Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002680

Physical Location & Seq

Genomic Coordinates Forward (+)

327626 .. 333343

Gene Structure 5718 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0001500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGCCTGTAAAGACAGAACCGTGCAGATACTTTCAGCGTGGCAGCTGTCAGTATGGAGATAAGTGTAGATATCTTCATGTGACTCAGCAACAGCCAAAGTCGAATATCTTTGGTGGATTTGGGTCCCAATCTGGCTCAGATCAGCACCAAAAGTCCAATCCTTATGGTTTTGGTGTTCATAACAACTCTCAGTCAAAAGCGGGAACTGATAAGCCTTTCGAAAACAAATGGACTCGTTCCTCCCCCGCAACTGCTACTGCTACTCCTTCATCACGGAGATCTGATAACCAGCCCCAGACAACAAATCATGAGTGCACAAATCCCGAGTCCTGCAGAAGTATAATTAATGAAGATTTTGAGCGTGAGAGACCACTTTGGAAACTTACCTGCTATGGTCACTCAAGAAATTCTCCTTGTGATATTGTTGGTGATGTTAGTTACGAAGAATTGAGGGCACTGGCATATGATGATGCTAAGCGAGGGCTGAACTTGCCGTCAATAATTGAAAGAGAACGAAATCTGGTTAATACCAAGTCTATTGAGTTTGAAAATCTTCGCAAGCCCCGTGCTGTTCCACTGAACTCTACTGTTAGCCAAAGCCCTTTCGCTTCAGCTACTGCAAATGCATTCTTGCAGACTCCTCAAAGTAGTGCTCCTCCTTCAGTATCAAGTTTCAGCCAGTTTGGTACATCACTCAACGTGGGATTTGGACAAAGGCCATCTGCGCCAGCAAATAATGGTATTTTTCAGCCGAGCCTGTTCATGAATTCTAGCCATGCTTCAAGTGGATTTGGGACAAACAATATTCCATCTGCAAACGTTGGTTCACTTGCCAGCCAATCTCATAACAGTATACGCGGAAGTATTTTTACCCACAATGTAGGATTTGGCAACACTGATGTCATGAGACCTGACAGCAACCAAATATCTAGTTCAGCAGTGCCATCACAATTTCCTAGTGCTACAATTAGCCAGCCACTTATTGTTTCAGACGGACCTAGCTCTGCTTCCATTTCAAGTGGACAAGTAACTGCAGAAGCCCAGTCACTAAATAACATACAAAGAGAGAAGATTTCTGGGGACATGAGTATTTGGTTGAAAAAGAAATGGACACCTGGAGAGGTTCCAGAAGAAGAACCGCCAGATGCATTGGTTCAGATTGACTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Methyltransf_29 zf-C3HC4_3

Protein Analysis

389

Amino Acids

42.28

Weight (kDa)

7.63

Isoelectric Point (pI)

