Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002680

Physical Location & Seq

Genomic Coordinates Reverse (-)

8271270 .. 8273903

Gene Structure 2634 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G14365.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGGGGCAACAACAATCACAGTCCAAGGATGAGATGCTGTTTCAAGAAGTGAGTAACAACAACGTCGAAGGTATCAAATCACTTCACCATGAAGGAGCAGGACTCGAGGGGGTGGATAAATTAGGGAGAACACCATTAATCTTAGCTTGTACGAACGACGATCTATATGATGTAGCAAAAACTCTGCTTGAGTTGGGCTCCAATGTCAATGCTTATCGTTCTGGTTGCAATGGTGGGACTCCTCTGCACCATGCTGCAAAAAGAGGTCTCGTACACACGGTTAAGTTACTTCTGTCTCACGGTGCAAATCCATTGGTTCTTGATGATGATGTTAAGACAGCTCTCGAGGTTGCTAGAGATGAAGGTTACAGTAATGTCGTACGCGCAATCGAGAGTCATATCTGCTTGTTCTCTGGTTGTATGCGTGAGTATTCTGGCTCCAGCTTGCTTAATTTATTTGCTCCTCAGCTTCTTTCAAGAAAAGTATGGGTAGTTGTCGTACCAACTGGTTCAAGAAACCCTACAAAGCCTTTAAAGTTGGAGTTGGTTCTGTATGATAGTATTCAGGATGCACAACCAAGAATGGTGATACCTTTGTGGAAAGCAAACTTAGAGGAACCAAAATCATTTCGGTGTGATGATTCAGTGATGATTATTGATGACTCCAGAAGTCCAAAGTCCATGAGGCAGAGAAGAGAAAGCGGATTCATTTCTCAGGCGAGGCGTTGGGCTCAAGTCGATAGACAAATACGTCTTAAGCTAGCAGCTGAGATCAAAGGCGACATGAAACAGATGAATTGGTTTTCTGAGGCATGTAAAGGAGTTCCACAGCCAATGAATCCTCCAAGGTTTATGAAAACATCTCAAGCAACAACAACAACAACCAATGTTCCTGCACTAAGTGATGATGCTTTGACTCGTGTCGCCATGTCACTTCCTTCTCCAAAAACTGCGAATAAAGAAGATGGACTGTGTGTGATTTGTGTGGATGCACCATCTGAAGCAGTGTGTGTGCCGTGTGGACATGTCGCCGGATGCATTTCTTGCTTGAAAGAGATTGAAAACAAGAAAATGGGATGTCCTGTTTGTCGCGCCAACATTGATCAGGTCATTAAGCTATATCATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_4 zf-C3HC4_3

Protein Analysis

376

Amino Acids

41.38

Weight (kDa)

8.15

Isoelectric Point (pI)

50.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_5	PF13857	62 - 118	1e-05	Ankyrin repeats (many copies)
Ank_2	PF12796	69 - 129	1.9e-08	Ankyrin repeats (3 copies)
Ank	PF00023	77 - 108	1.5e-07	Ankyrin repeat
zf-C3HC4_3	PF13920	322 - 370	1.5e-13	Zinc finger, C3HC4 type (RING finger)
Prok-RING_4	PF14447	325 - 369	6.6e-06	Prokaryotic RING finger family 4

