Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008931.1

Orthogroup ID

OG0002680

Physical Location & Seq

Genomic Coordinates Reverse (-)

54629 .. 55168

Gene Structure 540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008931.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ctggattgttttcaggcacgacctgcatttttgggtaataacaatccagcaactgcagacgatatagagttggccgtggctctcagtgcctcccttcattctgcttcacaggagagaccacgttcaagtagctccggtacctctacaaatgcttctaacatgaatggttggagtacgtccacaaacactggcaactacaacggttgggatgcaacaattgcagctgcttctccaaaagtacgtagcagcgactggtcaggggttcaaactggcctagttggtgactcaattgggcatgcaaacatccaggaaatctctcctacccaaacaactcctacctctgattcagttatatcatcttcaacacaatcagctgcaatcccatcagcttcaccagttttagatgaaagtctatatgaatatcctatccactatccatcaattgatgacagccctattgatctatcaaacccaactgctgaaagtgtacctcctacagttgatgaaaagaaaggtgatgggcctcttcttcatgtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Methyltransf_29 zf-C3HC4_3

Protein Analysis

179

Amino Acids

18.59

Weight (kDa)

4.29

Isoelectric Point (pI)

52.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002680)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23280 AT3G23280 AT4G14365
fragaria_vesca	FvH4_4g03720 FvH4_4g03720 FvH4_4g03730
malus_domestica	MD05G1075400.v1.1 MD13G1214800.v1.1 MD16G1219900.v1.1
prunus_persica	Prupe.1G040200_v2.0.a1 Prupe.1G040200_v2.0.a1
pyrus_communis	pycom13g18820 pycom16g18320
rosa_chinensis	RchiOBHm_Chr4g0393331 RchiOBHm_Chr4g0393371
rosa_laevigata	RLG00000009750 RLG00000009758 RLG00000009759 RLG00000009763
rosa_multiflora	Rmu_sc0008931.1_g000009
rosa_roxburghii	Rroxscaffold_3G00224380 Rroxscaffold_5G00338320 Rroxscaffold_5G00338340 Rroxscaffold_5G00338360 Rroxscaffold_5G00338390
rosa_rugosa	Rorug04G0001300 Rorug04G0001500 Rorug04G0001800
rosa_samantha	Rh4AG046800 Rh4AG047000 Rh4AG047300 Rh4AG047400 Rh4BG042400 Rh4BG042600 Rh4CG049900 Rh4CG050000 Rh4DG044200 Rh5AG327600
rosa_wichuraiana	Rw4G003700 Rw4G003720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	31
Acc65I	GGTACC	1 cut(s)	137
AccB1I	GGYRCC	1 cut(s)	137
AcoI	YGGCCR	1 cut(s)	72
AfaI	GTAC	4 cut(s)	139, 175, 240, 489
AgsI	TTSAA	3 cut(s)	126, 266, 363
AjnI	CCWGG	1 cut(s)	306
AluBI	AGCT	4 cut(s)	132, 224, 374, 389
AluI	AGCT	4 cut(s)	132, 224, 374, 389
Alw26I	GTCTC	1 cut(s)	109
AlwNI	CAGNNNCTG	2 cut(s)	53, 252
AoxI	GGCC	3 cut(s)	72, 271, 521
ApeKI	GCWGC	4 cut(s)	221, 224, 246, 374
Asp718I	GGTACC	1 cut(s)	137
AspS9I	GGNCC	1 cut(s)	521
AsuHPI	GGTGA	3 cut(s)	293, 384, 527
BanI	GGYRCC	1 cut(s)	137
BbvI	GCAGC	4 cut(s)	211, 233, 258, 361
BccI	CCATC	3 cut(s)	391, 445, 512
BceAI	ACGGC	1 cut(s)	59
BciT130I	CCWGG	1 cut(s)	308