64.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH	PF00642	4 - 27	1.6e-09	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH_4	PF18044	7 - 26	1.6e-08	CCCH-type zinc finger
zf_CCCH_4	PF18345	8 - 26	1.5e-07	Zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002680)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23280 AT3G23280 AT4G14365
fragaria_vesca	FvH4_4g03720 FvH4_4g03720 FvH4_4g03730
malus_domestica	MD05G1075400.v1.1 MD13G1214800.v1.1 MD16G1219900.v1.1
prunus_persica	Prupe.1G040200_v2.0.a1 Prupe.1G040200_v2.0.a1
pyrus_communis	pycom13g18820 pycom16g18320
rosa_chinensis	RchiOBHm_Chr4g0393331 RchiOBHm_Chr4g0393371
rosa_laevigata	RLG00000009750 RLG00000009758 RLG00000009759 RLG00000009763
rosa_multiflora	Rmu_sc0008931.1_g000009
rosa_roxburghii	Rroxscaffold_3G00224380 Rroxscaffold_5G00338320 Rroxscaffold_5G00338340 Rroxscaffold_5G00338360 Rroxscaffold_5G00338390
rosa_rugosa	Rorug04G0001300 Rorug04G0001500 Rorug04G0001800
rosa_samantha	Rh4AG046800 Rh4AG047000 Rh4AG047300 Rh4AG047400 Rh4BG042400 Rh4BG042600 Rh4CG049900 Rh4CG050000 Rh4DG044200 Rh5AG327600
rosa_wichuraiana	Rw4G003700 Rw4G003720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	395
AccI	GTMKAC	1 cut(s)	853
AccII	CGCG	1 cut(s)	858
AciI	CCGC	4 cut(s)	200, 246, 858, 1139
AclI	AACGTT	1 cut(s)	819
AcsI	RAATTY	2 cut(s)	406, 766
AcuI	CTGAAG	2 cut(s)	594, 645
AfaI	GTAC	1 cut(s)	688
AgsI	TTSAA	5 cut(s)	506, 548, 783, 1017, 1099
AjnI	CCWGG	1 cut(s)	1114
AluBI	AGCT	3 cut(s)	45, 614, 1002
AluI	AGCT	3 cut(s)	45, 614, 1002
Alw21I	GWGCWC	2 cut(s)	317, 655
Alw26I	GTCTC	2 cut(s)	361, 901
Alw44I	GTGCAC	1 cut(s)	313
AlwNI	CAGNNNCTG	1 cut(s)	617
Ama87I	CYCGRG	1 cut(s)	323
AoxI	GGCC	1 cut(s)	716
ApaLI	GTGCAC	1 cut(s)	313
ApeKI	GCWGC	1 cut(s)	42
ApoI	RAATTY	2 cut(s)	406, 766
ArsI	GACNNNNNNTTYG	2 cut(s)	311, 343
AseI	ATTAAT	1 cut(s)	345
Asp700I	GAANNNNTTC	1 cut(s)	552
AspLEI	GCGC	1 cut(s)	727
AspS9I	GGNCC	2 cut(s)	123, 995
AsuHPI	GGTGA	1 cut(s)	440
AsuII	TTCGAA	1 cut(s)	219
AvaI	CYCGRG	1 cut(s)	323
AvaII	GGWCC	2 cut(s)	123, 995
BaeGI	GKGCMC	2 cut(s)	317, 457
BarI	GAAGNNNNNNTAC	2 cut(s)	853, 885
Bbv12I	GWGCWC	2 cut(s)	317, 655
BbvI	GCAGC	1 cut(s)	54
BccI	CCATC	3 cut(s)	727, 817, 952
BceAI	ACGGC	1 cut(s)	478
BciT130I	CCWGG	1 cut(s)	1116
BcoDI	GTCTC	2 cut(s)	361, 901
BfaI	CTAG	4 cut(s)	771, 930, 957, 999
BfmI	CTRYAG	2 cut(s)	331, 1032
BfuAI	ACCTGC	1 cut(s)	395
BglII	AGATCT	1 cut(s)	278
