Prupe.1G040200_v2.0.a1

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
2856523 .. 2861986
5464 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G040200.2

Sequence Viewer

Length: 1479 bp
ATGGGGCTACAGCAATCCAAAGACGAACTGCTCTATCAGCAAGTTAGCTATGGAAACATCGAAGGGATCAAATCCCTTTGCAGAGAAGGCGCAGGCCTTGAGTGGATTGATAGAGAGGGGAAAACCCCATTGATCTTTGCATGTATGAATCCTGGGCTTTATAATGTTGCGAAAAGCTTGATTGAACTTGGCGCAAACGTCAACGCCTATCGCCCCGGTCGTAATGCTGGGACTCCTCTACATCATGCAGCTAAAAAAGGGCTAGAAGATATTGTTAATTTACTTCTTTCACATGGAGCAAATGTGTTAATCATGAATGATGACTGTCAAACTCCTCTTGACGTTGCTAGGGCAAAAGGGCACACCAATGTTGTCCGTGCGATTGAGAGGCATATTTGCTTATTCTCTGGTTGGTTGCGGGAGTTTTATGGTCCTGGATTTCTTGAAGTACTTGCTCCTCAGTTGGTTTCAAGAAAAGTTTGGGTTGTTGTTTTGCCAAGTGGTTCCCGCAAACCTACCAAGCCTTTCAAGTTGGAACTTGCCATATATTCTAGTATGCAGGACGCCCGACCACGGACAGTTGTTGCGTTGTGGAAAGTCAATTTGGAAGAACCGAAGTTACACCAGTCTGATCCTTCTGTTGTATTTCATGATAGCTCCACAATCCCAAGAGGCAGGAGGCGGAGAAGAAGCATTTACATCTCCCAAGAGGCTAGGTGTAGGCATCAAAAAGTTAGGCAAACACGCATTAAACTTGCATCTGCAGATGAAAATGATAAGAAACAACTTCAGTGGTTTTGCAATGCATGCAAAGGAATTCCACAGGCGCGTCCTGCATTTTTGGCCAACAACCAGCCCCCGGTTCCAGCAACTGCACCACCACCTGCAGAAGACTTAGAGTTGGCCATGGCTATCAATGCCTCCATTCAGTCTGCTTTGCAGGAGAGACCGTCCTTTCCTGATGCACACCCGACCTATGAAGGAAGTGCATCCAGTAGTGATAATGGTTGCGGCACATCCTCCATGAATACTGGCAGCTATAATGGTTGGGATGCACCAATTGCAACAGCTGCTCCAAATGCAAGTAGTAGCAGTGAGCGGCCAGGGAATGAAAGTGGCCCGAAAACGGAAATCCAGGATATCTCTTCCATCCAAACAGCTCCTACTTCAGATATAATCCCATCAGCTCCACCAGTTGCAGATGAGGAGCCTATTCACTATCCGTCAATTGATTTCAGTCCTATTGATATGCCATCCCCAAGTGTTGAAATTATACCTGCTAAACTTAATGAAAAGAAAGGTGGAAGTGATTCTTCTTCATGTGTGATTTGTTTGGATGCTCCGGTTGAAGGAGCTTGCATCCCATGTGGACATATGGCTGGATGCATGTCTTGTTTGGGTGAGATTAAAGCTAAGAAATGGGGTTGCCCTGTCTGTCGGGCCAAGATTGACCAGATTGTAAAGCTGTATTCTGTATGA

Protein Analysis

493

Amino Acids

53.42

Weight (kDa)

7.84

Isoelectric Point (pI)

