Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0002680

Physical Location & Seq

Genomic Coordinates Forward (+)

9949691 .. 9953400

Gene Structure 3710 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG047300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGATTTGGGTTGTTGTTTTGCCATGTGGTTCCCCCAAACCTATCAAGCCTTACAAGTTGGAGCTTGCCATATATTCTAGTATGCAGGCACGACCTGCATTTTTGGGTAATAACAATCCAGCAACTGCACCACCAGCAACTGCACCACCAGCAACTGCAGAAGATATAGAGTTGGCCGTGGCTCTCAGTGCCTCCCTTCATTCTGCTTCACAGGAGAGACCACGCTCAAGTAGCTCCGGTACCTCTACAAATGCTTCTAACATGAATGGTTGGAGTACGTCCACAAACACTGGCAACTACAACTGTTGGGATGCAACAATTGCAGCTGCTTCTCCAAAAGTACGTAGCAGCGACTGGTCAGGGGTTCAAACTGGCCTAGTTGGTGACTCAATTGGACATGCAAACATCCAGGAAATCTCTCCTACCCAAACAACTCCTACCTCTGATTCAGTTATATCATCTTCAACACAATCAGCTGCAATCCCATCAGCTTCACCAGTTTTAGATGGAAGTCTAGATGAATATCCTATCCACTATCCATCAATTGATGACAGCCCTATTGATCTATCAAACCCAACTGCTGAAAGTGTACCTCCTACAGTTGTGAAAAGAAAGGTGATGGGCCTCTTCTTCATGTGTGATTTGTTTAGATGCACCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Methyltransf_29 zf-C3HC4_3

Protein Analysis

220

Amino Acids

23.04

Weight (kDa)

4.9

Isoelectric Point (pI)

