Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0002680

Physical Location & Seq

Genomic Coordinates Forward (+)

10076539 .. 10078137

Gene Structure 1599 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG050000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGGGTCGTCTTCCTCCCAGAGAATCAACATTATTCAGAAACTCGAAGTCGATAACAGTTTTCCTCTGCGTTTTTACTTTCGGATGGCTGATATATTTCTCAGACAGGCTGACATATATTGGGAAGAGAAAGATATTTTTTACCTGTACATTACGCTCCTAAGGTTTGCAAGTTTGGTCTCCGAGACAATACCGGATCATCAAGACTATATAAAGGCTGATCAAAGAGAAAGATCCTCTCAGAAGGAAGTGAAAAAGAAATTGTTGAATGCTCTTGTTGAGCTAGAGGAGTTAAAACCAGCAGTTAAACAGAAGATCAATGAGATAAACAGAGGAAATGCATATCAAAACAGCAGGCATGATCACCAAACTGGGGAAAGTATACCTCGTAGATCTGATAAAAAGAAAGTCGAAAGTGTGGGGACTTGTAGCTCCAGTACTGGTGGAGAGAATTTACCCCACACCCAACACCAGAGTTTCCCCTTGGTCTCCGTGGTAACAGGAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016579 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0070536 GO:0070646 GO:0070647 GO:0071108 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

JAB USP8_dimer

Protein Analysis

169

Amino Acids

19.49

Weight (kDa)

7.85

Isoelectric Point (pI)

