MD13G1214800.v1.1

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
Physical Location & Seq
Forward (+)
20339588 .. 20345669
6082 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1214800.v1.1.491

Sequence Viewer

Length: 1428 bp
ATGGGGCAGCAGCAATCGAAAGACGAACTGCTCTATCAGCAAGTCAGCTATGGAAACGTCGAAGGGATTAAAGCCCTCTGCAGAGATGGTGCAGGCCTTGAGTGGATTGATAGAGAGGGGAAAACCCCTTTGATCGTGGCCTGTATAAATCCTGGGCTGTATAATGTTGCAAAAAGCTTGATTGAACTTGGTGCAAACGTTAACGCCTATCGCCCCGGTCGTCATGCTGGGACTCCTCTACATCATGCAGCTAAAAGAGGCCTAGAAAACGTCGTTAATTTACTTCTTTCGCATGGAGCAAATGCTTTAATCATGAACGATGACTGTCAAAGTCCTCTTGACATTGCTAGGGCGAAAGGGCACATGAATGTTGTCCGTGCAATTGAGAGGCATATTTGCTTATTCTCTGGTTGGTTGCGGGAGTTTTATGGTCCTGGATTTCTTGGAGTACTTGCTCCGCAGTTGGTTTCAAGAAAAGTTTGGGTTGTTGTTTTGCCATGTAGTTCCCGGAAACCCACCAAGCCTTTCAAGTTGGAGCTTGCCATTTACCCTAACATGCAGGATGCCAAACCGCGAACAGTTATTGCATTGTGGAAAGTCAATCTGGAAGAACCAAAGTTACACCAGTCTGATCCATCAGTTGTGATTCATGATAACTCCACAAAAACACGCATCAAACTTGCAGCTGCAGTTGAGAATGACAAGCAACAACTTCAGTTGTTTTGCAATGCATGCAAAGGAATACCACAGGCTTGTCCTGCGTTTTTGGGTAACAACCAACCCCCGGTTGCTCCAGCAAGTGCACCACCAGCTGCAGAAGATTTAGAGTTGGCCATGGCTATTAGTGCCTCCATGCAGTCTGCTTTGCAGGAGAGACCATCCTTTCCTAATCCGCACCCTACCTATGAAGCAAGTTCATCCAGTAGTGATAATGGTTGGGCCGGAGCCTCCACAAGAACTGACAGTTACAATGGTGGTGGTGCACCAACTGCAGCTGCTGCTTCAAAAGTAAGTAGCGGCGAGTGGTCAGGGACTCAGAGTAATGAAGTTGGAGAGTCATCTCAGCAGGTGGAAATCCAGGATACCTCTTCCGTCCAAACAGCTCCTACTTCAGATATAATCCCATCAGCCCCACCGGTTGCAGATGATAGTCTAGATGCAGCTCCTGTTCACTATCCATCAATTGATTTCAGTCCTATTGATATCCCATCCCCAAGCCTTGAAAGCACACCTGCTAAAATTGATGAGAAGAAAGGTGAAAGCGGTTCATGCGTGATTTGTTTGGATGCTCCAGCTGAAGGAGCTTGCATCCCATGTGGACATATGGCTGGATGCATGTCCTGTTTGAAGGAGATTACAGGTAAGAAATGGGGTTGCCCCGTCTGTCGAGCCAAGATAGACCAAGTTATAAGGCTTTATGCTGTGTGA

Protein Analysis

476

Amino Acids

50.66

Weight (kDa)

6.02

Isoelectric Point (pI)