57.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002680)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23280 AT3G23280 AT4G14365
fragaria_vesca	FvH4_4g03720 FvH4_4g03720 FvH4_4g03730
malus_domestica	MD05G1075400.v1.1 MD13G1214800.v1.1 MD16G1219900.v1.1
prunus_persica	Prupe.1G040200_v2.0.a1 Prupe.1G040200_v2.0.a1
pyrus_communis	pycom13g18820 pycom16g18320
rosa_chinensis	RchiOBHm_Chr4g0393331 RchiOBHm_Chr4g0393371
rosa_laevigata	RLG00000009750 RLG00000009758 RLG00000009759 RLG00000009763
rosa_multiflora	Rmu_sc0008931.1_g000009
rosa_roxburghii	Rroxscaffold_3G00224380 Rroxscaffold_5G00338320 Rroxscaffold_5G00338340 Rroxscaffold_5G00338360 Rroxscaffold_5G00338390
rosa_rugosa	Rorug04G0001300 Rorug04G0001500 Rorug04G0001800
rosa_samantha	Rh4AG046800 Rh4AG047000 Rh4AG047300 Rh4AG047400 Rh4BG042400 Rh4BG042600 Rh4CG049900 Rh4CG050000 Rh4DG044200 Rh5AG327600
rosa_wichuraiana	Rw4G003700 Rw4G003720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	103
Acc65I	GGTACC	1 cut(s)	239
AccB1I	GGYRCC	1 cut(s)	239
AcoI	YGGCCR	1 cut(s)	174
AfaI	GTAC	4 cut(s)	241, 277, 342, 591
AgsI	TTSAA	2 cut(s)	368, 465
AjnI	CCWGG	1 cut(s)	408
AluBI	AGCT	5 cut(s)	64, 234, 326, 476, 491
AluI	AGCT	5 cut(s)	64, 234, 326, 476, 491
Alw26I	GTCTC	1 cut(s)	211
AlwNI	CAGNNNCTG	4 cut(s)	125, 140, 155, 354
AoxI	GGCC	3 cut(s)	174, 373, 622
ApeKI	GCWGC	4 cut(s)	323, 326, 348, 476
Asp718I	GGTACC	1 cut(s)	239
AspS9I	GGNCC	1 cut(s)	622
AsuHPI	GGTGA	3 cut(s)	395, 486, 628
BanI	GGYRCC	1 cut(s)	239
BbvI	GCAGC	4 cut(s)	313, 335, 360, 463
BccI	CCATC	4 cut(s)	493, 500, 547, 613
BceAI	ACGGC	1 cut(s)	161
BciT130I	CCWGG	1 cut(s)	410
BcoDI	GTCTC	1 cut(s)	211
BfaI	CTAG	3 cut(s)	78, 377, 515
BfmI	CTRYAG	2 cut(s)	156, 597
BfuAI	ACCTGC	1 cut(s)	103
BisI	GCNGC	4 cut(s)	324, 327, 349, 477
BlsI	GCNGC	4 cut(s)	325, 328, 350, 478
Bme1390I	CCNGG	1 cut(s)	410
BmgT120I	GGNCC	1 cut(s)	622
BmiI	GGNNCC	2 cut(s)	31, 241
BmrFI	CCNGG	1 cut(s)	410
BmsI	GCATC	2 cut(s)	301, 641
BpuEI	CTTGAG	1 cut(s)	211
BsaAI	YACGTR	1 cut(s)	344
BsaBI	GATNNNNATC	1 cut(s)	522
BsaI	GGTCTC	1 cut(s)	211
BsaJI	CCNNGG	1 cut(s)	177
BsaWI	WCCGGW	1 cut(s)	236
Bse1I	ACTGG	5 cut(s)	295, 359, 376, 497, 657
Bse8I	GATNNNNATC	1 cut(s)	522
BseBI	CCWGG	1 cut(s)	410
BseDI	CCNNGG	1 cut(s)	177
BseGI	GGATG	2 cut(s)	316, 405
BseJI	GATNNNNATC	1 cut(s)	522
BseMII	CTCAG	1 cut(s)	199
BseNI	ACTGG	5 cut(s)	295, 359, 376, 497, 657
BseXI	GCAGC	4 cut(s)	313, 335, 360, 463
BsgI	GTGCAG	2 cut(s)	111, 126
BshFI	GGCC	3 cut(s)	176, 375, 624
BshNI	GGYRCC	1 cut(s)	239
BsiSI	CCGG	1 cut(s)	237
BsmAI	GTCTC	1 cut(s)	211
BsnI	GGCC	3 cut(s)	176, 375, 624
Bso31I	GGTCTC	1 cut(s)	211
Bsp143I	GATC	1 cut(s)	562
BspANI	GGCC	3 cut(s)	176, 375, 624
BspCNI	CTCAG	1 cut(s)	198
BspLI	GGNNCC	2 cut(s)	31, 241
BspMAI	CTGCAG	1 cut(s)	160
BspMI	ACCTGC	1 cut(s)	103
BspT107I	GGYRCC	1 cut(s)	239
BspTNI	GGTCTC	1 cut(s)	211
BsrI	ACTGG	5 cut(s)	295, 359, 376, 497, 657
BssECI	CCNNGG	1 cut(s)	177
BssMI	GATC	1 cut(s)	562
Bst2UI	CCWGG	1 cut(s)	410
Bst4CI	ACNGT	2 cut(s)	305, 601
Bst6I	CTCTTC	1 cut(s)	632
BstAPI	GCANNNNNTGC	2 cut(s)	95, 320
BstBAI	YACGTR	1 cut(s)	344
BstC8I	GCNNGC	2 cut(s)	66, 87
BstDEI	CTNAG	1 cut(s)	185
BstDSI	CCRYGG	1 cut(s)	177
BstF5I	GGATG	2 cut(s)	316, 405
BstKTI	GATC	1 cut(s)	565
BstMAI	GTCTC	1 cut(s)	211
BstMBI	GATC	1 cut(s)	562
BstMWI	GCNNNNNNNGC	6 cut(s)	95, 134, 149, 188, 231, 320
BstNI	CCWGG	1 cut(s)	410
BstNSI	RCATGY	1 cut(s)	401
BstSCI	CCNGG	1 cut(s)	408
BstSFI	CTRYAG	2 cut(s)	156, 597
BstSNI	TACGTA	1 cut(s)	344
BstV1I	GCAGC	4 cut(s)	313, 335, 360, 463
BsuRI	GGCC	3 cut(s)	176, 375, 624
