 cut(s)	176, 222
BlsI	GCNGC	2 cut(s)	177, 223
Bme1390I	CCNGG	1 cut(s)	300
Bme18I	GGWCC	1 cut(s)	101
BmgT120I	GGNCC	2 cut(s)	101, 234
BmiI	GGNNCC	1 cut(s)	103
BmrFI	CCNGG	1 cut(s)	300
Bpu10I	CCTNAGC	2 cut(s)	157, 244
BpuMI	CCSGG	1 cut(s)	300
Bsa29I	ATCGAT	1 cut(s)	44
BsaJI	CCNNGG	1 cut(s)	53
Bsc4I	CCNNNNNNNGG	3 cut(s)	27, 94, 319
Bse118I	RCCGGY	1 cut(s)	98
Bse1I	ACTGG	1 cut(s)	260
BseCI	ATCGAT	1 cut(s)	44
BseDI	CCNNGG	1 cut(s)	53
BseLI	CCNNNNNNNGG	3 cut(s)	27, 94, 319
BseMII	CTCAG	2 cut(s)	171, 258
BseNI	ACTGG	1 cut(s)	260
BseRI	GAGGAG	1 cut(s)	98
BseX3I	CGGCCG	1 cut(s)	96
BseXI	GCAGC	1 cut(s)	162
BsgI	GTGCAG	2 cut(s)	97, 196
Bsh1285I	CGRYCG	1 cut(s)	99
BshFI	GGCC	3 cut(s)	65, 98, 235
BshVI	ATCGAT	1 cut(s)	44
BsiEI	CGRYCG	1 cut(s)	99
BsiSI	CCGG	2 cut(s)	99, 299
BslFI	GGGAC	1 cut(s)	87
BslI	CCNNNNNNNGG	3 cut(s)	27, 94, 319
BsmAI	GTCTC	1 cut(s)	85
BsmFI	GGGAC	1 cut(s)	87
BsnI	GGCC	3 cut(s)	65, 98, 235
Bsp143I	GATC	5 cut(s)	45, 119, 162, 180, 193
BspACI	CCGC	1 cut(s)	221
BspANI	GGCC	3 cut(s)	65, 98, 235
BspCNI	CTCAG	2 cut(s)	170, 257
BspDI	ATCGAT	1 cut(s)	44
BspLI	GGNNCC	1 cut(s)	103
BspMAI	CTGCAG	1 cut(s)	180
BspPI	GGATC	2 cut(s)	40, 114
BsrFI	RCCGGY	1 cut(s)	98
BsrI	ACTGG	1 cut(s)	260
BssAI	RCCGGY	1 cut(s)	98
BssECI	CCNNGG	1 cut(s)	53
BssMI	GATC	5 cut(s)	45, 119, 162, 180, 193
BssT1I	CCWWGG	1 cut(s)	53
Bst4CI	ACNGT	1 cut(s)	217
Bst6I	CTCTTC	1 cut(s)	134
BstDEI	CTNAG	3 cut(s)	76, 157, 244
BstENI	CCTNNNNNAGG	1 cut(s)	25
BstKTI	GATC	5 cut(s)	48, 122, 165, 183, 196
BstMAI	GTCTC	1 cut(s)	85
BstMBI	GATC	5 cut(s)	45, 119, 162, 180, 193
BstMCI	CGRYCG	1 cut(s)	99
BstSCI	CCNGG	1 cut(s)	298
BstSFI	CTRYAG	1 cut(s)	176
BstV1I	GCAGC	1 cut(s)	162
BstX2I	RGATCY	1 cut(s)	180
BstYI	RGATCY	1 cut(s)	180
BstZI	CGGCCG	1 cut(s)	96
Bsu15I	ATCGAT	1 cut(s)	44
BsuRI	GGCC	3 cut(s)	65, 98, 235
BsuTUI	ATCGAT	1 cut(s)	44
Cfr10I	RCCGGY	1 cut(s)	98
Cfr13I	GGNCC	2 cut(s)	101, 234
ClaI	ATCGAT	1 cut(s)	44
Csp6I	GTAC	2 cut(s)	289, 303
CviAII	CATG	1 cut(s)	191
CviJI	RGCY	6 cut(s)	65, 98, 235, 248, 270, 298
CviKI_1	RGCY	6 cut(s)	65, 98, 235, 248, 270, 298
CviQI	GTAC	2 cut(s)	289, 303
DdeI	CTNAG	3 cut(s)	76, 157, 244
DpnI	GATC	5 cut(s)	47, 121, 164, 182, 195
DpnII	GATC	5 cut(s)	45, 119, 162, 180, 193
EaeI	YGGCCR	1 cut(s)	96
EagI	CGGCCG	1 cut(s)	96
Eam1104I	CTCTTC	1 cut(s)	134
EarI	CTCTTC	1 cut(s)	134
EclXI	CGGCCG	1 cut(s)	96
Eco130I	CCWWGG	1 cut(s)	53
Eco47I	GGWCC	1 cut(s)	101
Eco52I	CGGCCG	1 cut(s)	96
Eco57I	CTGAAG	1 cut(s)	121
EcoNI	CCTNNNNNAGG	1 cut(s)	25
EcoT14I	CCWWGG	1 cut(s)	53