50.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 8 - 69 9.3e-07 Ankyrin repeats (3 copies)
Ank_5 PF13857 60 - 116 2.1e-06 Ankyrin repeats (many copies)
Ank_2 PF12796 78 - 127 9.9e-06 Ankyrin repeats (3 copies)
zf-C3HC4_3 PF13920 421 - 469 9.8e-14 Zinc finger, C3HC4 type (RING finger)
Prok-RING_4 PF14447 424 - 469 9.8e-06 Prokaryotic RING finger family 4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1409
AarI CACCTGC 2 cut(s) 1057, 1240
Acc36I ACCTGC 2 cut(s) 1057, 1240
AccII CGCG 1 cut(s) 574
AciI CCGC 6 cut(s) 418, 458, 572, 893, 1017, 1263
AclI AACGTT 1 cut(s) 198
AclWI GGATC 1 cut(s) 626
AcoI YGGCCR 1 cut(s) 831
AcuI CTGAAG 3 cut(s) 698, 1095, 1317
AfaI GTAC 1 cut(s) 450
AfiI CCNNNNNNNGG 2 cut(s) 784, 1298
AgeI ACCGGT 1 cut(s) 1135
AgsI TTSAA 6 cut(s) 185, 471, 529, 1005, 1223, 1348
AjnI CCWGG 3 cut(s) 151, 433, 1077
Alw21I GWGCWC 2 cut(s) 805, 985
Alw26I GTCTC 1 cut(s) 868
Alw44I GTGCAC 2 cut(s) 801, 981
AlwI GGATC 1 cut(s) 626
AlwNI CAGNNNCTG 2 cut(s) 998, 1166
AoxI GGCC 5 cut(s) 94, 138, 259, 831, 939
ApaLI GTGCAC 2 cut(s) 801, 981
AsiGI ACCGGT 1 cut(s) 1135
AspS9I GGNCC 2 cut(s) 431, 939
AsuC2I CCSGG 3 cut(s) 216, 508, 785
AsuHPI GGTGA 1 cut(s) 1268
AvaII GGWCC 1 cut(s) 431
BaeGI GKGCMC 3 cut(s) 363, 805, 985
BalI TGGCCA 1 cut(s) 833
Bbv12I GWGCWC 2 cut(s) 805, 985
BccI CCATC 6 cut(s) 80, 643, 886, 1132, 1186, 1216
BciT130I CCWGG 3 cut(s) 153, 435, 1079
BciVI GTATCC 1 cut(s) 1075
BcnI CCSGG 3 cut(s) 216, 508, 785
BcoDI GTCTC 1 cut(s) 868
BfaI CTAG 3 cut(s) 263, 348, 1154
BfmI CTRYAG 4 cut(s) 79, 687, 813, 990
BfuAI ACCTGC 2 cut(s) 1057, 1240
BfuI GTATCC 1 cut(s) 1075
BmcAI AGTACT 1 cut(s) 450
Bme1390I CCNGG 6 cut(s) 153, 216, 435, 508, 785, 1079
Bme18I GGWCC 1 cut(s) 431
BmgT120I GGNCC 2 cut(s) 431, 939
BmiI GGNNCC 1 cut(s) 946
BmrFI CCNGG 6 cut(s) 153, 216, 435, 508, 785, 1079
BmsI GCATC 6 cut(s) 553, 681, 1147, 1276, 1317, 1322
BpmI CTGGAG 2 cut(s) 777, 1275
BpuEI CTTGAG 1 cut(s) 119
BpuMI CCSGG 3 cut(s) 216, 508, 785
BsaI GGTCTC 1 cut(s) 868
BsaJI CCNNGG 4 cut(s) 152, 214, 783, 834
BsaWI WCCGGW 1 cut(s) 1135
Bsc4I CCNNNNNNNGG 2 cut(s) 784, 1298
Bse118I RCCGGY 1 cut(s) 1135
Bse1I ACTGG 2 cut(s) 625, 921
Bse3DI GCAATG 2 cut(s) 342, 733
BseBI CCWGG 3 cut(s) 153, 435, 1079
BseDI CCNNGG 4 cut(s) 152, 214, 783, 834
BseGI GGATG 7 cut(s) 568, 878, 917, 1208, 1291, 1308, 1337
BseLI CCNNNNNNNGG 2 cut(s) 784, 1298
BseMI GCAATG 2 cut(s) 342, 733
