Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0002680

Physical Location & Seq

Genomic Coordinates Forward (+)

7164961 .. 7170215

Gene Structure 5255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG044200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1494 bp

ATGGGGCTTCAGCAATCCAAGGAGGAGCTTCTCTACGACCAAGTCAGCTATGGCAACGTCGAAGGGATCAAATCCCTTCGCGCCCAAGGCGCAGGCCTCGAGTGGATTGATAGGGAGGGCAAGACCCCTTTGATTGTGGCTTGTATGAATCCTGGGCATACCAATGTTGCCAAGACCTTGATTGATCTCGGTGCAAATGTCAATGCTTATCGCCCCGGTCGGCATGCCGGGACTCCTCTGCATCATGCAGCTAAAAGAGGGCTCGAAGAGACTGTCAATTTACTTCTTTCGCGCGGAGCGAATGCGTTGATCATGAATGATGACTGTCAGAGCCCTCTTGATGTTGCTAGAGCGAAAGGGCAGAGTGCTGTTGTTCGCGCAATTGAGAGGCATATTTGCTTGTTCTCGGGTTGGTTGCGCGAGTTGTATGGTCCTGGATTTCTGGAATTACTTGCTCCGCAGTTGGTTTCAAGAAAAGTTTGGGTTGTTGTTTTGCCATGTGGTTCCCGCAAACCTACCAAGCCTTACAAGTTGGAGCTTGCCATATATTCTAGTATGCAGGATGCTCAACCACGTACAGTTATTGGATTGTGGAAAGTCAATCTGGATGAACCAAAATCTCACCTGTCTGATCCTTCGGTTATAATTCGTGATATCTCCACAATCCCACGAGGCAGGAGGCGGAGACACAGGCATCAAACACTTAGGCAAGCACGCATTAGACTTGCATCTGCAAATGAAAATGACAAGCAACAACTTCAGCAGTTTAGCAATGCATGCAAAGGAATTCCACAGGCACGACCTGCATTTTTGGGTAATAACAATCCAGCAACTGCACCACCAGCAACTGCAGAAGATATGGAGTTGGCCGTGGCTCTCAGCGCCTCCCTTCATTCTGCTTCACAGGAGAGACCACCCTTTCCGGATGCACACCCAACCAATGAATCAATTGCCTCAAGTAGCTCCGGTACCTCTACAAATGCTTCTAACTTGAATGGTTGGAGTACGTCCACAAACACTGGCAGCTACAACGGTTGGGATGCAACAATTGCAGCTGCTTCTCCAAAAGTAAGTAGCAGCGATTGGTCAGGGGTTCAAACTGGCCCAGTTGGTGACTCAAGTGGACATGCAAACATCCAACAAATCTCTCCTACCCAAACAACTCCTACCTCAGTTCCACCCCCGTCAGCTCCACCAGTTTTAGATGAAAGTCACGATGAATATCCTATCCACTATCCATCAATTGATGACAGCCCTATTGATCTATCAAACCCAACTGCTGAAAGTATACCTCCTACAGTCGATGAAAAGAAAGGTGATGGGGCCTCTTCTTCATGTGTGATTTGTTTAGATGCACCAGTTGAAGGAGCTTGCATCCCATGTGGCCATATGGCTGGATGCATGTCTTGTTTGACTGAGGTTAAAGGTAAGAAATGGGGCTGTCCTGTTTGCCGAGCCAAGATTGAACAGGTTGTAAGGCTCTATGCTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Methyltransf_29 zf-C3HC4_3

Protein Analysis

497

Amino Acids

53.35

Weight (kDa)

7.2

Isoelectric Point (pI)