58.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 162
AarI CACCTGC 1 cut(s) 892
Acc36I ACCTGC 2 cut(s) 892, 1285
AccBSI CCGCTC 1 cut(s) 1099
AccII CGCG 1 cut(s) 829
AciI CCGC 5 cut(s) 418, 508, 682, 1011, 1099
AclWI GGATC 2 cut(s) 74, 626
AcoI YGGCCR 3 cut(s) 843, 903, 1100
AcsI RAATTY 1 cut(s) 816
AcuI CTGAAG 2 cut(s) 773, 1152
AcyI GRCGYC 1 cut(s) 564
AfaI GTAC 1 cut(s) 450
AfiI CCNNNNNNNGG 4 cut(s) 573, 859, 1126, 1349
AgsI TTSAA 6 cut(s) 185, 446, 471, 529, 1268, 1349
AjnI CCWGG 4 cut(s) 151, 433, 1102, 1134
AjuI GAANNNNNNNTTGG 2 cut(s) 587, 619
Alw26I GTCTC 1 cut(s) 940
AlwI GGATC 2 cut(s) 74, 626
AlwNI CAGNNNCTG 1 cut(s) 872
AoxI GGCC 6 cut(s) 94, 843, 903, 1100, 1117, 1440
ApeKI GCWGC 3 cut(s) 248, 1035, 1070
ApoI RAATTY 1 cut(s) 816
Asp700I GAANNNNTTC 1 cut(s) 1309
AspLEI GCGC 3 cut(s) 92, 194, 829
AspS9I GGNCC 3 cut(s) 431, 1118, 1440
AsuC2I CCSGG 2 cut(s) 216, 860
AsuHPI GGTGA 1 cut(s) 1412
AvaII GGWCC 1 cut(s) 431
BaeGI GKGCMC 1 cut(s) 363
BalI TGGCCA 2 cut(s) 845, 905
BbsI GAAGAC 1 cut(s) 897
BbvI GCAGC 3 cut(s) 260, 1047, 1057
BccI CCATC 3 cut(s) 1157, 1189, 1261
BciT130I CCWGG 4 cut(s) 153, 435, 1104, 1136
BcnI CCSGG 2 cut(s) 216, 860
BcoDI GTCTC 1 cut(s) 940
BfaI CTAG 4 cut(s) 263, 348, 552, 714
BfmI CTRYAG 3 cut(s) 8, 762, 885
BfuAI ACCTGC 2 cut(s) 892, 1285
BisI GCNGC 5 cut(s) 249, 1012, 1036, 1071, 1100
BlsI GCNGC 5 cut(s) 250, 1013, 1037, 1072, 1101
BmcAI AGTACT 1 cut(s) 450
Bme1390I CCNGG 6 cut(s) 153, 216, 435, 860, 1104, 1136
Bme18I GGWCC 1 cut(s) 431
BmgT120I GGNCC 3 cut(s) 431, 1118, 1440
BmiI GGNNCC 3 cut(s) 505, 864, 1209
BmrFI CCNGG 6 cut(s) 153, 216, 435, 860, 1104, 1136
BmsI GCATC 8 cut(s) 733, 767, 952, 998, 1042, 1327, 1368, 1373
BpiI GAAGAC 1 cut(s) 897
BpuEI CTTGAG 1 cut(s) 119
BpuMI CCSGG 2 cut(s) 216, 860
BsaHI GRCGYC 1 cut(s) 564
BsaI GGTCTC 1 cut(s) 940
BsaJI CCNNGG 6 cut(s) 152, 214, 572, 858, 906, 1103
BsaWI WCCGGW 1 cut(s) 1342
BsaXI ACNNNNNCTCC 6 cut(s) 288, 318, 935, 965, 1057, 1087
Bsc4I CCNNNNNNNGG 4 cut(s) 573, 859, 1126, 1349
Bse1I ACTGG 4 cut(s) 625, 993, 1036, 1193
Bse3DI GCAATG 1 cut(s) 808
BseBI CCWGG 4 cut(s) 153, 435, 1104, 1136
