RLG00000018050

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0005250
Physical Location & Seq
Reverse (-)
24839553 .. 24840170
618 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018050

Sequence Viewer

Length: 333 bp
ATGTCGTCATTCCCCGTCGTCGAGCACATCGTCCTCTTCAAGGTCAAAGACAACACCAATCCCTCCAAGGTCAACGGCCTCACCTCCCTCGGTCTCACTCCGCCGGTCCCCTCCTCTGCACCCGATCCACTCTCTTCACCTTCAGTCAGCGCCACCGTCTCCTCCGCCTTCTTCTCTTCCCTCAAGCGCTTCTCCTGCATCAACGTCGCCACCACGGACACCGACGAGGACGACGAGGCCGCCCACCGGCCTCTCGCTTTCACCAATCTCACCCGCTCCAATCAACAGCACCACCACGCAAACGCAAACAACGTCGCTCAGTTCCCAGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

11.76

Weight (kDa)

6.15

Isoelectric Point (pI)

50.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 276
AciI CCGC 4 cut(s) 101, 165, 240, 274
AclWI GGATC 1 cut(s) 119
AcuI CTGAAG 1 cut(s) 126
AfeI AGCGCT 1 cut(s) 188
AfiI CCNNNNNNNGG 2 cut(s) 40, 246
AgsI TTSAA 1 cut(s) 40
Alw21I GWGCWC 1 cut(s) 27
Alw26I GTCTC 2 cut(s) 98, 163
AlwI GGATC 1 cut(s) 119
Aor51HI AGCGCT 1 cut(s) 188
AoxI GGCC 3 cut(s) 76, 237, 248
AspLEI GCGC 2 cut(s) 152, 189
AspS9I GGNCC 1 cut(s) 106
AsuHPI GGTGA 4 cut(s) 73, 129, 253, 262
AvaII GGWCC 1 cut(s) 106
Bbv12I GWGCWC 1 cut(s) 27
BceAI ACGGC 1 cut(s) 91
BcgI CGANNNNNNTGC 2 cut(s) 187, 221
BcoDI GTCTC 2 cut(s) 98, 163
BfoI RGCGCY 2 cut(s) 153, 190
BisI GCNGC 1 cut(s) 240
BlsI GCNGC 1 cut(s) 241
Bme18I GGWCC 1 cut(s) 106
BmgT120I GGNCC 1 cut(s) 106
BmiI GGNNCC 1 cut(s) 108
BmrI ACTGGG 1 cut(s) 320
BmsI GCATC 1 cut(s) 207
BmuI ACTGGG 1 cut(s) 320
BpuEI CTTGAG 1 cut(s) 167
BsaI GGTCTC 1 cut(s) 98
BsaJI CCNNGG 3 cut(s) 66, 88, 213
Bsc4I CCNNNNNNNGG 2 cut(s) 40, 246
Bse118I RCCGGY 2 cut(s) 103, 246
Bse1I ACTGG 1 cut(s) 326
BseDI CCNNGG 3 cut(s) 66, 88, 213
BseLI CCNNNNNNNGG 2 cut(s) 40, 246
BseMII CTCAG 1 cut(s) 332
BseNI ACTGG 1 cut(s) 326
BseRI GAGGAG 2 cut(s) 103, 151
BsgI GTGCAG 1 cut(s) 102
BshFI GGCC 3 cut(s) 78, 239, 250
BsiHKAI GWGCWC 1 cut(s) 27
BsiSI CCGG 2 cut(s) 104, 247
BslFI GGGAC 1 cut(s) 92
BslI CCNNNNNNNGG 2 cut(s) 40, 246
BsmAI GTCTC 2 cut(s) 98, 163
BsmBI CGTCTC 1 cut(s) 163
BsmFI GGGAC 1 cut(s) 92
BsnI GGCC 3 cut(s) 78, 239, 250
Bso31I GGTCTC 1 cut(s) 98
Bsp1286I GDGCHC 1 cut(s) 27
Bsp143I GATC 1 cut(s) 124
BspACI CCGC 4 cut(s) 101, 165, 240, 274
BspANI GGCC 3 cut(s) 78, 239, 250
BspCNI CTCAG 1 cut(s) 331
BspLI GGNNCC 1 cut(s) 108
BspPI GGATC 1 cut(s) 119
BspTNI GGTCTC 1 cut(s) 98
BsrBI CCGCTC 1 cut(s) 276
BsrFI RCCGGY 2 cut(s) 103, 246
BsrI ACTGG 1 cut(s) 326
BssAI RCCGGY 2 cut(s) 103, 246
BssECI CCNNGG 3 cut(s) 66, 88, 213
BssMI GATC 1 cut(s) 124
BssT1I CCWWGG 1 cut(s) 66
Bst4CI ACNGT 1 cut(s) 157
Bst6I CTCTTC 3 cut(s) 41, 139, 181
BstDEI CTNAG 1 cut(s) 318
BstDSI CCRYGG 1 cut(s) 213