46.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
USP8_dimer	PF08969	13 - 104	3.5e-10	USP8 dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002680)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23280 AT3G23280 AT4G14365
fragaria_vesca	FvH4_4g03720 FvH4_4g03720 FvH4_4g03730
malus_domestica	MD05G1075400.v1.1 MD13G1214800.v1.1 MD16G1219900.v1.1
prunus_persica	Prupe.1G040200_v2.0.a1 Prupe.1G040200_v2.0.a1
pyrus_communis	pycom13g18820 pycom16g18320
rosa_chinensis	RchiOBHm_Chr4g0393331 RchiOBHm_Chr4g0393371
rosa_laevigata	RLG00000009750 RLG00000009758 RLG00000009759 RLG00000009763
rosa_multiflora	Rmu_sc0008931.1_g000009
rosa_roxburghii	Rroxscaffold_3G00224380 Rroxscaffold_5G00338320 Rroxscaffold_5G00338340 Rroxscaffold_5G00338360 Rroxscaffold_5G00338390
rosa_rugosa	Rorug04G0001300 Rorug04G0001500 Rorug04G0001800
rosa_samantha	Rh4AG046800 Rh4AG047000 Rh4AG047300 Rh4AG047400 Rh4BG042400 Rh4BG042600 Rh4CG049900 Rh4CG050000 Rh4DG044200 Rh5AG327600
rosa_wichuraiana	Rw4G003700 Rw4G003720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	382
AclWI	GGATC	2 cut(s)	204, 228
AcsI	RAATTY	1 cut(s)	451
AfaI	GTAC	2 cut(s)	149, 439
AfiI	CCNNNNNNNGG	1 cut(s)	373
AgsI	TTSAA	1 cut(s)	268
AluBI	AGCT	2 cut(s)	283, 432
AluI	AGCT	2 cut(s)	283, 432
Alw26I	GTCTC	3 cut(s)	179, 184, 493
AlwI	GGATC	2 cut(s)	204, 228
ApoI	RAATTY	1 cut(s)	451
AsuHPI	GGTGA	1 cut(s)	356
AxyI	CCTNAGG	1 cut(s)	161
BbsI	GAAGAC	1 cut(s)	3
BccI	CCATC	1 cut(s)	79
BclI	TGATCA	2 cut(s)	220, 361
BcoDI	GTCTC	3 cut(s)	179, 184, 493
BfaI	CTAG	1 cut(s)	284
BglII	AGATCT	1 cut(s)	392
BmcAI	AGTACT	1 cut(s)	439
BmrI	ACTGGG	1 cut(s)	381
BmuI	ACTGGG	1 cut(s)	381
BpiI	GAAGAC	1 cut(s)	3
BpmI	CTGGAG	1 cut(s)	418
BsaI	GGTCTC	2 cut(s)	184, 493
BsaJI	CCNNGG	2 cut(s)	483, 492
BsaWI	WCCGGW	1 cut(s)	193
Bsc4I	CCNNNNNNNGG	1 cut(s)	373
Bse1I	ACTGG	3 cut(s)	376, 435, 445
Bse21I	CCTNAGG	1 cut(s)	161
BseDI	CCNNGG	2 cut(s)	483, 492
BseGI	GGATG	1 cut(s)	90
BseLI	CCNNNNNNNGG	1 cut(s)	373
BseMII	CTCAG	2 cut(s)	115, 254
BseNI	ACTGG	3 cut(s)	376, 435, 445
BseRI	GAGGAG	1 cut(s)	302
BsiSI	CCGG	1 cut(s)	194
BslFI	GGGAC	1 cut(s)	436
BslI	CCNNNNNNNGG	1 cut(s)	373
BsmAI	GTCTC	3 cut(s)	179, 184, 493
BsmFI	GGGAC	1 cut(s)	436
BsmI	GAATGC	1 cut(s)	274
Bso31I	GGTCTC	2 cut(s)	184, 493
Bsp1407I	TGTACA	1 cut(s)	147
Bsp143I	GATC	6 cut(s)	196, 220, 233, 315, 361, 392
BspCNI	CTCAG	2 cut(s)	114, 253
BspPI	GGATC	2 cut(s)	204, 228
BspTNI	GGTCTC	2 cut(s)	184, 493
BsrGI	TGTACA	1 cut(s)	147
BsrI	ACTGG	3 cut(s)	376, 435, 445
BssECI	CCNNGG	2 cut(s)	483, 492
BssMI	GATC	6 cut(s)	196, 220, 233, 315, 361, 392
BssNAI	GTATAC	1 cut(s)	383
BssT1I	CCWWGG	1 cut(s)	483
Bst1107I	GTATAC	1 cut(s)	383
Bst4CI	ACNGT	1 cut(s)	59
Bst6I	CTCTTC	1 cut(s)	120
BstAUI	TGTACA	1 cut(s)	147
BstC8I	GCNNGC	1 cut(s)	356
BstDEI	CTNAG	3 cut(s)	101, 161, 240
BstDSI	CCRYGG	1 cut(s)	492
BstF5I	GGATG	1 cut(s)	90
BstKTI	GATC	6 cut(s)	199, 223, 236, 318, 364, 395