BseDI CCNNGG 6 cut(s) 152, 214, 572, 858, 906, 1103
BseGI GGATG 8 cut(s) 989, 1016, 1057, 1149, 1253, 1342, 1359, 1388
BseLI CCNNNNNNNGG 4 cut(s) 573, 859, 1126, 1349
BseMI GCAATG 1 cut(s) 808
BseMII CTCAG 1 cut(s) 473
BseNI ACTGG 4 cut(s) 625, 993, 1036, 1193
BseRI GAGGAG 4 cut(s) 225, 324, 447, 1220
BseSI GKGCMC 1 cut(s) 363
BseXI GCAGC 3 cut(s) 260, 1047, 1057
BseYI CCCAGC 1 cut(s) 227
BsgI GTGCAG 1 cut(s) 858
Bsh1236I CGCG 1 cut(s) 829
Bsh1285I CGRYCG 1 cut(s) 220
BshFI GGCC 6 cut(s) 96, 845, 905, 1102, 1119, 1442
BsiEI CGRYCG 1 cut(s) 220
BsiSI CCGG 3 cut(s) 216, 860, 1343
BslFI GGGAC 1 cut(s) 244
BslI CCNNNNNNNGG 4 cut(s) 573, 859, 1126, 1349
BsmAI GTCTC 1 cut(s) 940
BsmFI GGGAC 1 cut(s) 244
BsnI GGCC 6 cut(s) 96, 845, 905, 1102, 1119, 1442
Bso31I GGTCTC 1 cut(s) 940
Bsp1286I GDGCHC 1 cut(s) 363
Bsp143I GATC 3 cut(s) 66, 132, 631
Bsp19I CCATGG 1 cut(s) 906
BspACI CCGC 5 cut(s) 418, 508, 682, 1011, 1099
BspANI GGCC 6 cut(s) 96, 845, 905, 1102, 1119, 1442
BspCNI CTCAG 1 cut(s) 472
BspFNI CGCG 1 cut(s) 829
BspHI TCATGA 2 cut(s) 312, 649
BspLI GGNNCC 3 cut(s) 505, 864, 1209
BspMAI CTGCAG 2 cut(s) 766, 889
BspMI ACCTGC 2 cut(s) 892, 1285
BspPI GGATC 2 cut(s) 74, 626
BspTNI GGTCTC 1 cut(s) 940
BsrBI CCGCTC 1 cut(s) 1099
BsrDI GCAATG 1 cut(s) 808
BsrI ACTGG 4 cut(s) 625, 993, 1036, 1193
BssECI CCNNGG 6 cut(s) 152, 214, 572, 858, 906, 1103
BssMI GATC 3 cut(s) 66, 132, 631
BssNI GRCGYC 1 cut(s) 564
BssT1I CCWWGG 1 cut(s) 906
Bst2UI CCWGG 4 cut(s) 153, 435, 1104, 1136
Bst4CI ACNGT 3 cut(s) 326, 580, 951
Bst6I CTCTTC 1 cut(s) 1150
BstACI GRCGYC 1 cut(s) 564
BstAPI GCANNNNNTGC 3 cut(s) 807, 1061, 1070
BstC8I GCNNGC 3 cut(s) 94, 808, 1357
BstDEI CTNAG 3 cut(s) 459, 895, 1413
BstDSI CCRYGG 2 cut(s) 572, 906
BstF5I GGATG 8 cut(s) 989, 1016, 1057, 1149, 1253, 1342, 1359, 1388
BstFNI CGCG 1 cut(s) 829
BstHHI GCGC 3 cut(s) 92, 194, 829
BstKTI GATC 3 cut(s) 69, 135, 634
BstMAI GTCTC 1 cut(s) 940
BstMBI GATC 3 cut(s) 66, 132, 631
BstMCI CGRYCG 1 cut(s) 220
BstMWI GCNNNNNNNGC 9 cut(s) 37, 87, 807, 833, 842, 917, 1061, 1070, 1079
BstNI CCWGG 4 cut(s) 153, 435, 1104, 1136