52.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	15 - 69	1.7e-06	Ankyrin repeats (3 copies)
zf-C3HC4_3	PF13920	444 - 491	4.2e-13	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002680)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23280 AT3G23280 AT4G14365
fragaria_vesca	FvH4_4g03720 FvH4_4g03720 FvH4_4g03730
malus_domestica	MD05G1075400.v1.1 MD13G1214800.v1.1 MD16G1219900.v1.1
prunus_persica	Prupe.1G040200_v2.0.a1 Prupe.1G040200_v2.0.a1
pyrus_communis	pycom13g18820 pycom16g18320
rosa_chinensis	RchiOBHm_Chr4g0393331 RchiOBHm_Chr4g0393371
rosa_laevigata	RLG00000009750 RLG00000009758 RLG00000009759 RLG00000009763
rosa_multiflora	Rmu_sc0008931.1_g000009
rosa_roxburghii	Rroxscaffold_3G00224380 Rroxscaffold_5G00338320 Rroxscaffold_5G00338340 Rroxscaffold_5G00338360 Rroxscaffold_5G00338390
rosa_rugosa	Rorug04G0001300 Rorug04G0001500 Rorug04G0001800
rosa_samantha	Rh4AG046800 Rh4AG047000 Rh4AG047300 Rh4AG047400 Rh4BG042400 Rh4BG042600 Rh4CG049900 Rh4CG050000 Rh4DG044200 Rh5AG327600
rosa_wichuraiana	Rw4G003700 Rw4G003720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	644
Acc36I	ACCTGC	1 cut(s)	811
Acc65I	GGTACC	1 cut(s)	968
AccB1I	GGYRCC	1 cut(s)	968
AccI	GTMKAC	1 cut(s)	1288
AccII	CGCG	5 cut(s)	81, 292, 294, 378, 420
AccIII	TCCGGA	1 cut(s)	922
AciI	CCGC	4 cut(s)	294, 458, 508, 682
AclWI	GGATC	2 cut(s)	74, 626
AcoI	YGGCCR	2 cut(s)	867, 1384
AcsI	RAATTY	1 cut(s)	786
AcuI	CTGAAG	1 cut(s)	743
AfaI	GTAC	3 cut(s)	577, 970, 1006
AfiI	CCNNNNNNNGG	1 cut(s)	1364
AgsI	TTSAA	5 cut(s)	471, 994, 1097, 1364, 1466
AjnI	CCWGG	2 cut(s)	151, 433
AluBI	AGCT	9 cut(s)	28, 48, 251, 538, 963, 1026, 1055, 1190, 1370
AluI	AGCT	9 cut(s)	28, 48, 251, 538, 963, 1026, 1055, 1190, 1370
Alw26I	GTCTC	3 cut(s)	263, 679, 904
AlwI	GGATC	2 cut(s)	74, 626
AlwNI	CAGNNNCTG	2 cut(s)	833, 848
Ama87I	CYCGRG	2 cut(s)	98, 406
Aor13HI	TCCGGA	1 cut(s)	922
AoxI	GGCC	5 cut(s)	94, 867, 1102, 1323, 1384
ApeKI	GCWGC	5 cut(s)	248, 1023, 1052, 1055, 1077
ApoI	RAATTY	1 cut(s)	786
ArsI	GACNNNNNNTTYG	2 cut(s)	258, 290
Asp718I	GGTACC	1 cut(s)	968
AspLEI	GCGC	6 cut(s)	83, 92, 294, 380, 420, 884
AspS9I	GGNCC	3 cut(s)	431, 1103, 1323
AsuC2I	CCSGG	2 cut(s)	216, 229
