Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002680

Physical Location & Seq

Genomic Coordinates Forward (+)

6526936 .. 6530831

Gene Structure 3896 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00338390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGATGACGACAATGAGGAACATGACAACTTGGCAGAGATAATGAGTATGGAGGAGATGGTATCACTAGAGTTGAGGAAGAAGATCGTGACCTTAATATTTTACGTGAAGAGGCACATGACCGGAATGCAAGCCAATGCCACGGGTAGGGTAGAACTCGTGCATCCTGCAATTAACCAGCCAACTGCACCACCAGTTGAGGAAGATTTAGAGCTGGTCAAGGCTATTGATGCTTCCATTCAGTCTTCTTTGCAGGAGAGGCCGGCCTTGTCTGATGCACTCCGGATCAATGAAACAAATGCATCAAGTAGTTTGAGTACCTCCACGGATAGTGGAGACTTCTTACAGCATGAAAGTGTCCCAGGAAGGGATTCAGCTTCACACACAGAGATCCATGTTATCTCTACCATTCAAACATCTACTACCTCAGATTCTATCCCATCATCTCCAACCCCTTCAGCTCCACCAGTTTCAGATGATTGTCTAGATCCTTTTCAGTGTCAAACATCTACTACCTCAGATTCAATCCCATCATCGATCTCCAACCCCATCAGCTCCACCAGTTTCAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Methyltransf_29 zf-C3HC4_3

Protein Analysis

190

Amino Acids

20.54

Weight (kDa)

4.4

Isoelectric Point (pI)