BcoDI	GTCTC	1 cut(s)	109
BfaI	CTAG	1 cut(s)	275
BfmI	CTRYAG	2 cut(s)	54, 495
BfuAI	ACCTGC	1 cut(s)	31
BisI	GCNGC	4 cut(s)	222, 225, 247, 375
BlsI	GCNGC	4 cut(s)	223, 226, 248, 376
Bme1390I	CCNGG	1 cut(s)	308
BmgT120I	GGNCC	1 cut(s)	521
BmiI	GGNNCC	1 cut(s)	139
BmrFI	CCNGG	1 cut(s)	308
BmsI	GCATC	1 cut(s)	199
BsaAI	YACGTR	1 cut(s)	242
BsaI	GGTCTC	1 cut(s)	109
BsaJI	CCNNGG	1 cut(s)	75
BsaWI	WCCGGW	1 cut(s)	134
Bse1I	ACTGG	4 cut(s)	193, 257, 274, 395
BseBI	CCWGG	1 cut(s)	308
BseDI	CCNNGG	1 cut(s)	75
BseGI	GGATG	2 cut(s)	214, 303
BseMII	CTCAG	1 cut(s)	97
BseNI	ACTGG	4 cut(s)	193, 257, 274, 395
BseXI	GCAGC	4 cut(s)	211, 233, 258, 361
BshFI	GGCC	3 cut(s)	74, 273, 523
BshNI	GGYRCC	1 cut(s)	137
BsiSI	CCGG	1 cut(s)	135
BsmAI	GTCTC	1 cut(s)	109
BsnI	GGCC	3 cut(s)	74, 273, 523
Bso31I	GGTCTC	1 cut(s)	109
Bsp143I	GATC	1 cut(s)	460
BspANI	GGCC	3 cut(s)	74, 273, 523
BspCNI	CTCAG	1 cut(s)	96
BspLI	GGNNCC	1 cut(s)	139
BspMAI	CTGCAG	1 cut(s)	58
BspMI	ACCTGC	1 cut(s)	31
BspT107I	GGYRCC	1 cut(s)	137
BspTNI	GGTCTC	1 cut(s)	109
BsrI	ACTGG	4 cut(s)	193, 257, 274, 395
BssECI	CCNNGG	1 cut(s)	75
BssMI	GATC	1 cut(s)	460
Bst2UI	CCWGG	1 cut(s)	308
Bst4CI	ACNGT	2 cut(s)	203, 499
Bst6I	CTCTTC	1 cut(s)	531
BstAPI	GCANNNNNTGC	2 cut(s)	23, 218
BstBAI	YACGTR	1 cut(s)	242
BstC8I	GCNNGC	1 cut(s)	297
BstDEI	CTNAG	1 cut(s)	83
BstDSI	CCRYGG	1 cut(s)	75
BstF5I	GGATG	2 cut(s)	214, 303
BstKTI	GATC	1 cut(s)	463
BstMAI	GTCTC	1 cut(s)	109
BstMBI	GATC	1 cut(s)	460
BstMWI	GCNNNNNNNGC	3 cut(s)	23, 86, 218
BstNI	CCWGG	1 cut(s)	308
BstNSI	RCATGY	1 cut(s)	299
BstSCI	CCNGG	1 cut(s)	306
BstSFI	CTRYAG	2 cut(s)	54, 495
BstSNI	TACGTA	1 cut(s)	242
BstV1I	GCAGC	4 cut(s)	211, 233, 258, 361
BsuRI	GGCC	3 cut(s)	74, 273, 523
BtgI	CCRYGG	1 cut(s)	75
BtsCI	GGATG	2 cut(s)	214, 303
BtsIMutI	CAGTG	2 cut(s)	91, 186
BveI	ACCTGC	1 cut(s)	31
Cac8I	GCNNGC	1 cut(s)	297
CaiI	CAGNNNCTG	2 cut(s)	53, 252
Cfr13I	GGNCC	1 cut(s)	521
Csp6I	GTAC	4 cut(s)	138, 174, 239, 488
CviAII	CATG	3 cut(s)	160, 296, 533
CviJI	RGCY	9 cut(s)	74, 80, 132, 224, 273, 374, 389, 453, 523
CviKI_1	RGCY	9 cut(s)	74, 80, 132, 224, 273, 374, 389, 453, 523
CviQI	GTAC	4 cut(s)	138, 174, 239, 488
DdeI	CTNAG	1 cut(s)	83
DpnI	GATC	1 cut(s)	462
DpnII	GATC	1 cut(s)	460
EaeI	YGGCCR	1 cut(s)	72
Eam1104I	CTCTTC	1 cut(s)	531
EarI	CTCTTC	1 cut(s)	531
Eco105I	TACGTA	1 cut(s)	242
Eco31I	GGTCTC	1 cut(s)	109
EcoRII	CCWGG	1 cut(s)	306
FaeI	CATG	3 cut(s)	163, 299, 536
FaiI	YATR	7 cut(s)	65, 161, 297, 353, 415, 417, 534
FatI	CATG	3 cut(s)	159, 295, 532
Fnu4HI	GCNGC	4 cut(s)	222, 225, 247, 375
FokI	GGATG	2 cut(s)	221, 290
Fsp4HI	GCNGC	4 cut(s)	222, 225, 247, 375