BstNSI RCATGY 3 cut(s) 144, 810, 1390
BstSCI CCNGG 6 cut(s) 151, 214, 433, 858, 1102, 1134
BstSFI CTRYAG 3 cut(s) 8, 762, 885
BstSLI GKGCMC 1 cut(s) 363
BstUI CGCG 1 cut(s) 829
BstV1I GCAGC 3 cut(s) 260, 1047, 1057
BstV2I GAAGAC 1 cut(s) 897
BsuRI GGCC 6 cut(s) 96, 845, 905, 1102, 1119, 1442
BtgI CCRYGG 2 cut(s) 572, 906
BtsCI GGATG 8 cut(s) 989, 1016, 1057, 1149, 1253, 1342, 1359, 1388
BtsI GCAGTG 1 cut(s) 1099
BtsIMutI CAGTG 2 cut(s) 797, 1099
BveI ACCTGC 2 cut(s) 892, 1285
Cac8I GCNNGC 3 cut(s) 94, 808, 1357
CaiI CAGNNNCTG 1 cut(s) 872
CciI TCATGA 2 cut(s) 312, 649
CfoI GCGC 3 cut(s) 92, 194, 829
Cfr13I GGNCC 3 cut(s) 431, 1118, 1440
CseI GACGC 2 cut(s) 572, 818
Csp6I GTAC 1 cut(s) 449
CspCI CAANNNNNGTGG 2 cut(s) 773, 808
CviQI GTAC 1 cut(s) 449
DdeI CTNAG 3 cut(s) 459, 895, 1413
DpnI GATC 3 cut(s) 68, 134, 633
DpnII GATC 3 cut(s) 66, 132, 631
EaeI YGGCCR 3 cut(s) 843, 903, 1100
Eam1104I CTCTTC 1 cut(s) 1150
EarI CTCTTC 1 cut(s) 1150
EciI GGCGGA 1 cut(s) 697
Eco130I CCWWGG 1 cut(s) 906
Eco147I AGGCCT 1 cut(s) 96
Eco31I GGTCTC 1 cut(s) 940
Eco32I GATATC 1 cut(s) 1141
Eco47I GGWCC 1 cut(s) 431
Eco57I CTGAAG 2 cut(s) 773, 1152
EcoRI GAATTC 1 cut(s) 816
EcoRII CCWGG 4 cut(s) 151, 433, 1102, 1134
EcoRV GATATC 1 cut(s) 1141
EcoT14I CCWWGG 1 cut(s) 906
EcoT22I ATGCAT 2 cut(s) 808, 1388
ErhI CCWWGG 1 cut(s) 906
FalI AAGNNNNNCTT 2 cut(s) 1297, 1329
FaqI GGGAC 1 cut(s) 244
FauI CCCGC 2 cut(s) 411, 515
FauNDI CATATG 1 cut(s) 1374
Fnu4HI GCNGC 5 cut(s) 249, 1012, 1036, 1071, 1100
FokI GGATG 8 cut(s) 976, 1003, 1064, 1136, 1240, 1346, 1349, 1395
Fsp4HI GCNGC 5 cut(s) 249, 1012, 1036, 1071, 1100
FspBI CTAG 4 cut(s) 263, 348, 552, 714
GlaI GCGC 3 cut(s) 91, 193, 828
GluI GCNGC 5 cut(s) 249, 1012, 1036, 1071, 1100
GsaI CCCAGC 1 cut(s) 231
HaeIII GGCC 6 cut(s) 96, 845, 905, 1102, 1119, 1442
HapII CCGG 3 cut(s) 216, 860, 1343
HgaI GACGC 2 cut(s) 572, 818
HhaI GCGC 3 cut(s) 92, 194, 829
Hin1I GRCGYC 1 cut(s) 564
Hin6I GCGC 3 cut(s) 90, 192, 827
HinP1I GCGC 3 cut(s) 90, 192, 827
HincII GTYRAC 1 cut(s) 202
HindII GTYRAC 1 cut(s) 202
HindIII AAGCTT 1 cut(s) 175
HinfI GANTC 3 cut(s) 148, 232, 1310