58.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002680)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23280 AT3G23280 AT4G14365
fragaria_vesca	FvH4_4g03720 FvH4_4g03720 FvH4_4g03730
malus_domestica	MD05G1075400.v1.1 MD13G1214800.v1.1 MD16G1219900.v1.1
prunus_persica	Prupe.1G040200_v2.0.a1 Prupe.1G040200_v2.0.a1
pyrus_communis	pycom13g18820 pycom16g18320
rosa_chinensis	RchiOBHm_Chr4g0393331 RchiOBHm_Chr4g0393371
rosa_laevigata	RLG00000009750 RLG00000009758 RLG00000009759 RLG00000009763
rosa_multiflora	Rmu_sc0008931.1_g000009
rosa_roxburghii	Rroxscaffold_3G00224380 Rroxscaffold_5G00338320 Rroxscaffold_5G00338340 Rroxscaffold_5G00338360 Rroxscaffold_5G00338390
rosa_rugosa	Rorug04G0001300 Rorug04G0001500 Rorug04G0001800
rosa_samantha	Rh4AG046800 Rh4AG047000 Rh4AG047300 Rh4AG047400 Rh4BG042400 Rh4BG042600 Rh4CG049900 Rh4CG050000 Rh4DG044200 Rh5AG327600
rosa_wichuraiana	Rw4G003700 Rw4G003720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	282
AclWI	GGATC	3 cut(s)	293, 385, 482
AcuI	CTGAAG	1 cut(s)	441
AfaI	GTAC	1 cut(s)	319
AfiI	CCNNNNNNNGG	2 cut(s)	147, 367
AgsI	TTSAA	2 cut(s)	413, 525
AjnI	CCWGG	1 cut(s)	361
AluBI	AGCT	4 cut(s)	214, 377, 461, 555
AluI	AGCT	4 cut(s)	214, 377, 461, 555
Alw26I	GTCTC	1 cut(s)	330
AlwI	GGATC	3 cut(s)	293, 385, 482
Aor13HI	TCCGGA	1 cut(s)	282
AoxI	GGCC	2 cut(s)	260, 264
Asp700I	GAANNNNTTC	1 cut(s)	370
BauI	CACGAG	1 cut(s)	158
BbsI	GAAGAC	1 cut(s)	237
BccI	CCATC	4 cut(s)	52, 448, 538, 557
BciT130I	CCWGG	1 cut(s)	363
BcoDI	GTCTC	1 cut(s)	330
BfaI	CTAG	2 cut(s)	68, 485
Bme1390I	CCNGG	1 cut(s)	363
BmrFI	CCNGG	1 cut(s)	363
BmsI	GCATC	4 cut(s)	172, 220, 265, 311
BpiI	GAAGAC	1 cut(s)	237
Bsa29I	ATCGAT	1 cut(s)	536
BsaAI	YACGTR	1 cut(s)	106
BsaJI	CCNNGG	3 cut(s)	141, 324, 361
BsaWI	WCCGGW	2 cut(s)	122, 282
Bsc4I	CCNNNNNNNGG	2 cut(s)	147, 367
Bse118I	RCCGGY	1 cut(s)	262
Bse1I	ACTGG	3 cut(s)	194, 467, 561
BseAI	TCCGGA	1 cut(s)	282
BseBI	CCWGG	1 cut(s)	363
BseCI	ATCGAT	1 cut(s)	536
BseDI	CCNNGG	3 cut(s)	141, 324, 361
BseGI	GGATG	2 cut(s)	10, 163
BseLI	CCNNNNNNNGG	2 cut(s)	147, 367
BseMII	CTCAG	2 cut(s)	441, 531
BseNI	ACTGG	3 cut(s)	194, 467, 561
BseRI	GAGGAG	1 cut(s)	68
BsgI	GTGCAG	1 cut(s)	171
BshFI	GGCC	2 cut(s)	262, 266
BshVI	ATCGAT	1 cut(s)	536
BsiSI	CCGG	3 cut(s)	123, 263, 283
BslFI	GGGAC	1 cut(s)	344
BslI	CCNNNNNNNGG	2 cut(s)	147, 367
BsmAI	GTCTC	1 cut(s)	330
BsmFI	GGGAC	1 cut(s)	344
BsmI	GAATGC	1 cut(s)	132
BsnI	GGCC	2 cut(s)	262, 266
Bsp13I	TCCGGA	1 cut(s)	282
Bsp143I	GATC	5 cut(s)	84, 285, 390, 487, 537
BspANI	GGCC	2 cut(s)	262, 266
BspCNI	CTCAG	2 cut(s)	440, 530
BspDI	ATCGAT	1 cut(s)	536
BspEI	TCCGGA	1 cut(s)	282
BspPI	GGATC	3 cut(s)	293, 385, 482
BsrFI	RCCGGY	1 cut(s)	262
BsrI	ACTGG	3 cut(s)	194, 467, 561
BssAI	RCCGGY	1 cut(s)	262
BssECI	CCNNGG	3 cut(s)	141, 324, 361
BssMI	GATC	5 cut(s)	84, 285, 390, 487, 537
BssSI	CACGAG	1 cut(s)	158
Bst2BI	CACGAG	1 cut(s)	158
Bst2UI	CCWGG	1 cut(s)	363
Bst6I	CTCTTC	1 cut(s)	104
BstBAI	YACGTR	1 cut(s)	106
BstC8I	GCNNGC	2 cut(s)	132, 264
BstDEI	CTNAG	2 cut(s)	427, 517
BstDSI	CCRYGG	2 cut(s)	141, 324
BstF5I	GGATG	2 cut(s)	10, 163
BstKTI	GATC	5 cut(s)	87, 288, 393, 490, 540
BstMAI	GTCTC	1 cut(s)	330
BstMBI	GATC	5 cut(s)	84, 285, 390, 487, 537
BstMWI	GCNNNNNNNGC	2 cut(s)	230, 259
BstNI	CCWGG	1 cut(s)	363
BstSCI	CCNGG	1 cut(s)	361
BstV2I	GAAGAC	1 cut(s)	237
BstX2I	RGATCY	2 cut(s)	390, 487
BstYI	RGATCY	2 cut(s)	390, 487
Bsu15I	ATCGAT	1 cut(s)	536
BsuRI	GGCC	2 cut(s)	262, 266
BsuTUI	ATCGAT	1 cut(s)	536
BtgI	CCRYGG	2 cut(s)	141, 324
BtsCI	GGATG	2 cut(s)	10, 163