BseMII CTCAG 2 cut(s) 1049, 1076
BseNI ACTGG 2 cut(s) 625, 921
BseRI GAGGAG 1 cut(s) 225
BseSI GKGCMC 3 cut(s) 363, 805, 985
BseYI CCCAGC 1 cut(s) 227
BsgI GTGCAG 1 cut(s) 111
Bsh1236I CGCG 1 cut(s) 574
Bsh1285I CGRYCG 1 cut(s) 220
BshFI GGCC 5 cut(s) 96, 140, 261, 833, 941
BshTI ACCGGT 1 cut(s) 1135
BsiEI CGRYCG 1 cut(s) 220
BsiHKAI GWGCWC 2 cut(s) 805, 985
BsiSI CCGG 5 cut(s) 216, 508, 785, 942, 1136
BslFI GGGAC 2 cut(s) 244, 1045
BslI CCNNNNNNNGG 2 cut(s) 784, 1298
BsmAI GTCTC 1 cut(s) 868
BsmFI GGGAC 2 cut(s) 244, 1045
BsnI GGCC 5 cut(s) 96, 140, 261, 833, 941
Bso31I GGTCTC 1 cut(s) 868
Bsp1286I GDGCHC 3 cut(s) 363, 805, 985
Bsp143I GATC 2 cut(s) 132, 631
Bsp19I CCATGG 1 cut(s) 834
BspACI CCGC 6 cut(s) 418, 458, 572, 893, 1017, 1263
BspANI GGCC 5 cut(s) 96, 140, 261, 833, 941
BspCNI CTCAG 2 cut(s) 1048, 1075
BspFNI CGCG 1 cut(s) 574
BspHI TCATGA 2 cut(s) 312, 649
BspLI GGNNCC 1 cut(s) 946
BspMAI CTGCAG 4 cut(s) 83, 691, 817, 994
BspMI ACCTGC 2 cut(s) 1057, 1240
BspPI GGATC 1 cut(s) 626
BspTNI GGTCTC 1 cut(s) 868
BsrDI GCAATG 2 cut(s) 342, 733
BsrFI RCCGGY 1 cut(s) 1135
BsrI ACTGG 2 cut(s) 625, 921
BssAI RCCGGY 1 cut(s) 1135
BssECI CCNNGG 4 cut(s) 152, 214, 783, 834
BssMI GATC 2 cut(s) 132, 631
BssT1I CCWWGG 1 cut(s) 834
Bst2UI CCWGG 3 cut(s) 153, 435, 1079
Bst4CI ACNGT 3 cut(s) 326, 580, 965
Bst6I CTCTTC 1 cut(s) 1093
BstAPI GCANNNNNTGC 3 cut(s) 732, 989, 998
BstC8I GCNNGC 4 cut(s) 94, 540, 733, 1306
BstDEI CTNAG 2 cut(s) 1035, 1062
BstDSI CCRYGG 1 cut(s) 834
BstF5I GGATG 7 cut(s) 568, 878, 917, 1208, 1291, 1308, 1337
BstFNI CGCG 1 cut(s) 574
BstKTI GATC 2 cut(s) 135, 634
BstMAI GTCTC 1 cut(s) 868
BstMBI GATC 2 cut(s) 132, 631
BstMCI CGRYCG 1 cut(s) 220
BstNI CCWGG 3 cut(s) 153, 435, 1079
BstNSI RCATGY 3 cut(s) 559, 735, 1339
BstSCI CCNGG 6 cut(s) 151, 214, 433, 506, 783, 1077
BstSFI CTRYAG 4 cut(s) 79, 687, 813, 990
BstSLI GKGCMC 3 cut(s) 363, 805, 985
BstUI CGCG 1 cut(s) 574
BsuI GTATCC 1 cut(s) 1075
BsuRI GGCC 5 cut(s) 96, 140, 261, 833, 941
BtgI CCRYGG 1 cut(s) 834
BtsCI GGATG 7 cut(s) 568, 878, 917, 1208, 1291, 1308, 1337
BveI ACCTGC 2 cut(s) 1057, 1240
Cac8I GCNNGC 4 cut(s) 94, 540, 733, 1306
CaiI CAGNNNCTG 2 cut(s) 998, 1166
CciI TCATGA 2 cut(s) 312, 649
Cfr10I RCCGGY 1 cut(s) 1135
Cfr13I GGNCC 2 cut(s) 431, 939
Csp6I GTAC 1 cut(s) 449
CspAI ACCGGT 1 cut(s) 1135
CspCI CAANNNNNGTGG 2 cut(s) 958, 993
CviQI GTAC 1 cut(s) 449
DdeI CTNAG 2 cut(s) 1035, 1062