AsuHPI	GGTGA	3 cut(s)	614, 1124, 1328
AvaI	CYCGRG	2 cut(s)	98, 406
AvaII	GGWCC	1 cut(s)	431
BalI	TGGCCA	1 cut(s)	1386
BanI	GGYRCC	1 cut(s)	968
BanII	GRGCYC	2 cut(s)	264, 335
BauI	CACGAG	1 cut(s)	669
BbvI	GCAGC	5 cut(s)	260, 1035, 1042, 1064, 1089
BccI	CCATC	2 cut(s)	1246, 1313
BceAI	ACGGC	1 cut(s)	854
BciT130I	CCWGG	2 cut(s)	153, 435
BclI	TGATCA	1 cut(s)	309
BcnI	CCSGG	2 cut(s)	216, 229
BcoDI	GTCTC	3 cut(s)	263, 679, 904
BfaI	CTAG	2 cut(s)	348, 552
BfmI	CTRYAG	2 cut(s)	849, 1296
BfoI	RGCGCY	1 cut(s)	885
BfuAI	ACCTGC	1 cut(s)	811
BisI	GCNGC	5 cut(s)	249, 1024, 1053, 1056, 1078
BlsI	GCNGC	5 cut(s)	250, 1025, 1054, 1057, 1079
Bme1390I	CCNGG	4 cut(s)	153, 216, 229, 435
Bme18I	GGWCC	1 cut(s)	431
BmeT110I	CYCGRG	2 cut(s)	98, 406
BmgT120I	GGNCC	3 cut(s)	431, 1103, 1323
BmiI	GGNNCC	3 cut(s)	505, 970, 1324
BmrFI	CCNGG	4 cut(s)	153, 216, 229, 435
BmrI	ACTGGG	1 cut(s)	1100
BmsI	GCATC	9 cut(s)	250, 553, 703, 737, 916, 1030, 1342, 1383, 1388
BmuI	ACTGGG	1 cut(s)	1100
BpuEI	CTTGAG	2 cut(s)	940, 1102
BpuMI	CCSGG	2 cut(s)	216, 229
BsaAI	YACGTR	1 cut(s)	575
BsaBI	GATNNNNATC	1 cut(s)	1221
BsaI	GGTCTC	1 cut(s)	904
BsaJI	CCNNGG	5 cut(s)	18, 85, 152, 214, 870
BsaWI	WCCGGW	2 cut(s)	922, 965
Bsc4I	CCNNNNNNNGG	1 cut(s)	1364
Bse1I	ACTGG	5 cut(s)	1024, 1105, 1106, 1196, 1358
Bse3DI	GCAATG	1 cut(s)	778
Bse8I	GATNNNNATC	1 cut(s)	1221
BseAI	TCCGGA	1 cut(s)	922
BseBI	CCWGG	2 cut(s)	153, 435
BseDI	CCNNGG	5 cut(s)	18, 85, 152, 214, 870
BseGI	GGATG	7 cut(s)	568, 613, 931, 1045, 1134, 1374, 1403
BseJI	GATNNNNATC	1 cut(s)	1221
BseLI	CCNNNNNNNGG	1 cut(s)	1364
BseMI	GCAATG	1 cut(s)	778
BseMII	CTCAG	3 cut(s)	892, 1185, 1407
BseNI	ACTGG	5 cut(s)	1024, 1105, 1106, 1196, 1358
BseRI	GAGGAG	2 cut(s)	38, 225
BseXI	GCAGC	5 cut(s)	260, 1035, 1042, 1064, 1089
BsgI	GTGCAG	1 cut(s)	819
Bsh1236I	CGCG	5 cut(s)	81, 292, 294, 378, 420
Bsh1285I	CGRYCG	1 cut(s)	220
BshFI	GGCC	5 cut(s)	96, 869, 1104, 1325, 1386
BshNI	GGYRCC	1 cut(s)	968
BsiEI	CGRYCG	1 cut(s)	220
BsiHKCI	CYCGRG	2 cut(s)	98, 406
BsiSI	CCGG	4 cut(s)	216, 228, 923, 966
BslFI	GGGAC	1 cut(s)	244
BslI	CCNNNNNNNGG	1 cut(s)	1364
BsmAI	GTCTC	3 cut(s)	263, 679, 904
BsmFI	GGGAC	1 cut(s)	244
BsmI	GAATGC	1 cut(s)	307
BsnI	GGCC	5 cut(s)	96, 869, 1104, 1325, 1386