BisI	GCNGC	1 cut(s)	43
BlpI	GCTNAGC	1 cut(s)	474
BlsI	GCNGC	1 cut(s)	44
Bme1390I	CCNGG	1 cut(s)	1116
Bme18I	GGWCC	2 cut(s)	123, 995
BmeT110I	CYCGRG	1 cut(s)	323
BmgT120I	GGNCC	2 cut(s)	123, 995
BmiI	GGNNCC	3 cut(s)	124, 125, 1125
BmrFI	CCNGG	1 cut(s)	1116
BmrI	ACTGGG	1 cut(s)	1036
BmsI	GCATC	2 cut(s)	460, 1135
BmuI	ACTGGG	1 cut(s)	1036
BpmI	CTGGAG	1 cut(s)	1137
Bpu1102I	GCTNAGC	1 cut(s)	474
Bpu14I	TTCGAA	1 cut(s)	219
BpuEI	CTTGAG	1 cut(s)	385
BsaI	GGTCTC	2 cut(s)	361, 901
BsaXI	ACNNNNNCTCC	2 cut(s)	247, 277
Bse1I	ACTGG	3 cut(s)	462, 679, 1042
BseBI	CCWGG	1 cut(s)	1116
BseMII	CTCAG	3 cut(s)	98, 150, 203
BseNI	ACTGG	3 cut(s)	462, 679, 1042
BseRI	GAGGAG	2 cut(s)	630, 645
BseSI	GKGCMC	2 cut(s)	317, 457
BseXI	GCAGC	1 cut(s)	54
BsgI	GTGCAG	1 cut(s)	43
Bsh1236I	CGCG	1 cut(s)	858
BshFI	GGCC	1 cut(s)	718
BsiHKAI	GWGCWC	2 cut(s)	317, 655
BsiHKCI	CYCGRG	1 cut(s)	323
BslFI	GGGAC	3 cut(s)	109, 808, 1094
BsmAI	GTCTC	2 cut(s)	361, 901
BsmFI	GGGAC	3 cut(s)	109, 808, 1094
BsmI	GAATGC	1 cut(s)	626
BsnI	GGCC	1 cut(s)	718
Bso31I	GGTCTC	2 cut(s)	361, 901
BsoBI	CYCGRG	1 cut(s)	323
Bsp119I	TTCGAA	1 cut(s)	219
Bsp1286I	GDGCHC	3 cut(s)	317, 457, 655
Bsp143I	GATC	2 cut(s)	139, 278
Bsp1720I	GCTNAGC	1 cut(s)	474
BspACI	CCGC	4 cut(s)	200, 246, 858, 1139
BspANI	GGCC	1 cut(s)	718
BspCNI	CTCAG	3 cut(s)	97, 149, 202
BspFNI	CGCG	1 cut(s)	858
BspHI	TCATGA	3 cut(s)	307, 762, 903
BspLI	GGNNCC	3 cut(s)	124, 125, 1125
BspMAI	CTGCAG	2 cut(s)	335, 1036
BspMI	ACCTGC	1 cut(s)	395
BspT104I	TTCGAA	1 cut(s)	219
BspTNI	GGTCTC	2 cut(s)	361, 901
BsrI	ACTGG	3 cut(s)	462, 679, 1042
BssMI	GATC	2 cut(s)	139, 278
BssNAI	GTATAC	1 cut(s)	854
Bst1107I	GTATAC	1 cut(s)	854
Bst2UI	CCWGG	1 cut(s)	1116
Bst4CI	ACNGT	3 cut(s)	21, 589, 851
BstBI	TTCGAA	1 cut(s)	219
BstC8I	GCNNGC	4 cut(s)	560, 729, 835, 974
BstDEI	CTNAG	4 cut(s)	84, 136, 189, 474
BstFNI	CGCG	1 cut(s)	858
BstHHI	GCGC	1 cut(s)	727
BstKTI	GATC	2 cut(s)	142, 281
BstMAI	GTCTC	2 cut(s)	361, 901
BstMBI	GATC	2 cut(s)	139, 278
BstMWI	GCNNNNNNNGC	2 cut(s)	490, 724
BstNI	CCWGG	1 cut(s)	1116
BstSCI	CCNGG	1 cut(s)	1114
BstSFI	CTRYAG	2 cut(s)	331, 1032
BstSLI	GKGCMC	2 cut(s)	317, 457
BstUI	CGCG	1 cut(s)	858
BstV1I	GCAGC	1 cut(s)	54
BstX2I	RGATCY	1 cut(s)	278
BstYI	RGATCY	1 cut(s)	278
BstZ17I	GTATAC	1 cut(s)	854
BsuRI	GGCC	1 cut(s)	718
BtsI	GCAGTG	1 cut(s)	945
BtsIMutI	CAGTG	4 cut(s)	455, 575, 894, 945
BveI	ACCTGC	1 cut(s)	395
Cac8I	GCNNGC	4 cut(s)	560, 729, 835, 974