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002680)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23280 AT3G23280 AT4G14365
fragaria_vesca	FvH4_4g03720 FvH4_4g03720 FvH4_4g03730
malus_domestica	MD05G1075400.v1.1 MD13G1214800.v1.1 MD16G1219900.v1.1
prunus_persica	Prupe.1G040200_v2.0.a1 Prupe.1G040200_v2.0.a1
pyrus_communis	pycom13g18820 pycom16g18320
rosa_chinensis	RchiOBHm_Chr4g0393331 RchiOBHm_Chr4g0393371
rosa_laevigata	RLG00000009750 RLG00000009758 RLG00000009759 RLG00000009763
rosa_multiflora	Rmu_sc0008931.1_g000009
rosa_roxburghii	Rroxscaffold_3G00224380 Rroxscaffold_5G00338320 Rroxscaffold_5G00338340 Rroxscaffold_5G00338360 Rroxscaffold_5G00338390
rosa_rugosa	Rorug04G0001300 Rorug04G0001500 Rorug04G0001800
rosa_samantha	Rh4AG046800 Rh4AG047000 Rh4AG047300 Rh4AG047400 Rh4BG042400 Rh4BG042600 Rh4CG049900 Rh4CG050000 Rh4DG044200 Rh5AG327600
rosa_wichuraiana	Rw4G003700 Rw4G003720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	750
AccII	CGCG	2 cut(s)	384, 1092
AciI	CCGC	1 cut(s)	702
AcuI	CTGAAG	1 cut(s)	1020
AdeI	CACNNNGTG	1 cut(s)	902
AfaI	GTAC	4 cut(s)	151, 273, 381, 501
AflII	CTTAAG	1 cut(s)	755
AflIII	ACRYGT	1 cut(s)	1024
AgsI	TTSAA	5 cut(s)	44, 477, 513, 1051, 1061
AluBI	AGCT	7 cut(s)	146, 341, 444, 469, 760, 767, 1117
AluI	AGCT	7 cut(s)	146, 341, 444, 469, 760, 767, 1117
Alw26I	GTCTC	2 cut(s)	272, 300
Ama87I	CYCGRG	2 cut(s)	104, 344
ApeKI	GCWGC	2 cut(s)	254, 764
AseI	ATTAAT	1 cut(s)	137
AspLEI	GCGC	2 cut(s)	386, 1094
AsuHPI	GGTGA	2 cut(s)	77, 598
AsuNHI	GCTAGC	1 cut(s)	760
AvaI	CYCGRG	2 cut(s)	104, 344
BaeI	ACNNNNGTAYC	2 cut(s)	581, 614
BanII	GRGCYC	2 cut(s)	200, 733
BauI	CACGAG	1 cut(s)	918
BbvCI	CCTCAGC	1 cut(s)	465
BbvI	GCAGC	2 cut(s)	241, 776
BccI	CCATC	2 cut(s)	959, 1003
BceAI	ACGGC	1 cut(s)	1000
BclI	TGATCA	1 cut(s)	1102
BcoDI	GTCTC	2 cut(s)	272, 300
BfaI	CTAG	2 cut(s)	354, 761
BfrI	CTTAAG	1 cut(s)	755
BisI	GCNGC	2 cut(s)	255, 765
BlsI	GCNGC	2 cut(s)	256, 766
BmeT110I	CYCGRG	2 cut(s)	104, 344
BmiI	GGNNCC	3 cut(s)	199, 439, 618
BmsI	GCATC	5 cut(s)	24, 559, 898, 979, 1025
BmtI	GCTAGC	1 cut(s)	764
BoxI	GACNNNNGTC	1 cut(s)	920
BplI	GAGNNNNNCTC	4 cut(s)	87, 119, 182, 214
BpmI	CTGGAG	2 cut(s)	424, 649
Bpu10I	CCTNAGC	1 cut(s)	465
BpuEI	CTTGAG	3 cut(s)	209, 717, 849