Bso31I	GGTCTC	1 cut(s)	904
BsoBI	CYCGRG	2 cut(s)	98, 406
Bsp1286I	GDGCHC	2 cut(s)	264, 335
Bsp13I	TCCGGA	1 cut(s)	922
Bsp143I	GATC	5 cut(s)	66, 184, 309, 631, 1261
BspACI	CCGC	4 cut(s)	294, 458, 508, 682
BspANI	GGCC	5 cut(s)	96, 869, 1104, 1325, 1386
BspCNI	CTCAG	3 cut(s)	891, 1184, 1408
BspEI	TCCGGA	1 cut(s)	922
BspFNI	CGCG	5 cut(s)	81, 292, 294, 378, 420
BspHI	TCATGA	1 cut(s)	312
BspLI	GGNNCC	3 cut(s)	505, 970, 1324
BspMAI	CTGCAG	1 cut(s)	853
BspMI	ACCTGC	1 cut(s)	811
BspPI	GGATC	2 cut(s)	74, 626
BspT107I	GGYRCC	1 cut(s)	968
BspTNI	GGTCTC	1 cut(s)	904
BsrDI	GCAATG	1 cut(s)	778
BsrI	ACTGG	5 cut(s)	1024, 1105, 1106, 1196, 1358
BssECI	CCNNGG	5 cut(s)	18, 85, 152, 214, 870
BssMI	GATC	5 cut(s)	66, 184, 309, 631, 1261
BssNAI	GTATAC	1 cut(s)	1289
BssSI	CACGAG	1 cut(s)	669
BssT1I	CCWWGG	2 cut(s)	18, 85
Bst1107I	GTATAC	1 cut(s)	1289
Bst2BI	CACGAG	1 cut(s)	669
Bst2UI	CCWGG	2 cut(s)	153, 435
Bst4CI	ACNGT	5 cut(s)	274, 326, 580, 1034, 1300
Bst6I	CTCTTC	2 cut(s)	261, 1333
BstAPI	GCANNNNNTGC	3 cut(s)	777, 803, 1049
BstBAI	YACGTR	1 cut(s)	575
BstC8I	GCNNGC	7 cut(s)	94, 225, 540, 711, 715, 778, 1372
BstDEI	CTNAG	4 cut(s)	704, 878, 1171, 1416
BstDSI	CCRYGG	1 cut(s)	870
BstF5I	GGATG	7 cut(s)	568, 613, 931, 1045, 1134, 1374, 1403
BstFNI	CGCG	5 cut(s)	81, 292, 294, 378, 420
BstH2I	RGCGCY	1 cut(s)	885
BstHHI	GCGC	6 cut(s)	83, 92, 294, 380, 420, 884
BstKTI	GATC	5 cut(s)	69, 187, 312, 634, 1264
BstMAI	GTCTC	3 cut(s)	263, 679, 904
BstMBI	GATC	5 cut(s)	66, 184, 309, 631, 1261
BstMCI	CGRYCG	1 cut(s)	220
BstMWI	GCNNNNNNNGC	7 cut(s)	87, 89, 777, 803, 842, 881, 1049
BstNI	CCWGG	2 cut(s)	153, 435
BstNSI	RCATGY	4 cut(s)	227, 780, 1130, 1405
BstSCI	CCNGG	4 cut(s)	151, 214, 227, 433
BstSFI	CTRYAG	2 cut(s)	849, 1296
BstUI	CGCG	5 cut(s)	81, 292, 294, 378, 420
BstV1I	GCAGC	5 cut(s)	260, 1035, 1042, 1064, 1089
BstXI	CCANNNNNNTGG	1 cut(s)	1394
BstZ17I	GTATAC	1 cut(s)	1289
BsuRI	GGCC	5 cut(s)	96, 869, 1104, 1325, 1386
BtgI	CCRYGG	1 cut(s)	870
BtsCI	GGATG	7 cut(s)	568, 613, 931, 1045, 1134, 1374, 1403
BtsIMutI	CAGTG	1 cut(s)	1017
BveI	ACCTGC	1 cut(s)	811
Cac8I	GCNNGC	7 cut(s)	94, 225, 540, 711, 715, 778, 1372
CaiI	CAGNNNCTG	2 cut(s)	833, 848
