Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0005250

Physical Location & Seq

Genomic Coordinates Reverse (-)

51531193 .. 51531399

Gene Structure 207 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG328700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 207 bp

ATGTCGTCATTCCCCGTCGTCGAGCACATCGTCCTCTTCAAGGTCAAAGACAACACCAATCCCTCCACGGTCAACGGCCTCACCTCCCTCGGTCTCACCCCACCTCTCCACCGGTCCCCTCCTCTACACCCGATCCACCCTCTTCACCTTCAGTCACCGAGTCAACGCCTCAGCGATCTCCGAGTCACTGTGGATCTCCATGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009753 GO:0009814 GO:0009817 GO:0010033 GO:0042221 GO:0042579 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Dabb

Protein Analysis

68

Amino Acids

7.49

Weight (kDa)

8.45

Isoelectric Point (pI)

64.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005250)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10810 AT4G24026
fragaria_vesca	FvH4_5g11470
malus_domestica	MD06G1113400.v1.1 MD14G1134500.v1.1
prunus_persica	Prupe.5G126200_v2.0.a1
pyrus_communis	pycom06g10600
rosa_chinensis	RchiOBHm_Chr7g0186341
rosa_laevigata	RLG00000002143 RLG00000011413 RLG00000018050 RLG00000022479 RLG00000023922
rosa_multiflora	Rmu_sc0000645.1_g000049
rosa_roxburghii	Rroxscaffold_3G00236320 Rroxscaffold_6G00405670
rosa_rugosa	Rorug06G0473600
rosa_samantha	Rh1AG244700 Rh1BG185600 Rh1CG228500 Rh1DG011600 Rh1DG169800 Rh1DG215300 Rh2AG461800 Rh2CG448800 Rh6AG315700 Rh6BG340900 Rh6CG328700
rosa_wichuraiana	Rw7G006740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	127, 201
AcuI	CTGAAG	1 cut(s)	134
AfiI	CCNNNNNNNGG	1 cut(s)	40
AgeI	ACCGGT	1 cut(s)	111
AgsI	TTSAA	1 cut(s)	40
Alw21I	GWGCWC	1 cut(s)	27
Alw26I	GTCTC	1 cut(s)	98
AlwI	GGATC	2 cut(s)	127, 201
AoxI	GGCC	1 cut(s)	76
AsiGI	ACCGGT	1 cut(s)	111
AspS9I	GGNCC	1 cut(s)	114
AsuHPI	GGTGA	4 cut(s)	73, 88, 137, 147
AvaII	GGWCC	1 cut(s)	114
Bbv12I	GWGCWC	1 cut(s)	27
BbvCI	CCTCAGC	1 cut(s)	170
BceAI	ACGGC	1 cut(s)	91
BcoDI	GTCTC	1 cut(s)	98
Bme18I	GGWCC	1 cut(s)	114
BmgT120I	GGNCC	1 cut(s)	114
BmiI	GGNNCC	1 cut(s)	116
Bpu10I	CCTNAGC	1 cut(s)	170
BsaI	GGTCTC	1 cut(s)	98
BsaJI	CCNNGG	2 cut(s)	66, 88
BsaWI	WCCGGW	1 cut(s)	111
Bsc4I	CCNNNNNNNGG	1 cut(s)	40
Bse118I	RCCGGY	1 cut(s)	111
BseDI	CCNNGG	2 cut(s)	66, 88
BseLI	CCNNNNNNNGG	1 cut(s)	40
BseMII	CTCAG	1 cut(s)	184
BseRI	GAGGAG	1 cut(s)	111
BshFI	GGCC	1 cut(s)	78
BshTI	ACCGGT	1 cut(s)	111
BsiHKAI	GWGCWC	1 cut(s)	27
BsiSI	CCGG	1 cut(s)	112
BslFI	GGGAC	1 cut(s)	100
BslI	CCNNNNNNNGG	1 cut(s)	40
BsmAI	GTCTC	1 cut(s)	98
BsmFI	GGGAC	1 cut(s)	100
BsnI	GGCC	1 cut(s)	78
Bso31I	GGTCTC	1 cut(s)	98
Bsp1286I	GDGCHC	1 cut(s)	27
Bsp143I	GATC	3 cut(s)	132, 175, 193
BspANI	GGCC	1 cut(s)	78
BspCNI	CTCAG	1 cut(s)	183
BspLI	GGNNCC	1 cut(s)	116
BspPI	GGATC	2 cut(s)	127, 201
BspTNI	GGTCTC	1 cut(s)	98