BsaI	GGTCTC	1 cut(s)	272
BsaJI	CCNNGG	2 cut(s)	24, 845
Bse1I	ACTGG	1 cut(s)	511
Bse3DI	GCAATG	1 cut(s)	235
BseDI	CCNNGG	2 cut(s)	24, 845
BseGI	GGATG	5 cut(s)	34, 574, 994, 1040, 1082
BseMI	GCAATG	1 cut(s)	235
BseMII	CTCAG	4 cut(s)	479, 728, 759, 798
BseNI	ACTGG	1 cut(s)	511
BseRI	GAGGAG	2 cut(s)	231, 453
BseXI	GCAGC	2 cut(s)	241, 776
BsgI	GTGCAG	2 cut(s)	230, 879
Bsh1236I	CGCG	2 cut(s)	384, 1092
BsiHKCI	CYCGRG	2 cut(s)	104, 344
BsiSI	CCGG	1 cut(s)	1032
BsiWI	CGTACG	1 cut(s)	379
BslFI	GGGAC	1 cut(s)	250
BsmAI	GTCTC	2 cut(s)	272, 300
BsmFI	GGGAC	1 cut(s)	250
Bso31I	GGTCTC	1 cut(s)	272
BsoBI	CYCGRG	2 cut(s)	104, 344
Bsp1286I	GDGCHC	2 cut(s)	200, 733
Bsp143I	GATC	3 cut(s)	160, 771, 1102
BspACI	CCGC	1 cut(s)	702
BspCNI	CTCAG	4 cut(s)	478, 727, 760, 799
BspFNI	CGCG	2 cut(s)	384, 1092
BspLI	GGNNCC	3 cut(s)	199, 439, 618
BspOI	GCTAGC	1 cut(s)	764
BspTI	CTTAAG	1 cut(s)	755
BspTNI	GGTCTC	1 cut(s)	272
BsrDI	GCAATG	1 cut(s)	235
BsrI	ACTGG	1 cut(s)	511
BssECI	CCNNGG	2 cut(s)	24, 845
BssMI	GATC	3 cut(s)	160, 771, 1102
BssSI	CACGAG	1 cut(s)	918
BssT1I	CCWWGG	2 cut(s)	24, 845
Bst2BI	CACGAG	1 cut(s)	918
Bst4CI	ACNGT	5 cut(s)	21, 280, 302, 371, 972
Bst6I	CTCTTC	1 cut(s)	688
BstAFI	CTTAAG	1 cut(s)	755
BstAPI	GCANNNNNTGC	1 cut(s)	1044
BstC8I	GCNNGC	2 cut(s)	446, 762
BstDEI	CTNAG	7 cut(s)	142, 465, 610, 714, 768, 807, 899
BstF5I	GGATG	5 cut(s)	34, 574, 994, 1040, 1082
BstFNI	CGCG	2 cut(s)	384, 1092
BstHHI	GCGC	2 cut(s)	386, 1094
BstKTI	GATC	3 cut(s)	163, 774, 1105
BstMAI	GTCTC	2 cut(s)	272, 300
BstMBI	GATC	3 cut(s)	160, 771, 1102
BstMWI	GCNNNNNNNGC	1 cut(s)	1044
BstNSI	RCATGY	2 cut(s)	816, 1028
BstPAI	GACNNNNGTC	1 cut(s)	920
BstUI	CGCG	2 cut(s)	384, 1092
BstV1I	GCAGC	2 cut(s)	241, 776
BtsCI	GGATG	5 cut(s)	34, 574, 994, 1040, 1082
BtsI	GCAGTG	1 cut(s)	1011
BtsIMutI	CAGTG	2 cut(s)	651, 1011
Cac8I	GCNNGC	2 cut(s)	446, 762
CfoI	GCGC	2 cut(s)	386, 1094
Csp6I	GTAC	4 cut(s)	150, 272, 380, 500
CviAII	CATG	8 cut(s)	89, 251, 682, 784, 813, 928, 1025, 1124
CviQI	GTAC	4 cut(s)	150, 272, 380, 500
DdeI	CTNAG	7 cut(s)	142, 465, 610, 714, 768, 807, 899
DpnI	GATC	3 cut(s)	162, 773, 1104
DpnII	GATC	3 cut(s)	160, 771, 1102
DraI	TTTAAA	1 cut(s)	534
DraIII	CACNNNGTG	1 cut(s)	902
DrdI	GACNNNNNNGTC	1 cut(s)	750
DseDI	GACNNNNNNGTC	1 cut(s)	750