DpnI GATC 2 cut(s) 134, 633
DpnII GATC 2 cut(s) 132, 631
EaeI YGGCCR 1 cut(s) 831
Eam1104I CTCTTC 1 cut(s) 1093
EarI CTCTTC 1 cut(s) 1093
Eco130I CCWWGG 1 cut(s) 834
Eco147I AGGCCT 2 cut(s) 96, 261
Eco31I GGTCTC 1 cut(s) 868
Eco32I GATATC 1 cut(s) 1204
Eco47I GGWCC 1 cut(s) 431
Eco57I CTGAAG 3 cut(s) 698, 1095, 1317
EcoRII CCWGG 3 cut(s) 151, 433, 1077
EcoRV GATATC 1 cut(s) 1204
EcoT14I CCWWGG 1 cut(s) 834
EcoT22I ATGCAT 2 cut(s) 733, 1337
ErhI CCWWGG 1 cut(s) 834
FaqI GGGAC 2 cut(s) 244, 1045
FauI CCCGC 1 cut(s) 411
FauNDI CATATG 1 cut(s) 1323
FokI GGATG 7 cut(s) 575, 865, 904, 1195, 1295, 1298, 1344
FspBI CTAG 3 cut(s) 263, 348, 1154
GsaI CCCAGC 1 cut(s) 231
GsuI CTGGAG 2 cut(s) 777, 1275
HaeIII GGCC 5 cut(s) 96, 140, 261, 833, 941
HapII CCGG 5 cut(s) 216, 508, 785, 942, 1136
HincII GTYRAC 1 cut(s) 202
HindII GTYRAC 1 cut(s) 202
HindIII AAGCTT 1 cut(s) 175
HinfI GANTC 4 cut(s) 232, 646, 1033, 1055
HpaI GTTAAC 1 cut(s) 202
HpaII CCGG 5 cut(s) 216, 508, 785, 942, 1136
HphI GGTGA 1 cut(s) 1268
Hpy166II GTNNAC 5 cut(s) 202, 803, 983, 1171, 1319
Hpy188I TCNGA 3 cut(s) 631, 1038, 1114
Hpy188III TCNNGA 6 cut(s) 313, 338, 471, 605, 650, 1154
Hpy8I GTNNAC 5 cut(s) 202, 803, 983, 1171, 1319
Hpy99I CGWCG 2 cut(s) 62, 275
HpyAV CCTTC 3 cut(s) 56, 1292, 1342
HpyCH4III ACNGT 3 cut(s) 326, 580, 965
HpyCH4IV ACGT 3 cut(s) 57, 198, 270
HpyF3I CTNAG 2 cut(s) 1035, 1062
HpySE526I ACGT 3 cut(s) 57, 198, 270
KspAI GTTAAC 1 cut(s) 202
Kzo9I GATC 2 cut(s) 132, 631
LmnI GCTCC 9 cut(s) 296, 460, 535, 796, 944, 1108, 1168, 1294, 1301
LweI GCATC 6 cut(s) 553, 681, 1147, 1276, 1317, 1322
MaeI CTAG 3 cut(s) 263, 348, 1154
MaeII ACGT 3 cut(s) 57, 198, 270
MaeIII GTNAC 3 cut(s) 618, 770, 965
MalI GATC 2 cut(s) 134, 633
MboI GATC 2 cut(s) 132, 631
MboII GAAGA 4 cut(s) 620, 830, 1080, 1261
MfeI CAATTG 2 cut(s) 381, 1182
MhlI GDGCHC 3 cut(s) 363, 805, 985
MlsI TGGCCA 1 cut(s) 833
MluCI AATT 4 cut(s) 277, 381, 1182, 1239
MluNI TGGCCA 1 cut(s) 833
MlyI GAGTC 3 cut(s) 226, 1027, 1064
MmeI TCCRAC 2 cut(s) 513, 1030
MnlI CCTC 9 cut(s) 86, 109, 246, 251, 345, 381, 859, 958, 1096
Mox20I TGGCCA 1 cut(s) 833
Mph1103I ATGCAT 2 cut(s) 733, 1337
MscI TGGCCA 1 cut(s) 833
MseI TTAA 4 cut(s) 69, 201, 276, 308
MslI CAYNNNNRTG 1 cut(s) 366
Msp20I TGGCCA 1 cut(s) 833
MspA1I CMGCKG 4 cut(s) 686, 812, 995, 1295
MspI CCGG 5 cut(s) 216, 508, 785, 942, 1136
MspR9I CCNGG 6 cut(s) 153, 216, 435, 508, 785, 1079