EcoT22I	ATGCAT	1 cut(s)	329
ErhI	CCWWGG	1 cut(s)	53
FaeI	CATG	1 cut(s)	194
FaiI	YATR	3 cut(s)	192, 325, 329
FaqI	GGGAC	1 cut(s)	87
FatI	CATG	1 cut(s)	190
Fnu4HI	GCNGC	2 cut(s)	176, 222
Fsp4HI	GCNGC	2 cut(s)	176, 222
FspBI	CTAG	1 cut(s)	340
GluI	GCNGC	2 cut(s)	176, 222
HaeIII	GGCC	3 cut(s)	65, 98, 235
HapII	CCGG	2 cut(s)	99, 299
Hin1II	CATG	1 cut(s)	194
HinfI	GANTC	1 cut(s)	147
HpaII	CCGG	2 cut(s)	99, 299
HphI	GGTGA	2 cut(s)	75, 134
Hpy166II	GTNNAC	1 cut(s)	12
Hpy188I	TCNGA	1 cut(s)	169
Hpy8I	GTNNAC	1 cut(s)	12
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	2 cut(s)	145, 260
HpyCH4III	ACNGT	1 cut(s)	217
HpyCH4IV	ACGT	2 cut(s)	17, 291
HpyCH4V	TGCA	7 cut(s)	114, 178, 190, 213, 283, 310, 327
HpyF3I	CTNAG	3 cut(s)	76, 157, 244
HpySE526I	ACGT	2 cut(s)	17, 291
Hsp92II	CATG	1 cut(s)	194
Kzo9I	GATC	5 cut(s)	45, 119, 162, 180, 193
LpnPI	CCDG	5 cut(s)	112, 182, 241, 269, 312
Lsp1109I	GCAGC	1 cut(s)	162
MaeI	CTAG	1 cut(s)	340
MaeII	ACGT	2 cut(s)	17, 291
MaeIII	GTNAC	1 cut(s)	140
MalI	GATC	5 cut(s)	47, 121, 164, 182, 195
MboI	GATC	5 cut(s)	45, 119, 162, 180, 193
MboII	GAAGA	1 cut(s)	121
MflI	RGATCY	1 cut(s)	180
MlyI	GAGTC	1 cut(s)	156
Mph1103I	ATGCAT	1 cut(s)	329
MspI	CCGG	2 cut(s)	99, 299
MspR9I	CCNGG	1 cut(s)	300
NciI	CCSGG	1 cut(s)	300
NdeII	GATC	5 cut(s)	45, 119, 162, 180, 193
NlaIII	CATG	1 cut(s)	194
NlaIV	GGNNCC	1 cut(s)	103
NmeAIII	GCCGAG	1 cut(s)	74
NmuCI	GTSAC	1 cut(s)	140
NsiI	ATGCAT	1 cut(s)	329
PcsI	WCGNNNNNNNCGW	1 cut(s)	14
PflFI	GACNNNGTC	1 cut(s)	16
PkrI	GCNGC	2 cut(s)	177, 223
PleI	GAGTC	1 cut(s)	155
PpsI	GAGTC	1 cut(s)	155
PspN4I	GGNNCC	1 cut(s)	103
PspPI	GGNCC	2 cut(s)	101, 234
PstI	CTGCAG	1 cut(s)	180
PsuI	RGATCY	1 cut(s)	180
PsyI	GACNNNGTC	1 cut(s)	16
RsaI	GTAC	2 cut(s)	290, 304
RsaNI	GTAC	2 cut(s)	289, 303
SatI	GCNGC	2 cut(s)	176, 222
Sau3AI	GATC	5 cut(s)	45, 119, 162, 180, 193
Sau96I	GGNCC	2 cut(s)	101, 234
SchI	GAGTC	1 cut(s)	156
ScrFI	CCNGG	1 cut(s)	300
SetI	ASST	8 cut(s)	20, 32, 59, 73, 93, 245, 250, 294
SfcI	CTRYAG	1 cut(s)	176
SinI	GGWCC	1 cut(s)	101
SsiI	CCGC	1 cut(s)	221
SspMI	CTAG	1 cut(s)	340
StyD4I	CCNGG	1 cut(s)	298
StyI	CCWWGG	1 cut(s)	53
TaaI	ACNGT	1 cut(s)	217
TaiI	ACGT	2 cut(s)	20, 294
TaqI	TCGA	2 cut(s)	44, 252
TaqII	GACCGA	1 cut(s)	325
TauI	GCSGC	1 cut(s)	224
TseFI	GTSAC	1 cut(s)	140
TseI	GCWGC	1 cut(s)	175
Tsp45I	GTSAC	1 cut(s)	140
TspGWI	ACGGA	1 cut(s)	175
Tth111I	GACNNNGTC	1 cut(s)	16
VpaK11BI	GGWCC	1 cut(s)	101
XagI	CCTNNNNNAGG	1 cut(s)	25
XspI	CTAG	1 cut(s)	340
Zsp2I	ATGCAT	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.