BtsIMutI	CAGTG	1 cut(s)	503
Cac8I	GCNNGC	2 cut(s)	132, 264
Cfr10I	RCCGGY	1 cut(s)	262
ClaI	ATCGAT	1 cut(s)	536
Csp6I	GTAC	1 cut(s)	318
CviAII	CATG	4 cut(s)	23, 118, 350, 395
CviJI	RGCY	9 cut(s)	134, 181, 214, 224, 262, 266, 377, 461, 555
CviKI_1	RGCY	9 cut(s)	134, 181, 214, 224, 262, 266, 377, 461, 555
CviQI	GTAC	1 cut(s)	318
DdeI	CTNAG	2 cut(s)	427, 517
DpnI	GATC	5 cut(s)	86, 287, 392, 489, 539
DpnII	GATC	5 cut(s)	84, 285, 390, 487, 537
Eam1104I	CTCTTC	1 cut(s)	104
EarI	CTCTTC	1 cut(s)	104
Eco57I	CTGAAG	1 cut(s)	441
EcoRII	CCWGG	1 cut(s)	361
EcoT22I	ATGCAT	1 cut(s)	304
FaeI	CATG	4 cut(s)	26, 121, 353, 398
FaiI	YATR	5 cut(s)	24, 50, 119, 351, 396
FaqI	GGGAC	1 cut(s)	344
FatI	CATG	4 cut(s)	22, 117, 349, 394
FokI	GGATG	2 cut(s)	17, 150
FseI	GGCCGGCC	1 cut(s)	266
FspBI	CTAG	2 cut(s)	68, 485
HaeIII	GGCC	2 cut(s)	262, 266
HapII	CCGG	3 cut(s)	123, 263, 283
Hin1II	CATG	4 cut(s)	26, 121, 353, 398
HinfI	GANTC	3 cut(s)	371, 431, 521
HpaII	CCGG	3 cut(s)	123, 263, 283
Hpy188I	TCNGA	5 cut(s)	274, 430, 475, 520, 569
Hpy188III	TCNNGA	3 cut(s)	88, 283, 485
HpyAV	CCTTC	2 cut(s)	360, 465
HpyCH4IV	ACGT	1 cut(s)	105
HpyCH4V	TGCA	7 cut(s)	130, 163, 170, 188, 253, 278, 302
HpyF10VI	GCNNNNNNNGC	2 cut(s)	230, 259
HpyF3I	CTNAG	2 cut(s)	427, 517
HpySE526I	ACGT	1 cut(s)	105
Hsp92II	CATG	4 cut(s)	26, 121, 353, 398
Kpn2I	TCCGGA	1 cut(s)	282
KroI	GCCGGC	1 cut(s)	262
KroNI	GCCGGC	1 cut(s)	264
Kzo9I	GATC	5 cut(s)	84, 285, 390, 487, 537
LmnI	GCTCC	2 cut(s)	466, 560
LweI	GCATC	4 cut(s)	172, 220, 265, 311
MaeI	CTAG	2 cut(s)	68, 485
MaeII	ACGT	1 cut(s)	105
MaeIII	GTNAC	1 cut(s)	88
MalI	GATC	5 cut(s)	86, 287, 392, 489, 539
MboI	GATC	5 cut(s)	84, 285, 390, 487, 537
MboII	GAAGA	5 cut(s)	91, 94, 121, 215, 237
MflI	RGATCY	2 cut(s)	390, 487
MluCI	AATT	1 cut(s)	171
MmeI	TCCRAC	2 cut(s)	473, 567
MnlI	CCTC	9 cut(s)	10, 46, 69, 105, 193, 252, 331, 436, 526
Mph1103I	ATGCAT	1 cut(s)	304
MroI	TCCGGA	1 cut(s)	282
MroNI	GCCGGC	1 cut(s)	262
MroXI	GAANNNNTTC	1 cut(s)	370
MseI	TTAA	2 cut(s)	95, 174
MslI	CAYNNNNRTG	1 cut(s)	354
MspI	CCGG	3 cut(s)	123, 263, 283
MspR9I	CCNGG	1 cut(s)	363
Mva1269I	GAATGC	1 cut(s)	132
MvaI	CCWGG	1 cut(s)	363
MwoI	GCNNNNNNNGC	2 cut(s)	230, 259
NaeI	GCCGGC	1 cut(s)	264
NdeII	GATC	5 cut(s)	84, 285, 390, 487, 537
NgoMIV	GCCGGC	1 cut(s)	262
NlaIII	CATG	4 cut(s)	26, 121, 353, 398
NmuCI	GTSAC	1 cut(s)	88
NsiI	ATGCAT	1 cut(s)	304
PctI	GAATGC	1 cut(s)	132
PdiI	GCCGGC	1 cut(s)	264
PdmI	GAANNNNTTC	1 cut(s)	370
PfeI	GAWTC	3 cut(s)	371, 431, 521
Ppu21I	YACGTR	1 cut(s)	106
Psp6I	CCWGG	1 cut(s)	361
PspGI	CCWGG	1 cut(s)	361
PsuI	RGATCY	2 cut(s)	390, 487
RigI	GGCCGGCC	1 cut(s)	266
RsaI	GTAC	1 cut(s)	319
RsaNI	GTAC	1 cut(s)	318
RseI	CAYNNNNRTG	1 cut(s)	354
SaqAI	TTAA	2 cut(s)	95, 174
Sau3AI	GATC	5 cut(s)	84, 285, 390, 487, 537
ScrFI	CCNGG	1 cut(s)	363
SetI	ASST	9 cut(s)	95, 108, 216, 323, 379, 428, 463, 518, 557
SfaNI	GCATC	4 cut(s)	172, 220, 265, 311
SmiMI	CAYNNNNRTG	1 cut(s)	354
Sse9I	AATT	1 cut(s)	171
SspI	AATATT	1 cut(s)	99
SspMI	CTAG	2 cut(s)	68, 485
StyD4I	CCNGG	1 cut(s)	361
TaiI	ACGT	1 cut(s)	108
TaqI	TCGA	1 cut(s)	536
TasI	AATT	1 cut(s)	171
TfiI	GAWTC	3 cut(s)	371, 431, 521
Tru1I	TTAA	2 cut(s)	95, 174
Tru9I	TTAA	2 cut(s)	95, 174
TscAI	CASTG	1 cut(s)	503
TseFI	GTSAC	1 cut(s)	88
Tsp45I	GTSAC	1 cut(s)	88
TspDTI	ATGAA	2 cut(s)	306, 366
TspGWI	ACGGA	1 cut(s)	341
TspRI	CASTG	1 cut(s)	503
XbaI	TCTAGA	1 cut(s)	484
XmnI	GAANNNNTTC	1 cut(s)	370
XspI	CTAG	2 cut(s)	68, 485
Zsp2I	ATGCAT	1 cut(s)	304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.