BsrFI	RCCGGY	1 cut(s)	111
BssAI	RCCGGY	1 cut(s)	111
BssECI	CCNNGG	2 cut(s)	66, 88
BssMI	GATC	3 cut(s)	132, 175, 193
Bst4CI	ACNGT	2 cut(s)	70, 190
Bst6I	CTCTTC	2 cut(s)	41, 147
BstDEI	CTNAG	1 cut(s)	170
BstDSI	CCRYGG	1 cut(s)	66
BstENI	CCTNNNNNAGG	1 cut(s)	38
BstKTI	GATC	3 cut(s)	135, 178, 196
BstMAI	GTCTC	1 cut(s)	98
BstMBI	GATC	3 cut(s)	132, 175, 193
BstX2I	RGATCY	1 cut(s)	193
BstYI	RGATCY	1 cut(s)	193
BsuRI	GGCC	1 cut(s)	78
BtgI	CCRYGG	1 cut(s)	66
BtsIMutI	CAGTG	1 cut(s)	186
Cfr10I	RCCGGY	1 cut(s)	111
Cfr13I	GGNCC	1 cut(s)	114
CspAI	ACCGGT	1 cut(s)	111
CviAII	CATG	2 cut(s)	200, 204
CviJI	RGCY	1 cut(s)	78
CviKI_1	RGCY	1 cut(s)	78
DdeI	CTNAG	1 cut(s)	170
DpnI	GATC	3 cut(s)	134, 177, 195
DpnII	GATC	3 cut(s)	132, 175, 193
Eam1104I	CTCTTC	2 cut(s)	41, 147
EarI	CTCTTC	2 cut(s)	41, 147
Eco31I	GGTCTC	1 cut(s)	98
Eco47I	GGWCC	1 cut(s)	114
Eco57I	CTGAAG	1 cut(s)	134
EcoNI	CCTNNNNNAGG	1 cut(s)	38
EcoT22I	ATGCAT	1 cut(s)	205
FaeI	CATG	2 cut(s)	203, 207
FaiI	YATR	2 cut(s)	201, 205
FaqI	GGGAC	1 cut(s)	100
FatI	CATG	2 cut(s)	199, 203
HaeIII	GGCC	1 cut(s)	78
HapII	CCGG	1 cut(s)	112
Hin1II	CATG	2 cut(s)	203, 207
HincII	GTYRAC	2 cut(s)	73, 164
HindII	GTYRAC	2 cut(s)	73, 164
HinfI	GANTC	2 cut(s)	160, 183
HpaII	CCGG	1 cut(s)	112
HphI	GGTGA	4 cut(s)	73, 88, 137, 147
Hpy166II	GTNNAC	2 cut(s)	73, 164
Hpy188I	TCNGA	1 cut(s)	182
Hpy8I	GTNNAC	2 cut(s)	73, 164
Hpy99I	CGWCG	2 cut(s)	20, 23
HpyAV	CCTTC	1 cut(s)	158
HpyCH4III	ACNGT	2 cut(s)	70, 190
HpyCH4V	TGCA	1 cut(s)	203
HpyF3I	CTNAG	1 cut(s)	170
Hsp92II	CATG	2 cut(s)	203, 207
Kzo9I	GATC	3 cut(s)	132, 175, 193
LpnPI	CCDG	1 cut(s)	125
MaeIII	GTNAC	2 cut(s)	153, 184
MalI	GATC	3 cut(s)	134, 177, 195
MboI	GATC	3 cut(s)	132, 175, 193
MboII	GAAGA	2 cut(s)	28, 134
MflI	RGATCY	1 cut(s)	193
MhlI	GDGCHC	1 cut(s)	27
MlyI	GAGTC	2 cut(s)	169, 192
Mph1103I	ATGCAT	1 cut(s)	205
MspI	CCGG	1 cut(s)	112
NdeII	GATC	3 cut(s)	132, 175, 193
NlaIII	CATG	2 cut(s)	203, 207
NlaIV	GGNNCC	1 cut(s)	116
NmuCI	GTSAC	2 cut(s)	153, 184
NsiI	ATGCAT	1 cut(s)	205
PcsI	WCGNNNNNNNCGW	1 cut(s)	27
PinAI	ACCGGT	1 cut(s)	111
PleI	GAGTC	2 cut(s)	168, 191
PpsI	GAGTC	2 cut(s)	168, 191
PspN4I	GGNNCC	1 cut(s)	116
PspPI	GGNCC	1 cut(s)	114
PsuI	RGATCY	1 cut(s)	193
Sau3AI	GATC	3 cut(s)	132, 175, 193
Sau96I	GGNCC	1 cut(s)	114
SchI	GAGTC	2 cut(s)	169, 192
SduI	GDGCHC	1 cut(s)	27
SetI	ASST	4 cut(s)	45, 86, 106, 150
SgeI	CNNG	9 cut(s)	26, 34, 52, 79, 101, 124, 142, 171, 194
SinI	GGWCC	1 cut(s)	114
TaaI	ACNGT	2 cut(s)	70, 190
TaqI	TCGA	1 cut(s)	21
TaqII	GACCGA	1 cut(s)	80
TscAI	CASTG	1 cut(s)	193
TseFI	GTSAC	2 cut(s)	153, 184
Tsp45I	GTSAC	2 cut(s)	153, 184
TspRI	CASTG	1 cut(s)	193
VpaK11BI	GGWCC	1 cut(s)	114
XagI	CCTNNNNNAGG	1 cut(s)	38
Zsp2I	ATGCAT	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.