CaiI	CAGNNNCTG	1 cut(s)	617
CciI	TCATGA	3 cut(s)	307, 762, 903
CfoI	GCGC	1 cut(s)	727
Cfr13I	GGNCC	2 cut(s)	123, 995
Csp6I	GTAC	1 cut(s)	687
CviAII	CATG	6 cut(s)	77, 308, 763, 776, 904, 1084
CviQI	GTAC	1 cut(s)	687
DdeI	CTNAG	4 cut(s)	84, 136, 189, 474
DpnI	GATC	2 cut(s)	141, 280
DpnII	GATC	2 cut(s)	139, 278
Eco31I	GGTCTC	2 cut(s)	361, 901
Eco32I	GATATC	1 cut(s)	71
Eco47I	GGWCC	2 cut(s)	123, 995
Eco57I	CTGAAG	2 cut(s)	594, 645
Eco88I	CYCGRG	1 cut(s)	323
EcoO109I	RGGNCCY	1 cut(s)	123
EcoRI	GAATTC	1 cut(s)	766
EcoRII	CCWGG	1 cut(s)	1114
EcoRV	GATATC	1 cut(s)	71
EcoT22I	ATGCAT	2 cut(s)	628, 1150
FaeI	CATG	6 cut(s)	80, 311, 766, 779, 907, 1087
FaqI	GGGAC	3 cut(s)	109, 808, 1094
FatI	CATG	6 cut(s)	76, 307, 762, 775, 903, 1083
FauI	CCCGC	2 cut(s)	193, 253
FauNDI	CATATG	1 cut(s)	463
FblI	GTMKAC	1 cut(s)	853
Fnu4HI	GCNGC	1 cut(s)	43
Fsp4HI	GCNGC	1 cut(s)	43
FspBI	CTAG	4 cut(s)	771, 930, 957, 999
GlaI	GCGC	1 cut(s)	726
GluI	GCNGC	1 cut(s)	43
GsuI	CTGGAG	1 cut(s)	1137
HaeIII	GGCC	1 cut(s)	718
HhaI	GCGC	1 cut(s)	727
Hin1II	CATG	6 cut(s)	80, 311, 766, 779, 907, 1087
Hin6I	GCGC	1 cut(s)	725
HinP1I	GCGC	1 cut(s)	725
HinfI	GANTC	4 cut(s)	82, 232, 326, 637
HphI	GGTGA	1 cut(s)	440
Hpy166II	GTNNAC	4 cut(s)	315, 827, 854, 1022
Hpy188I	TCNGA	4 cut(s)	139, 283, 991, 1158
Hpy188III	TCNNGA	6 cut(s)	308, 323, 402, 763, 904, 1127
Hpy8I	GTNNAC	4 cut(s)	315, 827, 854, 1022
HpyAV	CCTTC	2 cut(s)	276, 669
HpyCH4III	ACNGT	3 cut(s)	21, 589, 851
HpyCH4IV	ACGT	2 cut(s)	699, 819
HpyCH4V	TGCA	9 cut(s)	24, 315, 333, 620, 626, 634, 815, 1034, 1148
HpyF10VI	GCNNNNNNNGC	2 cut(s)	490, 724
HpyF3I	CTNAG	4 cut(s)	84, 136, 189, 474
HpySE526I	ACGT	2 cut(s)	699, 819
Hsp92II	CATG	6 cut(s)	80, 311, 766, 779, 907, 1087
HspAI	GCGC	1 cut(s)	725
KflI	GGGWCCC	1 cut(s)	123
Kzo9I	GATC	2 cut(s)	139, 278
LmnI	GCTCC	1 cut(s)	658
Lsp1109I	GCAGC	1 cut(s)	54
LweI	GCATC	2 cut(s)	460, 1135
MaeI	CTAG	4 cut(s)	771, 930, 957, 999
MaeII	ACGT	2 cut(s)	699, 819
MaeIII	GTNAC	5 cut(s)	79, 395, 437, 1027, 1044
MalI	GATC	2 cut(s)	141, 280
MboI	GATC	2 cut(s)	139, 278
MboII	GAAGA	7 cut(s)	65, 362, 455, 545, 1081, 1142, 1145
MflI	RGATCY	1 cut(s)	278
MhlI	GDGCHC	3 cut(s)	317, 457, 655
MluCI	AATT	7 cut(s)	342, 406, 446, 501, 766, 950, 966
MlyI	GAGTC	4 cut(s)	76, 226, 335, 631
MnlI	CCTC	6 cut(s)	250, 444, 473, 651, 666, 1114
Mph1103I	ATGCAT	2 cut(s)	628, 1150
MroXI	GAANNNNTTC	1 cut(s)	552
MseI	TTAA	2 cut(s)	345, 525