HpaII CCGG 3 cut(s) 216, 860, 1343
HphI GGTGA 1 cut(s) 1412
Hpy166II GTNNAC 2 cut(s) 202, 1370
Hpy188I TCNGA 2 cut(s) 631, 1171
Hpy188III TCNNGA 6 cut(s) 313, 338, 443, 471, 650, 959
Hpy8I GTNNAC 2 cut(s) 202, 1370
HpyAV CCTTC 5 cut(s) 56, 80, 645, 974, 1343
HpyCH4III ACNGT 3 cut(s) 326, 580, 951
HpyCH4IV ACGT 2 cut(s) 198, 342
HpyF10VI GCNNNNNNNGC 9 cut(s) 37, 87, 807, 833, 842, 917, 1061, 1070, 1079
HpyF3I CTNAG 3 cut(s) 459, 895, 1413
HpySE526I ACGT 2 cut(s) 198, 342
Hsp92I GRCGYC 1 cut(s) 564
HspAI GCGC 3 cut(s) 90, 192, 827
Kzo9I GATC 3 cut(s) 66, 132, 631
LmnI GCTCC 9 cut(s) 296, 460, 662, 1078, 1165, 1192, 1207, 1345, 1352
Lsp1109I GCAGC 3 cut(s) 260, 1047, 1057
LweI GCATC 8 cut(s) 733, 767, 952, 998, 1042, 1327, 1368, 1373
MaeI CTAG 4 cut(s) 263, 348, 552, 714
MaeII ACGT 2 cut(s) 198, 342
MaeIII GTNAC 1 cut(s) 618
MalI GATC 3 cut(s) 68, 134, 633
MbiI CCGCTC 1 cut(s) 1099
MboI GATC 3 cut(s) 66, 132, 631
MboII GAAGA 7 cut(s) 278, 620, 699, 902, 1137, 1305, 1308
MfeI CAATTG 2 cut(s) 1059, 1227
MhlI GDGCHC 1 cut(s) 363
MlsI TGGCCA 2 cut(s) 845, 905
MluCI AATT 6 cut(s) 277, 601, 816, 1059, 1227, 1269
MluNI TGGCCA 2 cut(s) 845, 905
MlyI GAGTC 1 cut(s) 226
MmeI TCCRAC 1 cut(s) 513
Mox20I TGGCCA 2 cut(s) 845, 905
Mph1103I ATGCAT 2 cut(s) 808, 1388
MroXI GAANNNNTTC 1 cut(s) 1309
MscI TGGCCA 2 cut(s) 845, 905
MseI TTAA 5 cut(s) 276, 308, 750, 1287, 1407
MslI CAYNNNNRTG 1 cut(s) 366
Msp20I TGGCCA 2 cut(s) 845, 905
MspA1I CMGCKG 1 cut(s) 1070
MspI CCGG 3 cut(s) 216, 860, 1343
MspR9I CCNGG 6 cut(s) 153, 216, 435, 860, 1104, 1136
MunI CAATTG 2 cut(s) 1059, 1227
MvaI CCWGG 4 cut(s) 153, 435, 1104, 1136
MvnI CGCG 1 cut(s) 829
MwoI GCNNNNNNNGC 9 cut(s) 37, 87, 807, 833, 842, 917, 1061, 1070, 1079
NciI CCSGG 2 cut(s) 216, 860
NcoI CCATGG 1 cut(s) 906
NdeI CATATG 1 cut(s) 1374
NdeII GATC 3 cut(s) 66, 132, 631
NlaIV GGNNCC 3 cut(s) 505, 864, 1209
NsiI ATGCAT 2 cut(s) 808, 1388
NspI RCATGY 3 cut(s) 144, 810, 1390
PaeI GCATGC 1 cut(s) 810
PagI TCATGA 2 cut(s) 312, 649
PaqCI CACCTGC 1 cut(s) 892
PceI AGGCCT 1 cut(s) 96
PcsI WCGNNNNNNNCGW 1 cut(s) 217
PdmI GAANNNNTTC 1 cut(s) 1309
PfeI GAWTC 2 cut(s) 148, 1310
