E3 ubiquitin-protein ligase
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G23280 AT3G23280 AT4G14365 |
| fragaria_vesca | FvH4_4g03720 FvH4_4g03720 FvH4_4g03730 |
| malus_domestica | MD05G1075400.v1.1 MD13G1214800.v1.1 MD16G1219900.v1.1 |
| prunus_persica | Prupe.1G040200_v2.0.a1 Prupe.1G040200_v2.0.a1 |
| pyrus_communis | pycom13g18820 pycom16g18320 |
| rosa_chinensis | RchiOBHm_Chr4g0393331 RchiOBHm_Chr4g0393371 |
| rosa_laevigata | RLG00000009750 RLG00000009758 RLG00000009759 RLG00000009763 |
| rosa_multiflora | Rmu_sc0008931.1_g000009 |
| rosa_roxburghii | Rroxscaffold_3G00224380 Rroxscaffold_5G00338320 Rroxscaffold_5G00338340 Rroxscaffold_5G00338360 Rroxscaffold_5G00338390 |
| rosa_rugosa | Rorug04G0001300 Rorug04G0001500 Rorug04G0001800 |
| rosa_samantha | Rh4AG046800 Rh4AG047000 Rh4AG047300 Rh4AG047400 Rh4BG042400 Rh4BG042600 Rh4CG049900 Rh4CG050000 Rh4DG044200 Rh5AG327600 |
| rosa_wichuraiana | Rw4G003700 Rw4G003720 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 124 |
| AgsI | TTSAA | 1 cut(s) | 61 |
| AluBI | AGCT | 2 cut(s) | 38, 154 |
| AluI | AGCT | 2 cut(s) | 38, 154 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 181 |
| ApeKI | GCWGC | 1 cut(s) | 81 |
| BbvI | GCAGC | 1 cut(s) | 68 |
| BfaI | CTAG | 1 cut(s) | 168 |
| BisI | GCNGC | 1 cut(s) | 82 |
| BlsI | GCNGC | 1 cut(s) | 83 |
| BmiI | GGNNCC | 1 cut(s) | 121 |
| BseGI | GGATG | 1 cut(s) | 10 |
| BseXI | GCAGC | 1 cut(s) | 68 |
| BsmI | GAATGC | 1 cut(s) | 36 |
| BspACI | CCGC | 1 cut(s) | 124 |
| BspLI | GGNNCC | 1 cut(s) | 121 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 181 |
| BstC8I | GCNNGC | 2 cut(s) | 36, 156 |
| BstF5I | GGATG | 1 cut(s) | 10 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 181 |
| BstV1I | GCAGC | 1 cut(s) | 68 |
| BtsCI | GGATG | 1 cut(s) | 10 |
| Cac8I | GCNNGC | 2 cut(s) | 36, 156 |
| CaiI | CAGNNNCTG | 1 cut(s) | 181 |
| CviAII | CATG | 2 cut(s) | 65, 114 |
| CviJI | RGCY | 2 cut(s) | 38, 154 |
| CviKI_1 | RGCY | 2 cut(s) | 38, 154 |
| FaeI | CATG | 2 cut(s) | 68, 117 |
| FaiI | YATR | 5 cut(s) | 66, 75, 115, 163, 173 |
| FatI | CATG | 2 cut(s) | 64, 113 |
| FauI | CCCGC | 1 cut(s) | 131 |
| Fnu4HI | GCNGC | 1 cut(s) | 82 |
| FokI | GGATG | 1 cut(s) | 17 |
| Fsp4HI | GCNGC | 1 cut(s) | 82 |
| FspBI | CTAG | 1 cut(s) | 168 |
| GluI | GCNGC | 1 cut(s) | 82 |
| Hin1II | CATG | 2 cut(s) | 68, 117 |
| HpyCH4V | TGCA | 4 cut(s) | 34, 158, 175, 184 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 181 |
| Hsp92II | CATG | 2 cut(s) | 68, 117 |
| LmnI | GCTCC | 1 cut(s) | 151 |
| Lsp1109I | GCAGC | 1 cut(s) | 68 |
| MaeI | CTAG | 1 cut(s) | 168 |
| MboII | GAAGA | 1 cut(s) | 59 |
| MluCI | AATT | 1 cut(s) | 50 |
| MmeI | TCCRAC | 1 cut(s) | 129 |
| Mva1269I | GAATGC | 1 cut(s) | 36 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 181 |
| NlaIII | CATG | 2 cut(s) | 68, 117 |
| NlaIV | GGNNCC | 1 cut(s) | 121 |
| PctI | GAATGC | 1 cut(s) | 36 |
| PkrI | GCNGC | 1 cut(s) | 83 |
| PspN4I | GGNNCC | 1 cut(s) | 121 |
| PstNI | CAGNNNCTG | 1 cut(s) | 181 |
| SatI | GCNGC | 1 cut(s) | 82 |
| SetI | ASST | 3 cut(s) | 40, 133, 156 |
| SgeI | CNNG | 9 cut(s) | 39, 47, 77, 126, 135, 148, 157, 167, 180 |
| Sse9I | AATT | 1 cut(s) | 50 |
| SsiI | CCGC | 1 cut(s) | 124 |
| SspMI | CTAG | 1 cut(s) | 168 |
| TasI | AATT | 1 cut(s) | 50 |
| TseI | GCWGC | 1 cut(s) | 81 |
| TspDTI | ATGAA | 1 cut(s) | 21 |
| XspI | CTAG | 1 cut(s) | 168 |