MunI CAATTG 2 cut(s) 381, 1182
MvaI CCWGG 3 cut(s) 153, 435, 1079
MvnI CGCG 1 cut(s) 574
NciI CCSGG 3 cut(s) 216, 508, 785
NcoI CCATGG 1 cut(s) 834
NdeI CATATG 1 cut(s) 1323
NdeII GATC 2 cut(s) 132, 631
NlaIV GGNNCC 1 cut(s) 946
NsiI ATGCAT 2 cut(s) 733, 1337
NspI RCATGY 3 cut(s) 559, 735, 1339
PaeI GCATGC 1 cut(s) 735
PagI TCATGA 2 cut(s) 312, 649
PaqCI CACCTGC 2 cut(s) 1057, 1240
PceI AGGCCT 2 cut(s) 96, 261
PcsI WCGNNNNNNNCGW 1 cut(s) 217
PfeI GAWTC 1 cut(s) 646
PfoI TCCNGGA 3 cut(s) 433, 506, 1077
PinAI ACCGGT 1 cut(s) 1135
PleI GAGTC 3 cut(s) 226, 1027, 1063
PpsI GAGTC 3 cut(s) 226, 1027, 1063
PsiI TTATAA 1 cut(s) 1409
Psp1406I AACGTT 1 cut(s) 198
Psp6I CCWGG 3 cut(s) 151, 433, 1077
PspFI CCCAGC 1 cut(s) 227
PspGI CCWGG 3 cut(s) 151, 433, 1077
PspN4I GGNNCC 1 cut(s) 946
PspPI GGNCC 2 cut(s) 431, 939
PsrI GAACNNNNNNTAC 2 cut(s) 603, 635
PstI CTGCAG 4 cut(s) 83, 691, 817, 994
PstNI CAGNNNCTG 2 cut(s) 998, 1166
PvuII CAGCTG 4 cut(s) 686, 812, 995, 1295
RsaI GTAC 1 cut(s) 450
RsaNI GTAC 1 cut(s) 449
RseI CAYNNNNRTG 1 cut(s) 366
SaqAI TTAA 4 cut(s) 69, 201, 276, 308
Sau3AI GATC 2 cut(s) 132, 631
Sau96I GGNCC 2 cut(s) 431, 939
ScaI AGTACT 1 cut(s) 450
SchI GAGTC 3 cut(s) 226, 1027, 1064
ScrFI CCNGG 6 cut(s) 153, 216, 435, 508, 785, 1079
SduI GDGCHC 3 cut(s) 363, 805, 985
SfaNI GCATC 6 cut(s) 553, 681, 1147, 1276, 1317, 1322
SfcI CTRYAG 4 cut(s) 79, 687, 813, 990
SinI GGWCC 1 cut(s) 431
SmiMI CAYNNNNRTG 1 cut(s) 366
SmlI CTYRAG 1 cut(s) 98
SmoI CTYRAG 1 cut(s) 98
SphI GCATGC 1 cut(s) 735
Sse9I AATT 4 cut(s) 277, 381, 1182, 1239
SseBI AGGCCT 2 cut(s) 96, 261
SsiI CCGC 6 cut(s) 418, 458, 572, 893, 1017, 1263
SspMI CTAG 3 cut(s) 263, 348, 1154
StuI AGGCCT 2 cut(s) 96, 261
StyD4I CCNGG 6 cut(s) 151, 214, 433, 506, 783, 1077
StyI CCWWGG 1 cut(s) 834
TaaI ACNGT 3 cut(s) 326, 580, 965
TaiI ACGT 3 cut(s) 60, 201, 273
TaqI TCGA 3 cut(s) 17, 60, 1387
TasI AATT 4 cut(s) 277, 381, 1182, 1239
TatI WGTACW 1 cut(s) 448
TauI GCSGC 1 cut(s) 1020
TfiI GAWTC 1 cut(s) 646
Tru1I TTAA 4 cut(s) 69, 201, 276, 308
Tru9I TTAA 4 cut(s) 69, 201, 276, 308
TspDTI ATGAA 7 cut(s) 329, 380, 638, 906, 921, 1059, 1257
TspGWI ACGGA 2 cut(s) 365, 1081
VneI GTGCAC 2 cut(s) 801, 981
VpaK11BI GGWCC 1 cut(s) 431
XbaI TCTAGA 1 cut(s) 1153
XceI RCATGY 3 cut(s) 559, 735, 1339
XspI CTAG 3 cut(s) 263, 348, 1154
ZrmI AGTACT 1 cut(s) 450
Zsp2I ATGCAT 2 cut(s) 733, 1337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.