CciI	TCATGA	1 cut(s)	312
CfoI	GCGC	6 cut(s)	83, 92, 294, 380, 420, 884
Cfr13I	GGNCC	3 cut(s)	431, 1103, 1323
Csp6I	GTAC	3 cut(s)	576, 969, 1005
CviAII	CATG	9 cut(s)	224, 245, 313, 498, 777, 1127, 1335, 1380, 1402
CviQI	GTAC	3 cut(s)	576, 969, 1005
DdeI	CTNAG	4 cut(s)	704, 878, 1171, 1416
DpnI	GATC	5 cut(s)	68, 186, 311, 633, 1263
DpnII	GATC	5 cut(s)	66, 184, 309, 631, 1261
EaeI	YGGCCR	2 cut(s)	867, 1384
Eam1104I	CTCTTC	2 cut(s)	261, 1333
EarI	CTCTTC	2 cut(s)	261, 1333
EciI	GGCGGA	1 cut(s)	697
Eco130I	CCWWGG	2 cut(s)	18, 85
Eco147I	AGGCCT	1 cut(s)	96
Eco24I	GRGCYC	2 cut(s)	264, 335
Eco31I	GGTCTC	1 cut(s)	904
Eco32I	GATATC	1 cut(s)	655
Eco47I	GGWCC	1 cut(s)	431
Eco57I	CTGAAG	1 cut(s)	743
Eco88I	CYCGRG	2 cut(s)	98, 406
EcoO109I	RGGNCCY	1 cut(s)	1323
EcoRI	GAATTC	1 cut(s)	786
EcoRII	CCWGG	2 cut(s)	151, 433
EcoRV	GATATC	1 cut(s)	655
EcoT14I	CCWWGG	2 cut(s)	18, 85
EcoT22I	ATGCAT	2 cut(s)	778, 1403
EcoT38I	GRGCYC	2 cut(s)	264, 335
ErhI	CCWWGG	2 cut(s)	18, 85
FaeI	CATG	9 cut(s)	227, 248, 316, 501, 780, 1130, 1338, 1383, 1405
FaqI	GGGAC	1 cut(s)	244
FatI	CATG	9 cut(s)	223, 244, 312, 497, 776, 1126, 1334, 1379, 1401
FauI	CCCGC	1 cut(s)	515
FauNDI	CATATG	1 cut(s)	1389
FbaI	TGATCA	1 cut(s)	309
FblI	GTMKAC	1 cut(s)	1288
Fnu4HI	GCNGC	5 cut(s)	249, 1024, 1053, 1056, 1078
FokI	GGATG	7 cut(s)	575, 620, 938, 1052, 1121, 1361, 1410
FriOI	GRGCYC	2 cut(s)	264, 335
Fsp4HI	GCNGC	5 cut(s)	249, 1024, 1053, 1056, 1078
FspBI	CTAG	2 cut(s)	348, 552
GlaI	GCGC	6 cut(s)	82, 91, 293, 379, 419, 883
GluI	GCNGC	5 cut(s)	249, 1024, 1053, 1056, 1078
HaeII	RGCGCY	1 cut(s)	885
HaeIII	GGCC	5 cut(s)	96, 869, 1104, 1325, 1386
HapII	CCGG	4 cut(s)	216, 228, 923, 966
HhaI	GCGC	6 cut(s)	83, 92, 294, 380, 420, 884
Hin1II	CATG	9 cut(s)	227, 248, 316, 501, 780, 1130, 1338, 1383, 1405
Hin6I	GCGC	6 cut(s)	81, 90, 292, 378, 418, 882
HinP1I	GCGC	6 cut(s)	81, 90, 292, 378, 418, 882
HinfI	GANTC	4 cut(s)	148, 232, 944, 1115
HpaII	CCGG	4 cut(s)	216, 228, 923, 966
HphI	GGTGA	3 cut(s)	614, 1124, 1328
Hpy166II	GTNNAC	3 cut(s)	1011, 1124, 1289
Hpy188I	TCNGA	2 cut(s)	330, 631
Hpy188III	TCNNGA	8 cut(s)	313, 338, 443, 471, 605, 650, 923, 1214
Hpy8I	GTNNAC	3 cut(s)	1011, 1124, 1289
Hpy99I	CGWCG	1 cut(s)	62