PfoI TCCNGGA 2 cut(s) 433, 1134
PkrI GCNGC 5 cut(s) 250, 1013, 1037, 1072, 1101
PleI GAGTC 1 cut(s) 226
PpsI GAGTC 1 cut(s) 226
PsiI TTATAA 1 cut(s) 162
Psp6I CCWGG 4 cut(s) 151, 433, 1102, 1134
PspFI CCCAGC 1 cut(s) 227
PspGI CCWGG 4 cut(s) 151, 433, 1102, 1134
PspN4I GGNNCC 3 cut(s) 505, 864, 1209
PspPI GGNCC 3 cut(s) 431, 1118, 1440
PsrI GAACNNNNNNTAC 2 cut(s) 603, 635
PstI CTGCAG 2 cut(s) 766, 889
PstNI CAGNNNCTG 1 cut(s) 872
PvuII CAGCTG 1 cut(s) 1070
RsaI GTAC 1 cut(s) 450
RsaNI GTAC 1 cut(s) 449
RseI CAYNNNNRTG 1 cut(s) 366
SaqAI TTAA 5 cut(s) 276, 308, 750, 1287, 1407
SatI GCNGC 5 cut(s) 249, 1012, 1036, 1071, 1100
Sau3AI GATC 3 cut(s) 66, 132, 631
Sau96I GGNCC 3 cut(s) 431, 1118, 1440
ScaI AGTACT 1 cut(s) 450
SchI GAGTC 1 cut(s) 226
ScrFI CCNGG 6 cut(s) 153, 216, 435, 860, 1104, 1136
SduI GDGCHC 1 cut(s) 363
SfaNI GCATC 8 cut(s) 733, 767, 952, 998, 1042, 1327, 1368, 1373
SfcI CTRYAG 3 cut(s) 8, 762, 885
SinI GGWCC 1 cut(s) 431
SmiMI CAYNNNNRTG 1 cut(s) 366
SmlI CTYRAG 1 cut(s) 98
SmoI CTYRAG 1 cut(s) 98
SphI GCATGC 1 cut(s) 810
Sse9I AATT 6 cut(s) 277, 601, 816, 1059, 1227, 1269
SseBI AGGCCT 1 cut(s) 96
SsiI CCGC 5 cut(s) 418, 508, 682, 1011, 1099
SspMI CTAG 4 cut(s) 263, 348, 552, 714
StuI AGGCCT 1 cut(s) 96
StyD4I CCNGG 6 cut(s) 151, 214, 433, 858, 1102, 1134
StyI CCWWGG 1 cut(s) 906
TaaI ACNGT 3 cut(s) 326, 580, 951
TaiI ACGT 2 cut(s) 201, 345
TaqI TCGA 1 cut(s) 60
TasI AATT 6 cut(s) 277, 601, 816, 1059, 1227, 1269
TatI WGTACW 1 cut(s) 448
TauI GCSGC 2 cut(s) 1014, 1102
TfiI GAWTC 2 cut(s) 148, 1310
Tru1I TTAA 5 cut(s) 276, 308, 750, 1287, 1407
Tru9I TTAA 5 cut(s) 276, 308, 750, 1287, 1407
TscAI CASTG 2 cut(s) 797, 1099
TseI GCWGC 3 cut(s) 248, 1035, 1070
TspDTI ATGAA 9 cut(s) 161, 329, 638, 783, 993, 1040, 1125, 1305, 1308
TspGWI ACGGA 4 cut(s) 365, 589, 1142, 1212
TspRI CASTG 2 cut(s) 797, 1099
VpaK11BI GGWCC 1 cut(s) 431
XapI RAATTY 1 cut(s) 816
XceI RCATGY 3 cut(s) 144, 810, 1390
XmnI GAANNNNTTC 1 cut(s) 1309
XspI CTAG 4 cut(s) 263, 348, 552, 714
ZrmI AGTACT 1 cut(s) 450
Zsp2I ATGCAT 2 cut(s) 808, 1388
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.