BstENI CCTNNNNNAGG 1 cut(s) 38
BstH2I RGCGCY 2 cut(s) 153, 190
BstHHI GCGC 2 cut(s) 152, 189
BstKTI GATC 1 cut(s) 127
BstMAI GTCTC 2 cut(s) 98, 163
BstMBI GATC 1 cut(s) 124
BstMWI GCNNNNNNNGC 1 cut(s) 195
BsuRI GGCC 3 cut(s) 78, 239, 250
BtgI CCRYGG 1 cut(s) 213
CfoI GCGC 2 cut(s) 152, 189
Cfr10I RCCGGY 2 cut(s) 103, 246
Cfr13I GGNCC 1 cut(s) 106
CviJI RGCY 3 cut(s) 78, 239, 250
CviKI_1 RGCY 3 cut(s) 78, 239, 250
DdeI CTNAG 1 cut(s) 318
DpnI GATC 1 cut(s) 126
DpnII GATC 1 cut(s) 124
Eam1104I CTCTTC 3 cut(s) 41, 139, 181
EarI CTCTTC 3 cut(s) 41, 139, 181
EciI GGCGGA 2 cut(s) 90, 154
Eco130I CCWWGG 1 cut(s) 66
Eco31I GGTCTC 1 cut(s) 98
Eco47I GGWCC 1 cut(s) 106
Eco47III AGCGCT 1 cut(s) 188
Eco57I CTGAAG 1 cut(s) 126
EcoNI CCTNNNNNAGG 1 cut(s) 38
EcoT14I CCWWGG 1 cut(s) 66
ErhI CCWWGG 1 cut(s) 66
Esp3I CGTCTC 1 cut(s) 163
FaqI GGGAC 1 cut(s) 92
FauI CCCGC 1 cut(s) 281
Fnu4HI GCNGC 1 cut(s) 240
Fsp4HI GCNGC 1 cut(s) 240
GlaI GCGC 2 cut(s) 151, 188
GluI GCNGC 1 cut(s) 240
HaeII RGCGCY 2 cut(s) 153, 190
HaeIII GGCC 3 cut(s) 78, 239, 250
HapII CCGG 2 cut(s) 104, 247
HhaI GCGC 2 cut(s) 152, 189
Hin6I GCGC 2 cut(s) 150, 187
HinP1I GCGC 2 cut(s) 150, 187
HincII GTYRAC 1 cut(s) 73
HindII GTYRAC 1 cut(s) 73
HpaII CCGG 2 cut(s) 104, 247
HphI GGTGA 4 cut(s) 73, 129, 253, 262
Hpy166II GTNNAC 1 cut(s) 73
Hpy188I TCNGA 1 cut(s) 332
Hpy8I GTNNAC 1 cut(s) 73
Hpy99I CGWCG 6 cut(s) 20, 23, 209, 227, 236, 317
HpyAV CCTTC 2 cut(s) 150, 178
HpyCH4III ACNGT 1 cut(s) 157
HpyCH4IV ACGT 2 cut(s) 204, 312
HpyCH4V TGCA 2 cut(s) 119, 198
HpyF10VI GCNNNNNNNGC 1 cut(s) 195
HpyF3I CTNAG 1 cut(s) 318
HpySE526I ACGT 2 cut(s) 204, 312
HspAI GCGC 2 cut(s) 150, 187
Kzo9I GATC 1 cut(s) 124
LmnI GCTCC 1 cut(s) 281
LpnPI CCDG 3 cut(s) 117, 208, 260
LweI GCATC 1 cut(s) 207
MaeII ACGT 2 cut(s) 204, 312
MalI GATC 1 cut(s) 126
MbiI CCGCTC 1 cut(s) 276
MboI GATC 1 cut(s) 124
MboII GAAGA 4 cut(s) 28, 126, 163, 168
MhlI GDGCHC 1 cut(s) 27
MspI CCGG 2 cut(s) 104, 247
MwoI GCNNNNNNNGC 1 cut(s) 195
NdeII GATC 1 cut(s) 124
NlaIV GGNNCC 1 cut(s) 108
PcsI WCGNNNNNNNCGW 3 cut(s) 27, 231, 309
PkrI GCNGC 1 cut(s) 241
PspN4I GGNNCC 1 cut(s) 108
PspPI GGNCC 1 cut(s) 106
SatI GCNGC 1 cut(s) 240
Sau3AI GATC 1 cut(s) 124
Sau96I GGNCC 1 cut(s) 106
SduI GDGCHC 1 cut(s) 27
SetI ASST 6 cut(s) 45, 72, 86, 142, 207, 315
SfaNI GCATC 1 cut(s) 207
SinI GGWCC 1 cut(s) 106
SmlI CTYRAG 1 cut(s) 182
SmoI CTYRAG 1 cut(s) 182
SsiI CCGC 4 cut(s) 101, 165, 240, 274
StyI CCWWGG 1 cut(s) 66
TaaI ACNGT 1 cut(s) 157
TaiI ACGT 2 cut(s) 207, 315
TaqI TCGA 1 cut(s) 21
TaqII GACCGA 1 cut(s) 80
TauI GCSGC 1 cut(s) 242
TspGWI ACGGA 1 cut(s) 230
VpaK11BI GGWCC 1 cut(s) 106
XagI CCTNNNNNAGG 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.