MspA1I	CMGCKG	1 cut(s)	45
MspR9I	CCNGG	1 cut(s)	1116
Mva1269I	GAATGC	1 cut(s)	626
MvaI	CCWGG	1 cut(s)	1116
MvnI	CGCG	1 cut(s)	858
MwoI	GCNNNNNNNGC	2 cut(s)	490, 724
NdeI	CATATG	1 cut(s)	463
NdeII	GATC	2 cut(s)	139, 278
NlaIII	CATG	6 cut(s)	80, 311, 766, 779, 907, 1087
NlaIV	GGNNCC	3 cut(s)	124, 125, 1125
NmeAIII	GCCGAG	1 cut(s)	777
NmuCI	GTSAC	3 cut(s)	79, 395, 1044
NsiI	ATGCAT	2 cut(s)	628, 1150
NspV	TTCGAA	1 cut(s)	219
PagI	TCATGA	3 cut(s)	307, 762, 903
PcsI	WCGNNNNNNNCGW	1 cut(s)	562
PctI	GAATGC	1 cut(s)	626
PdmI	GAANNNNTTC	1 cut(s)	552
PkrI	GCNGC	1 cut(s)	44
PleI	GAGTC	4 cut(s)	76, 226, 334, 631
PpsI	GAGTC	4 cut(s)	76, 226, 334, 631
PpuMI	RGGWCCY	1 cut(s)	123
PshBI	ATTAAT	1 cut(s)	345
Psp1406I	AACGTT	1 cut(s)	819
Psp5II	RGGWCCY	1 cut(s)	123
Psp6I	CCWGG	1 cut(s)	1114
PspGI	CCWGG	1 cut(s)	1114
PspN4I	GGNNCC	3 cut(s)	124, 125, 1125
PspPI	GGNCC	2 cut(s)	123, 995
PspPPI	RGGWCCY	1 cut(s)	123
PstI	CTGCAG	2 cut(s)	335, 1036
PstNI	CAGNNNCTG	1 cut(s)	617
PsuI	RGATCY	1 cut(s)	278
PvuII	CAGCTG	1 cut(s)	45
RsaI	GTAC	1 cut(s)	688
RsaNI	GTAC	1 cut(s)	687
SaqAI	TTAA	2 cut(s)	345, 525
SatI	GCNGC	1 cut(s)	43
Sau3AI	GATC	2 cut(s)	139, 278
Sau96I	GGNCC	2 cut(s)	123, 995
SchI	GAGTC	4 cut(s)	76, 226, 335, 631
ScrFI	CCNGG	1 cut(s)	1116
SduI	GDGCHC	3 cut(s)	317, 457, 655
SfaNI	GCATC	2 cut(s)	460, 1135
SfcI	CTRYAG	2 cut(s)	331, 1032
SfuI	TTCGAA	1 cut(s)	219
SinI	GGWCC	2 cut(s)	123, 995
SmlI	CTYRAG	1 cut(s)	400
SmoI	CTYRAG	1 cut(s)	400
Sse9I	AATT	7 cut(s)	342, 406, 446, 501, 766, 950, 966
SsiI	CCGC	4 cut(s)	200, 246, 858, 1139
SspI	AATATT	1 cut(s)	805
SspMI	CTAG	4 cut(s)	771, 930, 957, 999
StyD4I	CCNGG	1 cut(s)	1114
TaaI	ACNGT	3 cut(s)	21, 589, 851
TaiI	ACGT	2 cut(s)	702, 822
TaqI	TCGA	2 cut(s)	101, 219
TasI	AATT	7 cut(s)	342, 406, 446, 501, 766, 950, 966
Tru1I	TTAA	2 cut(s)	345, 525
Tru9I	TTAA	2 cut(s)	345, 525
TscAI	CASTG	4 cut(s)	462, 582, 901, 945
TseFI	GTSAC	3 cut(s)	79, 395, 1044
TseI	GCWGC	1 cut(s)	42
Tsp45I	GTSAC	3 cut(s)	79, 395, 1044
TspDTI	ATGAA	6 cut(s)	65, 167, 258, 363, 751, 779
TspGWI	ACGGA	2 cut(s)	289, 1008
TspRI	CASTG	4 cut(s)	462, 582, 901, 945
VneI	GTGCAC	1 cut(s)	313
VpaK11BI	GGWCC	2 cut(s)	123, 995
VspI	ATTAAT	1 cut(s)	345
XapI	RAATTY	2 cut(s)	406, 766
XcmI	CCANNNNNNNNNTGG	1 cut(s)	782
XmiI	GTMKAC	1 cut(s)	853
XmnI	GAANNNNTTC	1 cut(s)	552
XspI	CTAG	4 cut(s)	771, 930, 957, 999
Zsp2I	ATGCAT	2 cut(s)	628, 1150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.