BstMAI	GTCTC	3 cut(s)	179, 184, 493
BstMBI	GATC	6 cut(s)	196, 220, 233, 315, 361, 392
BstV2I	GAAGAC	1 cut(s)	3
BstX2I	RGATCY	2 cut(s)	233, 392
BstYI	RGATCY	2 cut(s)	233, 392
BstZ17I	GTATAC	1 cut(s)	383
Bsu36I	CCTNAGG	1 cut(s)	161
BtgI	CCRYGG	1 cut(s)	492
BtsCI	GGATG	1 cut(s)	90
Cac8I	GCNNGC	1 cut(s)	356
Csp6I	GTAC	2 cut(s)	148, 438
CviAII	CATG	1 cut(s)	359
CviJI	RGCY	5 cut(s)	89, 110, 218, 283, 432
CviKI_1	RGCY	5 cut(s)	89, 110, 218, 283, 432
CviQI	GTAC	2 cut(s)	148, 438
DdeI	CTNAG	3 cut(s)	101, 161, 240
DpnI	GATC	6 cut(s)	198, 222, 235, 317, 363, 394
DpnII	GATC	6 cut(s)	196, 220, 233, 315, 361, 392
Eam1104I	CTCTTC	1 cut(s)	120
EarI	CTCTTC	1 cut(s)	120
Eco130I	CCWWGG	1 cut(s)	483
Eco31I	GGTCTC	2 cut(s)	184, 493
Eco81I	CCTNAGG	1 cut(s)	161
EcoT14I	CCWWGG	1 cut(s)	483
EcoT22I	ATGCAT	1 cut(s)	343
ErhI	CCWWGG	1 cut(s)	483
FaeI	CATG	1 cut(s)	362
FaiI	YATR	8 cut(s)	95, 116, 118, 210, 212, 343, 360, 383
FaqI	GGGAC	1 cut(s)	436
FatI	CATG	1 cut(s)	358
FbaI	TGATCA	2 cut(s)	220, 361
FblI	GTMKAC	1 cut(s)	382
FokI	GGATG	1 cut(s)	97
FspBI	CTAG	1 cut(s)	284
GsuI	CTGGAG	1 cut(s)	418
HapII	CCGG	1 cut(s)	194
Hin1II	CATG	1 cut(s)	362
HinfI	GANTC	1 cut(s)	24
HpaII	CCGG	1 cut(s)	194
HphI	GGTGA	1 cut(s)	356
Hpy166II	GTNNAC	1 cut(s)	383
Hpy188I	TCNGA	6 cut(s)	39, 84, 104, 184, 243, 397
Hpy188III	TCNNGA	1 cut(s)	203
Hpy8I	GTNNAC	1 cut(s)	383
HpyAV	CCTTC	1 cut(s)	238
HpyCH4III	ACNGT	1 cut(s)	59
HpyCH4V	TGCA	2 cut(s)	170, 341
HpyF3I	CTNAG	3 cut(s)	101, 161, 240
Hsp92II	CATG	1 cut(s)	362
Ksp22I	TGATCA	2 cut(s)	220, 361
Kzo9I	GATC	6 cut(s)	196, 220, 233, 315, 361, 392
LmnI	GCTCC	2 cut(s)	162, 437
MaeI	CTAG	1 cut(s)	284
MaeIII	GTNAC	1 cut(s)	496
MalI	GATC	6 cut(s)	198, 222, 235, 317, 363, 394
MboI	GATC	6 cut(s)	196, 220, 233, 315, 361, 392
MboII	GAAGA	3 cut(s)	3, 137, 325
MflI	RGATCY	2 cut(s)	233, 392
MluCI	AATT	2 cut(s)	260, 451
MnlI	CCTC	6 cut(s)	25, 75, 247, 280, 326, 396
Mph1103I	ATGCAT	1 cut(s)	343
MseI	TTAA	3 cut(s)	293, 306, 508
MspI	CCGG	1 cut(s)	194
Mva1269I	GAATGC	1 cut(s)	274
NdeII	GATC	6 cut(s)	196, 220, 233, 315, 361, 392
NlaIII	CATG	1 cut(s)	362
NsiI	ATGCAT	1 cut(s)	343
PctI	GAATGC	1 cut(s)	274
PfeI	GAWTC	1 cut(s)	24
PsuI	RGATCY	2 cut(s)	233, 392
RsaI	GTAC	2 cut(s)	149, 439
RsaNI	GTAC	2 cut(s)	148, 438
SaqAI	TTAA	3 cut(s)	293, 306, 508
Sau3AI	GATC	6 cut(s)	196, 220, 233, 315, 361, 392
ScaI	AGTACT	1 cut(s)	439
SetI	ASST	5 cut(s)	147, 167, 285, 388, 434
Sse9I	AATT	2 cut(s)	260, 451
SspMI	CTAG	1 cut(s)	284
StyI	CCWWGG	1 cut(s)	483
TaaI	ACNGT	1 cut(s)	59
TaqI	TCGA	3 cut(s)	45, 51, 411
TasI	AATT	2 cut(s)	260, 451
TatI	WGTACW	2 cut(s)	147, 437
TfiI	GAWTC	1 cut(s)	24
Tru1I	TTAA	3 cut(s)	293, 306, 508
Tru9I	TTAA	3 cut(s)	293, 306, 508
TspGWI	ACGGA	1 cut(s)	481
XapI	RAATTY	1 cut(s)	451
XmiI	GTMKAC	1 cut(s)	382
XspI	CTAG	1 cut(s)	284
ZrmI	AGTACT	1 cut(s)	439
Zsp2I	ATGCAT	1 cut(s)	343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.