Eam1104I	CTCTTC	1 cut(s)	688
EarI	CTCTTC	1 cut(s)	688
Eco130I	CCWWGG	2 cut(s)	24, 845
Eco24I	GRGCYC	2 cut(s)	200, 733
Eco31I	GGTCTC	1 cut(s)	272
Eco57I	CTGAAG	1 cut(s)	1020
Eco88I	CYCGRG	2 cut(s)	104, 344
EcoT14I	CCWWGG	2 cut(s)	24, 845
EcoT22I	ATGCAT	1 cut(s)	1040
EcoT38I	GRGCYC	2 cut(s)	200, 733
ErhI	CCWWGG	2 cut(s)	24, 845
FaeI	CATG	8 cut(s)	92, 254, 685, 787, 816, 931, 1028, 1127
FaqI	GGGAC	1 cut(s)	250
FatI	CATG	8 cut(s)	88, 250, 681, 783, 812, 927, 1024, 1123
FbaI	TGATCA	1 cut(s)	1102
Fnu4HI	GCNGC	2 cut(s)	255, 765
FokI	GGATG	5 cut(s)	41, 581, 1001, 1047, 1089
FriOI	GRGCYC	2 cut(s)	200, 733
Fsp4HI	GCNGC	2 cut(s)	255, 765
FspBI	CTAG	2 cut(s)	354, 761
GlaI	GCGC	2 cut(s)	385, 1093
GluI	GCNGC	2 cut(s)	255, 765
GsuI	CTGGAG	2 cut(s)	424, 649
HapII	CCGG	1 cut(s)	1032
HhaI	GCGC	2 cut(s)	386, 1094
Hin1II	CATG	8 cut(s)	92, 254, 685, 787, 816, 931, 1028, 1127
Hin6I	GCGC	2 cut(s)	384, 1092
HinP1I	GCGC	2 cut(s)	384, 1092
HinfI	GANTC	8 cut(s)	102, 238, 394, 641, 662, 705, 838, 916
HpaII	CCGG	1 cut(s)	1032
HphI	GGTGA	2 cut(s)	77, 598
Hpy166II	GTNNAC	2 cut(s)	274, 1022
Hpy188I	TCNGA	2 cut(s)	808, 1000
Hpy188III	TCNNGA	8 cut(s)	44, 320, 344, 391, 477, 513, 566, 666
Hpy8I	GTNNAC	2 cut(s)	274, 1022
Hpy99I	CGWCG	2 cut(s)	68, 161
HpyAV	CCTTC	4 cut(s)	62, 86, 356, 948
HpyCH4III	ACNGT	5 cut(s)	21, 280, 302, 371, 972
HpyCH4IV	ACGT	2 cut(s)	63, 751
HpyCH4V	TGCA	8 cut(s)	228, 247, 257, 305, 572, 896, 992, 1038
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1044
HpyF3I	CTNAG	7 cut(s)	142, 465, 610, 714, 768, 807, 899
HpySE526I	ACGT	2 cut(s)	63, 751
Hsp92II	CATG	8 cut(s)	92, 254, 685, 787, 816, 931, 1028, 1127
HspAI	GCGC	2 cut(s)	384, 1092
Ksp22I	TGATCA	1 cut(s)	1102
Kzo9I	GATC	3 cut(s)	160, 771, 1102
LmnI	GCTCC	4 cut(s)	95, 203, 443, 466
Lsp1109I	GCAGC	2 cut(s)	241, 776
LweI	GCATC	5 cut(s)	24, 559, 898, 979, 1025
MaeI	CTAG	2 cut(s)	354, 761
MaeII	ACGT	2 cut(s)	63, 751
MaeIII	GTNAC	4 cut(s)	53, 285, 365, 930
MalI	GATC	3 cut(s)	162, 773, 1104
MboI	GATC	3 cut(s)	160, 771, 1102
MboII	GAAGA	2 cut(s)	705, 974
MhlI	GDGCHC	2 cut(s)	200, 733
MluCI	AATT	3 cut(s)	119, 451, 796
MlyI	GAGTC	5 cut(s)	96, 232, 403, 656, 910
MmeI	TCCRAC	1 cut(s)	519
Mph1103I	ATGCAT	1 cut(s)	1040
MseI	TTAA	7 cut(s)	137, 282, 333, 450, 533, 756, 1113