FspBI	CTAG	1 cut(s)	275
GluI	GCNGC	4 cut(s)	222, 225, 247, 375
HaeIII	GGCC	3 cut(s)	74, 273, 523
HapII	CCGG	1 cut(s)	135
Hin1II	CATG	3 cut(s)	163, 299, 536
HinfI	GANTC	2 cut(s)	284, 344
HpaII	CCGG	1 cut(s)	135
HphI	GGTGA	3 cut(s)	293, 384, 527
Hpy166II	GTNNAC	2 cut(s)	180, 488
Hpy188I	TCNGA	1 cut(s)	343
Hpy8I	GTNNAC	2 cut(s)	180, 488
HpyAV	CCTTC	1 cut(s)	104
HpyCH4III	ACNGT	2 cut(s)	203, 499
HpyCH4IV	ACGT	3 cut(s)	121, 176, 241
HpyCH4V	TGCA	6 cut(s)	26, 56, 212, 221, 299, 377
HpyF10VI	GCNNNNNNNGC	3 cut(s)	23, 86, 218
HpyF3I	CTNAG	1 cut(s)	83
HpySE526I	ACGT	3 cut(s)	121, 176, 241
Hsp92II	CATG	3 cut(s)	163, 299, 536
KpnI	GGTACC	1 cut(s)	141
Kzo9I	GATC	1 cut(s)	460
LmnI	GCTCC	1 cut(s)	137
Lsp1109I	GCAGC	4 cut(s)	211, 233, 258, 361
LweI	GCATC	1 cut(s)	199
MaeI	CTAG	1 cut(s)	275
MaeII	ACGT	3 cut(s)	121, 176, 241
MaeIII	GTNAC	1 cut(s)	281
MalI	GATC	1 cut(s)	462
MboI	GATC	1 cut(s)	460
MboII	GAAGA	3 cut(s)	351, 518, 521
MfeI	CAATTG	3 cut(s)	216, 288, 441
MluCI	AATT	3 cut(s)	216, 288, 441
MlyI	GAGTC	1 cut(s)	278
MmeI	TCCRAC	1 cut(s)	149
MnlI	CCTC	5 cut(s)	100, 151, 349, 501, 534
MspA1I	CMGCKG	2 cut(s)	224, 374
MspI	CCGG	1 cut(s)	135
MspR9I	CCNGG	1 cut(s)	308
MunI	CAATTG	3 cut(s)	216, 288, 441
MvaI	CCWGG	1 cut(s)	308
MwoI	GCNNNNNNNGC	3 cut(s)	23, 86, 218
NdeII	GATC	1 cut(s)	460
NlaIII	CATG	3 cut(s)	163, 299, 536
NlaIV	GGNNCC	1 cut(s)	139
NmuCI	GTSAC	1 cut(s)	281
NspI	RCATGY	1 cut(s)	299
PaeI	GCATGC	1 cut(s)	299
PfeI	GAWTC	1 cut(s)	344
PfoI	TCCNGGA	1 cut(s)	306
PkrI	GCNGC	4 cut(s)	223, 226, 248, 376
PleI	GAGTC	1 cut(s)	278
PpsI	GAGTC	1 cut(s)	278
Ppu21I	YACGTR	1 cut(s)	242
Psp6I	CCWGG	1 cut(s)	306
PspGI	CCWGG	1 cut(s)	306
PspN4I	GGNNCC	1 cut(s)	139
PspPI	GGNCC	1 cut(s)	521
PstI	CTGCAG	1 cut(s)	58
PstNI	CAGNNNCTG	2 cut(s)	53, 252
PvuII	CAGCTG	2 cut(s)	224, 374
RsaI	GTAC	4 cut(s)	139, 175, 240, 489
RsaNI	GTAC	4 cut(s)	138, 174, 239, 488
SatI	GCNGC	4 cut(s)	222, 225, 247, 375
Sau3AI	GATC	1 cut(s)	460
Sau96I	GGNCC	1 cut(s)	521
SchI	GAGTC	1 cut(s)	278
ScrFI	CCNGG	1 cut(s)	308
SfaNI	GCATC	1 cut(s)	199
SfcI	CTRYAG	2 cut(s)	54, 495
SnaBI	TACGTA	1 cut(s)	242
SphI	GCATGC	1 cut(s)	299
Sse9I	AATT	3 cut(s)	216, 288, 441
SspMI	CTAG	1 cut(s)	275
StyD4I	CCNGG	1 cut(s)	306
TaaI	ACNGT	2 cut(s)	203, 499
TaiI	ACGT	3 cut(s)	124, 179, 244
TasI	AATT	3 cut(s)	216, 288, 441
TfiI	GAWTC	1 cut(s)	344
TscAI	CASTG	2 cut(s)	91, 193
TseFI	GTSAC	1 cut(s)	281
TseI	GCWGC	4 cut(s)	221, 224, 246, 374
Tsp45I	GTSAC	1 cut(s)	281
TspDTI	ATGAA	6 cut(s)	86, 176, 420, 432, 519, 521
TspRI	CASTG	2 cut(s)	91, 193
XceI	RCATGY	1 cut(s)	299
XspI	CTAG	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.