BtgI	CCRYGG	1 cut(s)	177
BtsCI	GGATG	2 cut(s)	316, 405
BtsIMutI	CAGTG	2 cut(s)	193, 288
BveI	ACCTGC	1 cut(s)	103
Cac8I	GCNNGC	2 cut(s)	66, 87
CaiI	CAGNNNCTG	4 cut(s)	125, 140, 155, 354
Cfr13I	GGNCC	1 cut(s)	622
Csp6I	GTAC	4 cut(s)	240, 276, 341, 590
CviAII	CATG	4 cut(s)	24, 262, 398, 634
CviQI	GTAC	4 cut(s)	240, 276, 341, 590
DdeI	CTNAG	1 cut(s)	185
DpnI	GATC	1 cut(s)	564
DpnII	GATC	1 cut(s)	562
EaeI	YGGCCR	1 cut(s)	174
Eam1104I	CTCTTC	1 cut(s)	632
EarI	CTCTTC	1 cut(s)	632
Eco105I	TACGTA	1 cut(s)	344
Eco31I	GGTCTC	1 cut(s)	211
EcoRII	CCWGG	1 cut(s)	408
FaeI	CATG	4 cut(s)	27, 265, 401, 637
FaiI	YATR	9 cut(s)	25, 71, 73, 83, 167, 263, 399, 455, 635
FatI	CATG	4 cut(s)	23, 261, 397, 633
Fnu4HI	GCNGC	4 cut(s)	324, 327, 349, 477
FokI	GGATG	2 cut(s)	323, 392
Fsp4HI	GCNGC	4 cut(s)	324, 327, 349, 477
FspBI	CTAG	3 cut(s)	78, 377, 515
GluI	GCNGC	4 cut(s)	324, 327, 349, 477
HaeIII	GGCC	3 cut(s)	176, 375, 624
HapII	CCGG	1 cut(s)	237
Hin1II	CATG	4 cut(s)	27, 265, 401, 637
HinfI	GANTC	2 cut(s)	386, 446
HpaII	CCGG	1 cut(s)	237
HphI	GGTGA	3 cut(s)	395, 486, 628
Hpy166II	GTNNAC	2 cut(s)	282, 590
Hpy188I	TCNGA	1 cut(s)	445
Hpy188III	TCNNGA	1 cut(s)	515
Hpy8I	GTNNAC	2 cut(s)	282, 590
HpyAV	CCTTC	1 cut(s)	206
HpyCH4III	ACNGT	2 cut(s)	305, 601
HpyCH4IV	ACGT	2 cut(s)	278, 343
HpyF10VI	GCNNNNNNNGC	6 cut(s)	95, 134, 149, 188, 231, 320
HpyF3I	CTNAG	1 cut(s)	185
HpySE526I	ACGT	2 cut(s)	278, 343
Hsp92II	CATG	4 cut(s)	27, 265, 401, 637
KpnI	GGTACC	1 cut(s)	243
Kzo9I	GATC	1 cut(s)	562
LmnI	GCTCC	2 cut(s)	61, 239
Lsp1109I	GCAGC	4 cut(s)	313, 335, 360, 463
LweI	GCATC	2 cut(s)	301, 641
MaeI	CTAG	3 cut(s)	78, 377, 515
MaeII	ACGT	2 cut(s)	278, 343
MaeIII	GTNAC	1 cut(s)	383
MalI	GATC	1 cut(s)	564
MboI	GATC	1 cut(s)	562
MboII	GAAGA	4 cut(s)	173, 453, 619, 622
MfeI	CAATTG	3 cut(s)	318, 390, 543
MluCI	AATT	3 cut(s)	318, 390, 543
MlyI	GAGTC	1 cut(s)	380
MmeI	TCCRAC	2 cut(s)	39, 251
MnlI	CCTC	5 cut(s)	202, 253, 451, 603, 635
MspA1I	CMGCKG	2 cut(s)	326, 476
MspI	CCGG	1 cut(s)	237
MspR9I	CCNGG	1 cut(s)	410
MunI	CAATTG	3 cut(s)	318, 390, 543
MvaI	CCWGG	1 cut(s)	410
MwoI	GCNNNNNNNGC	6 cut(s)	95, 134, 149, 188, 231, 320
NdeII	GATC	1 cut(s)	562
NlaIII	CATG	4 cut(s)	27, 265, 401, 637
NlaIV	GGNNCC	2 cut(s)	31, 241
NmuCI	GTSAC	1 cut(s)	383
NspI	RCATGY	1 cut(s)	401
PfeI	GAWTC	1 cut(s)	446
PfoI	TCCNGGA	1 cut(s)	408
PkrI	GCNGC	4 cut(s)	325, 328, 350, 478
PleI	GAGTC	1 cut(s)	380
PpsI	GAGTC	1 cut(s)	380
Ppu21I	YACGTR	1 cut(s)	344
Psp6I	CCWGG	1 cut(s)	408
PspGI	CCWGG	1 cut(s)	408
PspN4I	GGNNCC	2 cut(s)	31, 241
PspPI	GGNCC	1 cut(s)	622
PstI	CTGCAG	1 cut(s)	160
PstNI	CAGNNNCTG	4 cut(s)	125, 140, 155, 354
PvuII	CAGCTG	2 cut(s)	326, 476
RsaI	GTAC	4 cut(s)	241, 277, 342, 591
RsaNI	GTAC	4 cut(s)	240, 276, 341, 590
SatI	GCNGC	4 cut(s)	324, 327, 349, 477
Sau3AI	GATC	1 cut(s)	562
Sau96I	GGNCC	1 cut(s)	622
SchI	GAGTC	1 cut(s)	380
ScrFI	CCNGG	1 cut(s)	410
SfaNI	GCATC	2 cut(s)	301, 641
SfcI	CTRYAG	2 cut(s)	156, 597
SmlI	CTYRAG	1 cut(s)	226
SmoI	CTYRAG	1 cut(s)	226
SnaBI	TACGTA	1 cut(s)	344
Sse9I	AATT	3 cut(s)	318, 390, 543
SspMI	CTAG	3 cut(s)	78, 377, 515
StyD4I	CCNGG	1 cut(s)	408
TaaI	ACNGT	2 cut(s)	305, 601
TaiI	ACGT	2 cut(s)	281, 346
TasI	AATT	3 cut(s)	318, 390, 543
TfiI	GAWTC	1 cut(s)	446
TscAI	CASTG	2 cut(s)	193, 295
TseFI	GTSAC	1 cut(s)	383
TseI	GCWGC	4 cut(s)	323, 326, 348, 476
Tsp45I	GTSAC	1 cut(s)	383
TspDTI	ATGAA	4 cut(s)	188, 278, 534, 622
TspRI	CASTG	2 cut(s)	193, 295
XbaI	TCTAGA	1 cut(s)	514
XceI	RCATGY	1 cut(s)	401
XspI	CTAG	3 cut(s)	78, 377, 515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.