HpyAV	CCTTC	5 cut(s)	56, 86, 645, 899, 1358
HpyCH4III	ACNGT	5 cut(s)	274, 326, 580, 1034, 1300
HpyCH4IV	ACGT	3 cut(s)	57, 574, 1007
HpyF10VI	GCNNNNNNNGC	7 cut(s)	87, 89, 777, 803, 842, 881, 1049
HpyF3I	CTNAG	4 cut(s)	704, 878, 1171, 1416
HpySE526I	ACGT	3 cut(s)	57, 574, 1007
Hsp92II	CATG	9 cut(s)	227, 248, 316, 501, 780, 1130, 1338, 1383, 1405
HspAI	GCGC	6 cut(s)	81, 90, 292, 378, 418, 882
Kpn2I	TCCGGA	1 cut(s)	922
KpnI	GGTACC	1 cut(s)	972
Ksp22I	TGATCA	1 cut(s)	309
Kzo9I	GATC	5 cut(s)	66, 184, 309, 631, 1261
LmnI	GCTCC	7 cut(s)	25, 296, 460, 535, 968, 1195, 1367
Lsp1109I	GCAGC	5 cut(s)	260, 1035, 1042, 1064, 1089
LweI	GCATC	9 cut(s)	250, 553, 703, 737, 916, 1030, 1342, 1383, 1388
MaeI	CTAG	2 cut(s)	348, 552
MaeII	ACGT	3 cut(s)	57, 574, 1007
MaeIII	GTNAC	2 cut(s)	1112, 1211
MalI	GATC	5 cut(s)	68, 186, 311, 633, 1263
MboI	GATC	5 cut(s)	66, 184, 309, 631, 1261
MboII	GAAGA	4 cut(s)	278, 866, 1320, 1323
MfeI	CAATTG	4 cut(s)	381, 948, 1047, 1242
MhlI	GDGCHC	2 cut(s)	264, 335
MlsI	TGGCCA	1 cut(s)	1386
MluCI	AATT	8 cut(s)	277, 381, 446, 645, 786, 948, 1047, 1242
MluNI	TGGCCA	1 cut(s)	1386
MlyI	GAGTC	2 cut(s)	226, 1109
MmeI	TCCRAC	3 cut(s)	513, 980, 1162
Mox20I	TGGCCA	1 cut(s)	1386
Mph1103I	ATGCAT	2 cut(s)	778, 1403
MroI	TCCGGA	1 cut(s)	922
MscI	TGGCCA	1 cut(s)	1386
MseI	TTAA	1 cut(s)	1422
MslI	CAYNNNNRTG	1 cut(s)	162
Msp20I	TGGCCA	1 cut(s)	1386
MspA1I	CMGCKG	1 cut(s)	1055
MspI	CCGG	4 cut(s)	216, 228, 923, 966
MspR9I	CCNGG	4 cut(s)	153, 216, 229, 435
MunI	CAATTG	4 cut(s)	381, 948, 1047, 1242
Mva1269I	GAATGC	1 cut(s)	307
MvaI	CCWGG	2 cut(s)	153, 435
MvnI	CGCG	5 cut(s)	81, 292, 294, 378, 420
MwoI	GCNNNNNNNGC	7 cut(s)	87, 89, 777, 803, 842, 881, 1049
NciI	CCSGG	2 cut(s)	216, 229
NdeI	CATATG	1 cut(s)	1389
NdeII	GATC	5 cut(s)	66, 184, 309, 631, 1261
NlaIII	CATG	9 cut(s)	227, 248, 316, 501, 780, 1130, 1338, 1383, 1405
NlaIV	GGNNCC	3 cut(s)	505, 970, 1324
NmeAIII	GCCGAG	1 cut(s)	1478
NmuCI	GTSAC	2 cut(s)	1112, 1211
NsiI	ATGCAT	2 cut(s)	778, 1403
NspI	RCATGY	4 cut(s)	227, 780, 1130, 1405
PaeI	GCATGC	2 cut(s)	227, 780
PaeR7I	CTCGAG	1 cut(s)	98
PagI	TCATGA	1 cut(s)	312
PceI	AGGCCT	1 cut(s)	96
PcsI	WCGNNNNNNNCGW	1 cut(s)	296
PctI	GAATGC	1 cut(s)	307