MslI	CAYNNNNRTG	1 cut(s)	631
MspA1I	CMGCKG	1 cut(s)	767
MspCI	CTTAAG	1 cut(s)	755
MspI	CCGG	1 cut(s)	1032
MvnI	CGCG	2 cut(s)	384, 1092
MwoI	GCNNNNNNNGC	1 cut(s)	1044
NdeII	GATC	3 cut(s)	160, 771, 1102
NheI	GCTAGC	1 cut(s)	760
NlaIII	CATG	8 cut(s)	92, 254, 685, 787, 816, 931, 1028, 1127
NlaIV	GGNNCC	3 cut(s)	199, 439, 618
NmuCI	GTSAC	1 cut(s)	930
NsiI	ATGCAT	1 cut(s)	1040
NspI	RCATGY	2 cut(s)	816, 1028
PaeR7I	CTCGAG	2 cut(s)	104, 344
PciI	ACATGT	1 cut(s)	1024
PfeI	GAWTC	3 cut(s)	641, 705, 838
Pfl23II	CGTACG	1 cut(s)	379
PkrI	GCNGC	2 cut(s)	256, 766
PleI	GAGTC	5 cut(s)	96, 232, 402, 656, 910
PpsI	GAGTC	5 cut(s)	96, 232, 402, 656, 910
PscI	ACATGT	1 cut(s)	1024
PshAI	GACNNNNGTC	1 cut(s)	920
PshBI	ATTAAT	1 cut(s)	137
PspLI	CGTACG	1 cut(s)	379
PspN4I	GGNNCC	3 cut(s)	199, 439, 618
PspXI	VCTCGAGB	1 cut(s)	104
PvuII	CAGCTG	1 cut(s)	767
RsaI	GTAC	4 cut(s)	151, 273, 381, 501
RsaNI	GTAC	4 cut(s)	150, 272, 380, 500
RseI	CAYNNNNRTG	1 cut(s)	631
SaqAI	TTAA	7 cut(s)	137, 282, 333, 450, 533, 756, 1113
SatI	GCNGC	2 cut(s)	255, 765
Sau3AI	GATC	3 cut(s)	160, 771, 1102
SchI	GAGTC	5 cut(s)	96, 232, 403, 656, 910
SduI	GDGCHC	2 cut(s)	200, 733
SfaNI	GCATC	5 cut(s)	24, 559, 898, 979, 1025
Sfr274I	CTCGAG	2 cut(s)	104, 344
SlaI	CTCGAG	2 cut(s)	104, 344
SmiMI	CAYNNNNRTG	1 cut(s)	631
SmlI	CTYRAG	6 cut(s)	104, 188, 344, 732, 755, 864
SmoI	CTYRAG	6 cut(s)	104, 188, 344, 732, 755, 864
Sse9I	AATT	3 cut(s)	119, 451, 796
SsiI	CCGC	1 cut(s)	702
SspMI	CTAG	2 cut(s)	354, 761
StyI	CCWWGG	2 cut(s)	24, 845
TaaI	ACNGT	5 cut(s)	21, 280, 302, 371, 972
TaiI	ACGT	2 cut(s)	66, 754
TaqI	TCGA	5 cut(s)	66, 105, 345, 390, 738
TasI	AATT	3 cut(s)	119, 451, 796
TfiI	GAWTC	3 cut(s)	641, 705, 838
Tru1I	TTAA	7 cut(s)	137, 282, 333, 450, 533, 756, 1113
Tru9I	TTAA	7 cut(s)	137, 282, 333, 450, 533, 756, 1113
TscAI	CASTG	2 cut(s)	651, 1011
TseFI	GTSAC	1 cut(s)	930
TseI	GCWGC	2 cut(s)	254, 764
Tsp45I	GTSAC	1 cut(s)	930
TspDTI	ATGAA	7 cut(s)	105, 375, 697, 800, 809, 851, 869
TspRI	CASTG	2 cut(s)	651, 1011
Vha464I	CTTAAG	1 cut(s)	755
VspI	ATTAAT	1 cut(s)	137
XceI	RCATGY	2 cut(s)	816, 1028
XhoI	CTCGAG	2 cut(s)	104, 344
XspI	CTAG	2 cut(s)	354, 761
Zsp2I	ATGCAT	1 cut(s)	1040

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.