PfeI	GAWTC	2 cut(s)	148, 944
PflFI	GACNNNGTC	1 cut(s)	41
PfoI	TCCNGGA	1 cut(s)	433
PkrI	GCNGC	5 cut(s)	250, 1025, 1054, 1057, 1079
PleI	GAGTC	2 cut(s)	226, 1109
PpsI	GAGTC	2 cut(s)	226, 1109
Ppu21I	YACGTR	1 cut(s)	575
PsiI	TTATAA	1 cut(s)	644
Psp6I	CCWGG	2 cut(s)	151, 433
PspGI	CCWGG	2 cut(s)	151, 433
PspN4I	GGNNCC	3 cut(s)	505, 970, 1324
PspPI	GGNCC	3 cut(s)	431, 1103, 1323
PspXI	VCTCGAGB	1 cut(s)	98
PstI	CTGCAG	1 cut(s)	853
PstNI	CAGNNNCTG	2 cut(s)	833, 848
PsyI	GACNNNGTC	1 cut(s)	41
PvuII	CAGCTG	1 cut(s)	1055
RsaI	GTAC	3 cut(s)	577, 970, 1006
RsaNI	GTAC	3 cut(s)	576, 969, 1005
RseI	CAYNNNNRTG	1 cut(s)	162
SaqAI	TTAA	1 cut(s)	1422
SatI	GCNGC	5 cut(s)	249, 1024, 1053, 1056, 1078
Sau3AI	GATC	5 cut(s)	66, 184, 309, 631, 1261
Sau96I	GGNCC	3 cut(s)	431, 1103, 1323
SchI	GAGTC	2 cut(s)	226, 1109
ScrFI	CCNGG	4 cut(s)	153, 216, 229, 435
SduI	GDGCHC	2 cut(s)	264, 335
SfaNI	GCATC	9 cut(s)	250, 553, 703, 737, 916, 1030, 1342, 1383, 1388
SfcI	CTRYAG	2 cut(s)	849, 1296
Sfr274I	CTCGAG	1 cut(s)	98
SinI	GGWCC	1 cut(s)	431
SlaI	CTCGAG	1 cut(s)	98
SmiMI	CAYNNNNRTG	1 cut(s)	162
SmlI	CTYRAG	3 cut(s)	98, 955, 1117
SmoI	CTYRAG	3 cut(s)	98, 955, 1117
SphI	GCATGC	2 cut(s)	227, 780
Sse9I	AATT	8 cut(s)	277, 381, 446, 645, 786, 948, 1047, 1242
SseBI	AGGCCT	1 cut(s)	96
SsiI	CCGC	4 cut(s)	294, 458, 508, 682
SspMI	CTAG	2 cut(s)	348, 552
StuI	AGGCCT	1 cut(s)	96
StyD4I	CCNGG	4 cut(s)	151, 214, 227, 433
StyI	CCWWGG	2 cut(s)	18, 85
TaaI	ACNGT	5 cut(s)	274, 326, 580, 1034, 1300
TaiI	ACGT	3 cut(s)	60, 577, 1010
TaqI	TCGA	4 cut(s)	60, 99, 264, 1302
TasI	AATT	8 cut(s)	277, 381, 446, 645, 786, 948, 1047, 1242
TfiI	GAWTC	2 cut(s)	148, 944
Tru1I	TTAA	1 cut(s)	1422
Tru9I	TTAA	1 cut(s)	1422
TscAI	CASTG	1 cut(s)	1024
TseFI	GTSAC	2 cut(s)	1112, 1211
TseI	GCWGC	5 cut(s)	248, 1023, 1052, 1055, 1077
Tsp45I	GTSAC	2 cut(s)	1112, 1211
TspRI	CASTG	1 cut(s)	1024
Tth111I	GACNNNGTC	1 cut(s)	41
VpaK11BI	GGWCC	1 cut(s)	431
XapI	RAATTY	1 cut(s)	786
XceI	RCATGY	4 cut(s)	227, 780, 1130, 1405
XcmI	CCANNNNNNNNNTGG	1 cut(s)	47
XhoI	CTCGAG	1 cut(s)	98
XmiI	GTMKAC	1 cut(s)	1288
XspI	CTAG	2 cut(s)	348, 552
Zsp2I	ATGCAT	2 cut(s)	778, 1403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.